CRAN

onemap 2.1.1

Construction of Genetic Maps in Experimental Crosses: Full-Sib, RILs, F2 and Backcrosses

Released Oct 18, 2017 by Cristiane Taniguti

This package can be loaded by Renjin but 15 out 21 tests failed. An older version of this package is more compatible with Renjin.

Dependencies

maps 3.2.0 fields 9.0 reshape2 1.4.3 tkrplot 0.0-23 Rcpp ggplot2 2.2.1

Analysis of molecular marker data from model (backcrosses, F2 and recombinant inbred lines) and non-model systems (i. e. outcrossing species). For the later, it allows statistical analysis by simultaneously estimating linkage and linkage phases (genetic map construction) according to Wu et al. (2002) . All analysis are based on multipoint approaches using hidden Markov models.

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.cran</groupId>
    <artifactId>onemap</artifactId>
    <version>2.1.1-b7</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

View build log

Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.cran:onemap')

Test Results

This package was last tested against Renjin 0.8.2543 on Dec 17, 2017.