CRAN
yCrypticRNAs 0.99.2
Cryptic Transcription Analysis in Yeast
Released Feb 8, 2016 by Nicole Uwimana
This package cannot yet be used with Renjin it depends on other packages which are not available: biomaRt, IRanges, Rsamtools, and data.table 1.11.4
Dependencies
data.table 1.11.4 mclust 5.4.1 Rcpp MESS 0.5.2
Calculates cryptic scores for genes using the ratio (Cheung et al., 2008), the 3' enrichment method (DeGennaro et al., 2013) and the probabilistic method. It also provide methods to estimates cryptic transcription start sites.