CRAN

opm 1.1.0

Analysing Phenotype Microarray and Growth Curve Data

Released Apr 22, 2014 by Markus Goeker

This package can be loaded by Renjin but 39 out 59 tests failed.

Dependencies

lattice 0.20-35 boot 1.3-20 rjson nlme 3.1-137 yaml 2.2.0 pkgutils 0.6.0 plotrix 3.7-2 DBI 1.0.0 hwriter 1.3.2 grofit 1.1.1-1 mgcv 1.8-24 Ckmeans.1d.dp 4.2.1

Tools for analysing OmniLog(R) and MicroStation(TM) phenotype microarray (PM) data as produced by the devices distributed by BIOLOG Inc. as well as similar kinds of data such as growth curves. Major facilities are plotting data, accurately estimating curve parameters, comparing and discretising data, creating phylogenetic formats and reports for taxonomic journals, drawing the PM analysis results in biochemical pathway graphs optionally including genome annotations, running multiple comparisons of means, easy interaction with powerful feature-selection approaches, integrating metadata, using the YAML format for the storage of data and metadata, batch conversion of large numbers of files, and database I/O. (The suggested mboostDevel is from R-Forge and not necessary.)

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.cran</groupId>
    <artifactId>opm</artifactId>
    <version>1.1.0-b238</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

View build log

Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.cran:opm')

Test Results

This package was last tested against Renjin 0.9.2689 on Aug 26, 2018.

Source

R

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Release History