CRAN

mycobacrvR 1.0

Integrative immunoinformatics for Mycobacterial diseases in R platform

Released Dec 26, 2013 by S. Ramachandran

The mycobacrvR package contains utilities to provide detailed information for B cell and T cell epitopes for predicted adhesins from various servers such as ABCpred, Bcepred, Bimas, Propred, NetMHC and IEDB. Please refer the URL below to download data files (data_mycobacrvR.zip) used in functions of this package.

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.cran</groupId>
    <artifactId>mycobacrvR</artifactId>
    <version>1.0-b244</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

View build log

Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.cran:mycobacrvR')

Test Results

This package was last tested against Renjin 0.9.2644 on Jun 1, 2018.

• abcpred_nmer-examples
• bcepred_nmer-examples
• bimas_nmer-examples
• iedb_arb_mhci_nmer-examples
• iedb_arb_mhcii_nmer-examples
• iedb_consensus_mhci_nmer-examples
• iedb_consensus_mhcii_nmer-examples
• netmhcNN_nmer-examples
• netmhcWT_nmer-examples
• propred_nmer-examples

Source

View GitHub Mirror

Release History

• 1.0