CRAN

mixEMM 1.0

A Mixed-Effects Model for Analyzing Cluster-Level Non-Ignorable Missing Data

Released Jun 8, 2017 by Lin S. Chen

This package is available for Renjin and there are no known compatibility issues.

Contains functions for estimating a mixed-effects model for clustered data (or batch-processed data) with cluster-level (or batch- level) missing values in the outcome, i.e., the outcomes of some clusters are either all observed or missing altogether. The model is developed for analyzing incomplete data from labeling-based quantitative proteomics experiments but is not limited to this type of data. We used an expectation conditional maximization (ECM) algorithm for model estimation. The cluster-level missingness may depend on the average value of the outcome in the cluster (missing not at random).

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.cran</groupId>
    <artifactId>mixEMM</artifactId>
    <version>1.0-b13</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

View build log

Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.cran:mixEMM')

Test Results

This package was last tested against Renjin 0.9.2644 on Jun 2, 2018.

sim_dat-examples

Source

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