CRAN
quipu 1.9.0
Summary charts of micro satellite profiles for a set of biological samples
Released Apr 22, 2014 by Reinhard Simon
Dependencies
agricolae 1.2-8 stringr 1.2.0 xtable 1.8-2 shiny 1.0.5 pixmap 0.4-11
Gene banks increasingly use molecular markers for routine characterization of plant collections and farmer managed diversity. The gene bank of the International Potato Center presently uses a micro-satellite marker kit to produce molecular profiles for potato accessions. We have been searching for a compact graphical representation that shows both molecular diversity and accession characteristics - thus permitting biologists and collection curators to have a simple way to interpret molecular data. Inspired by the ancient Andean data recording system we devised a graph that allows for standardized representation while leaving room for updates of the marker kit and the collection of accessions. The graph has been used in several catalogs of potatoes.
Installation
Maven
This package can be included as a dependency from a Java or Scala project by including
the following your project's pom.xml file.
Read more
about embedding Renjin in JVM-based projects.
<dependencies>
<dependency>
<groupId>org.renjin.cran</groupId>
<artifactId>quipu</artifactId>
<version>1.9.0-b36</version>
</dependency>
</dependencies>
<repositories>
<repository>
<id>bedatadriven</id>
<name>bedatadriven public repo</name>
<url>https://nexus.bedatadriven.com/content/groups/public/</url>
</repository>
</repositories>
Renjin CLI
If you're using Renjin from the command line, you load this library by invoking:
library('org.renjin.cran:quipu')
Test Results
This package was last tested against Renjin 0.8.2561 on Dec 22, 2017.