CRAN

marcher 0.0-2

Migration and Range Change Estimation in R

Released Apr 12, 2017 by Eliezer Gurarie

Dependencies

Matrix 1.2-14 RColorBrewer 1.1-2 scales 0.5.0 numDeriv 2016.8-1 minpack.lm 1.2-1 plyr 1.8.4 mvtnorm 1.0-8 zoo 1.8-1 magrittr 1.5

A set of tools for likelihood-based estimation, model selection and testing of two- and three-range shift and migration models for animal movement data as described in Gurarie et al. (2017) . Provided movement data (X, Y and Time), including irregularly sampled data, functions estimate the time, duration and location of one or two range shifts, as well as the ranging area and auto-correlation structure of the movment. Tests assess, for example, whether the shift was "significant", and whether a two-shift migration was a true return migration.

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.cran</groupId>
    <artifactId>marcher</artifactId>
    <version>0.0-2-b16</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

View build log

Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.cran:marcher')

Test Results

This package was last tested against Renjin 0.9.2644 on Jun 2, 2018.

• Michela-examples
• SimulatedTracks-examples
• estimate_shift-examples
• fitNSD-examples
• getMu-examples
• plot.shiftfit-examples
• quickfit-examples
• scan_track-examples
• selectModel-examples
• simulate_shift-examples

Source

View GitHub Mirror

Release History

• 0.0-2