CRAN
tcgsaseq 1.8.1
Time-Course Gene Set Analysis for RNA-Seq Data
Released Dec 7, 2018 by Boris P. Hejblum
This package cannot yet be used with Renjin it depends on other packages which are not available: ggplot2 3.1.0
An older version of this package is
more compatible with Renjin.
Dependencies
ggplot2 3.1.0 GSA 1.03 CompQuadForm 1.4.3 KernSmooth 2.23-15 statmod 1.4.30
Analyze RNA-seq data with variance component score test accounting for data heteroscedasticity through precision weights. Perform both gene-wise and gene set analyses, and can deal with longitudinal data. Method is detailed in: Agniel D & Hejblum BP (2017) Variance component score test for time-course gene set analysis of longitudinal RNA-seq data, Biostatistics, 18(4):589-604.