CRAN
medicalrisk 1.2
Medical Risk and Comorbidity Tools for ICD-9-CM Data
Released Jan 24, 2016 by Patrick McCormick
Dependencies
hash 3.0.1 plyr 1.8.4 reshape2 1.4.3
Generates risk estimates and comorbidity flags from ICD-9-CM codes available in administrative medical datasets. The package supports the Charlson Comorbidity Index, the Elixhauser Comorbidity classification, the Revised Cardiac Risk Index, and the Risk Stratification Index. Methods are table-based, fast, and use the 'plyr' package, so parallelization is possible for large jobs. Also includes a sample of real ICD-9 data for 100 patients from a publicly available dataset.
Installation
Maven
This package can be included as a dependency from a Java or Scala project by including
the following your project's pom.xml file.
Read more
about embedding Renjin in JVM-based projects.
<dependencies>
<dependency>
<groupId>org.renjin.cran</groupId>
<artifactId>medicalrisk</artifactId>
<version>1.2-b81</version>
</dependency>
</dependencies>
<repositories>
<repository>
<id>bedatadriven</id>
<name>bedatadriven public repo</name>
<url>https://nexus.bedatadriven.com/content/groups/public/</url>
</repository>
</repositories>
Renjin CLI
If you're using Renjin from the command line, you load this library by invoking:
library('org.renjin.cran:medicalrisk')
Test Results
This package was last tested against Renjin 0.9.2644 on Jun 2, 2018.
- charlson_list-examples
- charlson_weights-examples
- charlson_weights_orig-examples
- elixhauser_list-examples
- generate_charlson_index_df-examples
- generate_comorbidity_df-examples
- icd9cm_charlson_deyo-examples
- icd9cm_charlson_quan-examples
- icd9cm_charlson_romano-examples
- icd9cm_elixhauser_ahrq37-examples
- icd9cm_elixhauser_quan-examples
- icd9cm_list-examples
- icd9cm_sessler_rsi-examples
- melt_icd9list-examples
- merge_icd9_dx_and_procs-examples
- sessler_get_single_beta-examples
- test-all
- vt_inp_sample-examples