CRAN

tracerer 2.0.1

Tracer from R

Released Mar 1, 2019 by Richèl J.C. Bilderbeek

Dependencies

jsonlite 1.6 testit 0.9 Rcpp

'BEAST2' () is a widely used Bayesian phylogenetic tool, that uses DNA/RNA/protein data and many model priors to create a posterior of jointly estimated phylogenies and parameters. 'Tracer' () is a GUI tool to parse and analyze the files generated by 'BEAST2'. This package provides a way to parse and analyze 'BEAST2' input files without active user input, but using R function calls instead.

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.cran</groupId>
    <artifactId>tracerer</artifactId>
    <version>2.0.1-b1</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

View build log

Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.cran:tracerer')

Test Results

This package was last tested against Renjin 0.9.2724 on Mar 3, 2019.

• calc_act-examples
• calc_act_r-examples
• calc_ess-examples
• calc_esses-examples
• calc_hpd_interval-examples
• calc_stderr_mean-examples
• calc_summary_stats-examples
• calc_summary_stats_trace-examples
• calc_summary_stats_traces-examples
• get_tracerer_path-examples
• get_tracerer_paths-examples
• is_posterior-examples
• parse_beast_log-examples
• parse_beast_output_files-examples
• parse_beast_posterior-examples
• parse_beast_state_operators-examples
• parse_beast_trees-examples
• remove_burn_in-examples

Source

View GitHub Mirror

Release History

• 2.0.1