BioConductor
LungCancerLines 0.18.0
Reads from Two Lung Cancer Cell Lines
Released May 1, 2018 by Cory Barr
This package can be loaded by Renjin but 2 out 3 tests failed.
An older version of this package is
more compatible with Renjin.
Dependencies
Reads from an RNA-seq experiment between two lung cancer cell lines: H1993 (met) and H2073 (primary). The reads are stored as Fastq files and are meant for use with the TP53Genome object in the gmapR package.
Installation
Maven
This package can be included as a dependency from a Java or Scala project by including
the following your project's pom.xml
file.
Read more
about embedding Renjin in JVM-based projects.
<dependencies> <dependency> <groupId>org.renjin.bioconductor</groupId> <artifactId>LungCancerLines</artifactId> <version>0.18.0-b2</version> </dependency> </dependencies> <repositories> <repository> <id>bedatadriven</id> <name>bedatadriven public repo</name> <url>https://nexus.bedatadriven.com/content/groups/public/</url> </repository> </repositories>
Renjin CLI
If you're using Renjin from the command line, you load this library by invoking:
library('org.renjin.bioconductor:LungCancerLines')
Test Results
This package was last tested against Renjin 0.9.2644 on Jun 2, 2018.