DMRcate 1.16.0

Methylation array and sequencing spatial analysis methods

Released Jul 2, 2017 by Tim Peters

This package cannot yet be used with Renjin it depends on other packages which are not available: Gviz 1.24.0, DSS 2.28.0, minfi 1.26.2, and missMethyl 1.14.0


DSS 2.28.0 Gviz 1.24.0 minfi 1.26.2 missMethyl 1.14.0 GenomicRanges 1.32.6 IRanges 2.14.10 limma 3.36.2 S4Vectors 0.18.3 plyr 1.8.4 DMRcatedata 1.16.0

De novo identification and extraction of differentially methylated regions (DMRs) from the human genome using Whole Genome Bisulphite Sequencing (WGBS) and Illumina Infinium Array (450K and EPIC) data. Provides functionality for filtering probes possibly confounded by SNPs and cross-hybridisation. Includes GRanges generation and plotting functions.



Release History