CRAN

twoStageGwasPower 0.99.0

Compute thresholds and power for two-stage gwas

Released Sep 1, 2012 by Dirk F Moore

This package can be loaded by Renjin but all tests failed.

This program computes thresholds and power for a two-stage genome-wide association study. It follows the methods described in Skol AD, Scott, LJ, Abecasis GR, Boehnke M (2006) Nature Genetics doi:10.1038/ng1706 and in the "CaTS" computer program (http://www.sph.umich.edu/csg/abecasis/CaTS/)

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.cran</groupId>
    <artifactId>twoStageGwasPower</artifactId>
    <version>0.99.0-b246</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

View build log

Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.cran:twoStageGwasPower')

Test Results

This package was last tested against Renjin 0.9.2689 on Aug 26, 2018.

Source

R

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Release History