CRAN

trioGxE 0.1-1

A data smoothing approach to explore and test gene-environment interaction in case-parent trio data

Released Apr 3, 2013 by Ji-Hyung Shin

This package can be loaded by Renjin but 3 out 4 tests failed.

Dependencies

The package contains functions that 1) estimates gene-environment interaction between a SNP and a continuous non-genetic attribute by fitting a generalized additive model to case-parent trio data, 2) produces graphical displays of estimated interaction, 3) performs permutation test of gene-environment interaction; 4) simulates informative case-parent trios.

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.cran</groupId>
    <artifactId>trioGxE</artifactId>
    <version>0.1-1-b41</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

View build log

Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.cran:trioGxE')

Test Results

This package was last tested against Renjin 0.9.2644 on Jun 2, 2018.

Source

View GitHub Mirror

Release History

0.1-1