CRAN
metaMix 0.3
Bayesian Mixture Analysis for Metagenomic Community Profiling
Released Feb 11, 2019 by Sofia Morfopoulou
This package cannot yet be used with Renjin it depends on other packages which are not available: data.table 1.12.0, Rmpi 0.6-9, and ggplot2 3.1.0
Dependencies
data.table 1.12.0 ggplot2 3.1.0 Rmpi 0.6-9 gtools 3.8.1 Matrix 1.2-15
Resolves complex metagenomic mixtures by analysing deep sequencing data, using a mixture model based approach. The use of parallel Monte Carlo Markov chains for the exploration of the species space enables the identification of the set of species more likely to contribute to the mixture.