CRAN
mstherm 0.4.7
Analyze MS/MS Protein Melting Data
Released Apr 27, 2017 by Jeremy Volkening
Dependencies
RColorBrewer 1.1-2 foreach 1.4.4 doParallel 1.0.11 nls2 0.2 plotrix 3.7-2
Software to aid in modeling and analyzing mass-spectrometry-based proteome melting data. Quantitative data is imported and normalized and thermal behavior is modeled at the protein level. Methods exist for normalization, modeling, visualization, and export of results. For a general introduction to MS-based thermal profiling, see Savitski et al. (2014)
Installation
Maven
This package can be included as a dependency from a Java or Scala project by including
the following your project's pom.xml file.
Read more
about embedding Renjin in JVM-based projects.
<dependencies>
<dependency>
<groupId>org.renjin.cran</groupId>
<artifactId>mstherm</artifactId>
<version>0.4.7-b13</version>
</dependency>
</dependencies>
<repositories>
<repository>
<id>bedatadriven</id>
<name>bedatadriven public repo</name>
<url>https://nexus.bedatadriven.com/content/groups/public/</url>
</repository>
</repositories>
Renjin CLI
If you're using Renjin from the command line, you load this library by invoking:
library('org.renjin.cran:mstherm')
Test Results
This package was last tested against Renjin 0.9.2644 on Jun 2, 2018.
- MSThermExperiment-examples
- TPP_modeling.MSThermExperiment_creation
- as.data.frame.MSThermResultSet-examples
- model_experiment-examples
- model_protein-examples
- normalize_to_profile-examples
- normalize_to_std-examples
- normalize_to_tm-examples
- plot.MSThermResult-examples
- plot.MSThermResultSet-examples
- summary.MSThermResult-examples
- summary.MSThermResultSet-examples
- testthat
- write.sqlite-examples