BioConductor

IsoformSwitchAnalyzeR 1.2.0

An R package to Identify, Annotate and Visualize Isoform Switches with Functional Consequences (from RNA-seq data)

Released May 1, 2018 by Kristoffer Vitting-Seerup

Dependencies

cummeRbund 2.22.0 rtracklayer 1.40.5 BSgenome 1.48.0 GenomeInfoDb 1.16.0 VennDiagram 1.6.20 DRIMSeq 1.8.0 RColorBrewer 1.1-2 gridExtra 2.3 futile.logger plyr 1.8.4 edgeR 3.22.3 DBI 1.0.0 reshape2 1.4.3 ggplot2 3.0.0 Biostrings 2.48.0 GenomicRanges 1.32.6 IRanges 2.14.10 tximport 1.8.0

IsoformSwitchAnalyzeR enables identification and analysis of isoform switches with predicted functional consequences (such as gain/loss of protein domains etc) from quantification by Kallisto, Salmon, Cufflinks/Cuffdiff, RSEM etc.

Source

Release History

• 1.2.0
• 1.1.10
• 1.1.09
• 1.1.08
• 1.1.07
• 1.1.06
• 1.1.05
• 1.1.04
• 1.1.03
• 1.1.02
• 1.1.01