CRAN

mseapca 1.0

Metabolite set enrichment analysis for factor loading in principal component analysis

Released Apr 15, 2012 by Hiroyuki Yamamoto

Dependencies

XML 3.98-1.11

This package provides functions for metabolite set enrichment analysis (MSEA) and principal component analysis (PCA), and converting metabolite set list from your own csv files or KEGG's tar.gz files to XML documents. This package is suitable for computation of MSEA for factor loading in PCA.

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.cran</groupId>
    <artifactId>mseapca</artifactId>
    <version>1.0-b40</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

View build log

Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.cran:mseapca')

Test Results

This package was last tested against Renjin 0.9.2644 on Jun 2, 2018.

• csv2list-examples
• list2xml-examples
• msea_ora-examples
• msea_sub-examples
• pathway_class-examples
• pca_scaled-examples
• read_pathway-examples
• setlabel-examples

Source

View GitHub Mirror

Release History

• 1.0