CRAN

msigdbr 6.2.1

MSigDB Gene Sets for Multiple Organisms in a Tidy Data Format

Released Oct 9, 2018 by Igor Dolgalev

This package cannot yet be used with Renjin it depends on other packages which are not available: tibble 2.1.1, dplyr 0.8.0.1, and rlang 0.3.4

Dependencies

dplyr 0.8.0.1 rlang 0.3.4 tibble 2.1.1 magrittr 1.5

Provides the 'Molecular Signatures Database' (MSigDB) gene sets typically used with the 'Gene Set Enrichment Analysis' (GSEA) software (Subramanian et al. 2005 , Liberzon et al. 2015 ) in a standard R data frame with key-value pairs. Included are the original human gene symbols and Entrez IDs as well as the equivalents for various frequently studied model organisms such as mouse, rat, pig, fly, and yeast.

Source

R

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