CRAN

vbdm 0.0.4

Variational Bayes Discrete Mixture Model

Released Feb 1, 2014 by Benjamin Logsdon

This package can be loaded by Renjin but 1 out 3 tests failed.

Efficient algorithm for solving discrete mixture regression model for rare variant association analysis. Uses variational Bayes algorithm to efficiently search over model space. Outputs an approximate likelihood ratio test as well as variant level posterior probabilities of association.

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.cran</groupId>
    <artifactId>vbdm</artifactId>
    <version>0.0.4-b268</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

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Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.cran:vbdm')

Test Results

This package was last tested against Renjin 0.9.2687 on Aug 24, 2018.

Source

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