CRAN
micropan 1.2
Microbial Pan-Genome Analysis
Released Feb 15, 2018 by Lars Snipen
This package can be loaded by Renjin but 11 out 33 tests failed.
Dependencies
microseq 1.2.2 Rcpp BH 1.66.0-1 igraph 1.2.1
A collection of functions for computations and visualizations of microbial pan-genomes.
Installation
Maven
This package can be included as a dependency from a Java or Scala project by including
the following your project's pom.xml file.
Read more
about embedding Renjin in JVM-based projects.
<dependencies>
<dependency>
<groupId>org.renjin.cran</groupId>
<artifactId>micropan</artifactId>
<version>1.2-b5</version>
</dependency>
</dependencies>
<repositories>
<repository>
<id>bedatadriven</id>
<name>bedatadriven public repo</name>
<url>https://nexus.bedatadriven.com/content/groups/public/</url>
</repository>
</repositories>
Renjin CLI
If you're using Renjin from the command line, you load this library by invoking:
library('org.renjin.cran:micropan')
Test Results
This package was last tested against Renjin 0.9.2644 on Jun 2, 2018.
- bClust-examples
- bDist-examples
- binomixEstimate-examples
- chao-examples
- dClust-examples
- distJaccard-examples
- distManhattan-examples
- findOrfs-examples
- fluidity-examples
- geneWeights-examples
- generic.Binomix-examples
- generic.Panmat-examples
- generic.Panpca-examples
- generic.Pantree-examples
- generic.Rarefac-examples
- getAccessions-examples
- gff2fasta-examples
- gffSignature-examples
- heaps-examples
- hmmerCleanOverlap-examples
- lorfs-examples
- mpneumoniae-examples
- orfLength-examples
- panMatrix-examples
- panPrep-examples
- panTree-examples
- panpca-examples
- rarefaction-examples
- readBlastTable-examples
- readGFF-examples
- readHmmer-examples
- scores.loadings-examples
- xz-examples