CRAN

mineCitrus 1.0.0

Extract and Analyze Median Molecule Intensity from 'citrus' Output

Released Jul 5, 2018 by Allison Throm

Dependencies

ggplot2 3.0.0

Citrus is a computational technique developed for the analysis of high dimensional cytometry data sets. This package extracts, statistically analyzes, and visualizes marker expression from 'citrus' data. This code was used to generate data for Figures 3 and 4 in the forthcoming manuscript: Throm et al. “Identification of Enhanced Interferon-Gamma Signaling in Polyarticular Juvenile Idiopathic Arthritis with Mass Cytometry”, JCI-Insight. For more information on Citrus, please see: Bruggner et al. (2014) . To download the 'citrus' package, please see .

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.cran</groupId>
    <artifactId>mineCitrus</artifactId>
    <version>1.0.0-b2</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

View build log

Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.cran:mineCitrus')

Test Results

This package was last tested against Renjin 0.9.2689 on Aug 26, 2018.

• allmeds-examples
• classclustermeds-examples
• clustermeds-examples
• difMarkerPlots-examples
• difMarkerPlots2-examples
• filterMarker-examples
• findSig-examples
• findclust-examples
• plotdif-examples
• plotdif2-examples
• posthoc-examples
• processforanova-examples
• sortmat-examples

Source

View GitHub Mirror

Release History

• 1.0.0