CRAN

jtGWAS 1.5.1

Efficient Jonckheere-Terpstra Test Statistics

Released Aug 14, 2017 by Jiaxing Lin

This package can be loaded by Renjin but all tests failed.

Dependencies

Rcpp

The core of this 'Rcpp' based package is a function to compute standardized Jonckheere-Terpstra test statistics for large numbers of dependent and independent variables, e.g., genome-wide analysis. It implements 'OpenMP', allowing the option of computing on multiple threads. Supporting functions are also provided to calculate p-values and summarize results.

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.cran</groupId>
    <artifactId>jtGWAS</artifactId>
    <version>1.5.1-b16</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

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Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.cran:jtGWAS')

Test Results

This package was last tested against Renjin 0.9.2689 on Aug 26, 2018.

Source

R
C
C++

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Release History