BioConductor

LungCancerLines 0.18.0

Reads from Two Lung Cancer Cell Lines

Released May 1, 2018 by Cory Barr

This package can be loaded by Renjin but 2 out 3 tests failed. An older version of this package is more compatible with Renjin.

Dependencies

Rsamtools 1.32.0

Reads from an RNA-seq experiment between two lung cancer cell lines: H1993 (met) and H2073 (primary). The reads are stored as Fastq files and are meant for use with the TP53Genome object in the gmapR package.

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.bioconductor</groupId>
    <artifactId>LungCancerLines</artifactId>
    <version>0.18.0-b2</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

View build log

Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.bioconductor:LungCancerLines')

Test Results

This package was last tested against Renjin 0.9.2644 on Jun 2, 2018.

Source

R

Release History