CRAN

mQTL 1.0

Metabolomic Quantitative Trait Locus Mapping

Released Oct 21, 2013 by Lyamine Hedjazi

Dependencies

outliers 0.14 MASS 7.3-50 qtl 1.42-8

mQTL provides a complete QTL analysis pipeline for metabolomic data. Distinctive features include normalisation using PQN approach, peak alignment using RSPA approach, dimensionality reduction using SRV approach and finally QTL mapping using R/qtl package.

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.cran</groupId>
    <artifactId>mQTL</artifactId>
    <version>1.0-b267</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

View build log

Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.cran:mQTL')

Test Results

This package was last tested against Renjin 0.9.2644 on Jun 2, 2018.

• normalise-examples
• peakPeaks-examples
• ppersp-examples
• segmentateSp-examples
• selectRefSp-examples
• sgolay-examples
• sgolayDeriv-examples

Source

View GitHub Mirror

Release History

• 1.0