CRAN
qtl 1.44-9
Tools for Analyzing QTL Experiments
Released Jan 22, 2019 by Karl W Broman
This package can be loaded by Renjin but 71 out 205 tests failed.
Analysis of experimental crosses to identify genes (called quantitative trait loci, QTLs) contributing to variation in quantitative traits.
Installation
Maven
This package can be included as a dependency from a Java or Scala project by including
the following your project's pom.xml
file.
Read more
about embedding Renjin in JVM-based projects.
<dependencies> <dependency> <groupId>org.renjin.cran</groupId> <artifactId>qtl</artifactId> <version>1.44-9-b1</version> </dependency> </dependencies> <repositories> <repository> <id>bedatadriven</id> <name>bedatadriven public repo</name> <url>https://nexus.bedatadriven.com/content/groups/public/</url> </repository> </repositories>
Renjin CLI
If you're using Renjin from the command line, you load this library by invoking:
library('org.renjin.cran:qtl')
Test Results
This package was last tested against Renjin 0.9.2719 on Jan 24, 2019.
- MQM-examples
- add.threshold-examples
- addcovarint-examples
- addint-examples
- addmarker-examples
- addpair-examples
- addqtl-examples
- addtoqtl-examples
- allchrsplits-examples
- argmax.geno-examples
- arithscan-examples
- arithscanperm-examples
- badorder-examples
- bayesint-examples
- bristle3-examples
- bristleX-examples
- c.cross-examples
- c.scanone-examples
- c.scanoneperm-examples
- c.scantwo-examples
- c.scantwoperm-examples
- calc.errorlod-examples
- calc.genoprob-examples
- calc.penalties-examples
- cbind.scanoneperm-examples
- cbind.scantwoperm-examples
- checkAlleles-examples
- chrlen-examples
- chrnames-examples
- cim-examples
- clean.cross-examples
- clean.scantwo-examples
- cleanGeno-examples
- comparecrosses-examples
- comparegeno-examples
- compareorder-examples
- condense.scantwo-examples
- convert.map-examples
- convert2riself-examples
- convert2risib-examples
- convert2sa-examples
- countXO-examples
- drop.dupmarkers-examples
- drop.markers-examples
- drop.nullmarkers-examples
- dropfromqtl-examples
- droponemarker-examples
- effectplot-examples
- effectscan-examples
- est.map-examples
- est.rf-examples
- fake.4way-examples
- fake.bc-examples
- fake.f2-examples
- fill.geno-examples
- find.flanking-examples
- find.marker-examples
- find.markerpos-examples
- find.pheno-examples
- find.pseudomarker-examples
- findDupMarkers-examples
- findmarkerindex-examples
- fitqtl-examples
- fitstahl-examples
- flip.order-examples
- formLinkageGroups-examples
- formMarkerCovar-examples
- geno.crosstab-examples
- geno.image-examples
- geno.table-examples
- getid-examples
- groupclusteredheatmap-examples
- hyper-examples
- inferFounderHap-examples
- inferredpartitions-examples
- interpPositions-examples
- jittermap-examples
- listeria-examples
- locateXO-examples
- lodint-examples
- makeqtl-examples
- map10-examples
- map2table-examples
- mapthis-examples
- markerlrt-examples
- markernames-examples
- max.scanone-examples
- max.scantwo-examples
- movemarker-examples
- mqmaugment-examples
- mqmautocofactors-examples
- mqmextractmarkers-examples
- mqmfind.marker-examples
- mqmgetmodel-examples
