CRAN

miLineage 2.1

Association Tests for Microbial Lineages on a Taxonomic Tree

Released Mar 23, 2018 by Zheng-Zheng Tang

This package can be loaded by Renjin but 4 out 6 tests failed.

Dependencies

MASS 7.3-49 geepack 1.2-1 data.table 1.10.4-3

A variety of association tests for microbiome data analysis including Quasi-Conditional Association Tests (QCAT) described in Tang Z.-Z. et al.(2017) and Zero-Inflated Generalized Dirichlet Multinomial (ZIGDM) tests described in Tang Z.-Z. & Chen G. (2017, submitted).

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.cran</groupId>
    <artifactId>miLineage</artifactId>
    <version>2.1-b2</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

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Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.cran:miLineage')

Test Results

This package was last tested against Renjin 0.9.2622 on Apr 7, 2018.

Source

R

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Release History