CRAN

netassoc 0.6.3

Inference of Species Associations from Co-Occurrence Data

Released Jun 5, 2017 by Benjamin Blonder

This package can be loaded by Renjin but 3 out 5 tests failed.

Dependencies

corpcor 1.6.9 vegan 2.5-2 huge 1.2.7 infotheo 1.2.0 igraph 1.2.1

Infers species associations from community matrices. Uses local and (optional) regional-scale co-occurrence data by comparing observed partial correlation coefficients between species to those estimated from regional species distributions. Extends Gaussian graphical models to a null modeling framework. Provides interface to a variety of inverse covariance matrix estimation methods.

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.cran</groupId>
    <artifactId>netassoc</artifactId>
    <version>0.6.3-b15</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

View build log

Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.cran:netassoc')

Test Results

This package was last tested against Renjin 0.9.2644 on Jun 2, 2018.

Source

R

View GitHub Mirror

Release History