- mqmpermutation-examples
- mqmplotcircle-examples
- mqmplotcistrans-examples
- mqmplotclusteredheatmap-examples
- mqmplotcofactors-examples
- mqmplotdirectedqtl-examples
- mqmplotheatmap-examples
- mqmplotmultitrait-examples
- mqmplotpermutations-examples
- mqmplotsingletrait-examples
- mqmprocesspermutation-examples
- mqmscan-examples
- mqmscanall-examples
- mqmscanfdr-examples
- mqmsetcofactors-examples
- mqmtestnormal-examples
- multitrait-examples
- nchr-examples
- nind-examples
- nmar-examples
- nmissing-examples
- nphe-examples
- nqrank-examples
- nqtl-examples
- ntyped-examples
- nullmarkers-examples
- orderMarkers-examples
- phenames-examples
- pickMarkerSubset-examples
- plot.cross-examples
- plot.errorlod-examples
- plot.geno-examples
- plot.info-examples
- plot.map-examples
- plot.missing-examples
- plot.pheno-examples
- plot.pxg-examples
- plot.qtl-examples
- plot.rf-examples
- plot.rfmatrix-examples
- plot.scanone-examples
- plot.scanoneboot-examples
- plot.scanoneperm-examples
- plot.scantwo-examples
- plot.scantwoperm-examples
- plotLodProfile-examples
- plotModel-examples
- pull.argmaxgeno-examples
- pull.draws-examples
- pull.geno-examples
- pull.genoprob-examples
- pull.map-examples
- pull.markers-examples
- pull.pheno-examples
- pull.rf-examples
- qtlversion-examples
- reduce2grid-examples
- refineqtl-examples
- reorderqtl-examples
- replace.map-examples
- replacemap.scanone-examples
- replacemap.scantwo-examples
- replaceqtl-examples
- rescalemap-examples
- ripple-examples
- scanPhyloQTL-examples
- scanone-examples
- scanoneboot-examples
- scanonevar-examples
- scanqtl-examples
- scantwo-examples
- scantwopermhk-examples
- shiftmap-examples
- sim.cross-examples
- sim.geno-examples
- sim.map-examples
- simFounderSnps-examples
- simulateMissingData-examples
- stepwiseqtl-examples
- strip.partials-examples
- subset.cross-examples
- subset.map-examples
- subset.scanone-examples
- subset.scanoneperm-examples
- subset.scantwo-examples
- subset.scantwoperm-examples
- summary.cross-examples
- summary.fitqtl-examples
- summary.map-examples
- summary.qtl-examples
- summary.scanone-examples
- summary.scanoneperm-examples
- summary.scantwo-examples
- summary.scantwo.old-examples
- summary.scantwoperm-examples
- switch.order-examples
- switchAlleles-examples
- table2map-examples
- test_io
- test_mapqtl_io
- test_qtl
- test_scanonevar
- test_tidyIO
- testaugmentation
- testthat
- top.errorlod-examples
- totmar-examples
- transformPheno-examples
- tryallpositions-examples
- typingGap-examples
- xaxisloc.scanone-examples
Source
Release History
- 1.44-9
- 1.42-8
- 1.42-7
- 1.41-6
- 1.40-8
- 1.39-5
- 1.38-4
- 1.37-11
- 1.36-6
- 1.35-3
- 1.35-1
- 1.34-17
- 1.34-16
- 1.33-7
- 1.32-10
- 1.31-9
- 1.30-4
- 1.29-2
- 1.28-19
- 1.27-10
- 1.26-14
- 1.26-13
- 1.25-15
- 1.24-9
- 1.23-16
- 1.22-21
- 1.21-2
- 1.20-15
- 1.19-20
- 1.18-7
- 1.17-39
- 1.16-6
- 1.16-4
- 1.15-15
- 1.14-2
- 1.13-7
- 1.12-26
- 1.11-12
- 1.10-27
- 1.09-43
- 1.08-56
- 1.08-55
- 1.07-12
- 1.07-11
- 1.06-43
- 1.05-2
- 1.04-53
- 1.04-52
- 1.03-14
- 1.02-26
- 1.01-9
- 1.00-17
- 1.00-16
- 1.00-15
- 0.99-24
- 0.99-22
- 0.98-57
- 0.97-22
- 0.97-21
- 0.96-5
- 0.92-3
- 0.85-4