BioConductor
RNAprobR 1.12.0
An R package for analysis of massive parallel sequencing based RNA structure probing data
Released Oct 27, 2017 by Nikos Sidiropoulos
This package cannot yet be used with Renjin it depends on other packages which are not available: rtracklayer 1.40.5 and GenomicFeatures 1.32.2
Dependencies
rtracklayer 1.40.5 GenomicFeatures 1.32.2 GenomicAlignments 1.16.0 Biostrings 2.48.0 GenomicRanges 1.32.6 BiocGenerics 0.26.0 IRanges 2.14.10 S4Vectors 0.18.3 plyr 1.8.4 Rsamtools 1.32.3
This package facilitates analysis of Next Generation Sequencing data for which positional information with a single nucleotide resolution is a key. It allows for applying different types of relevant normalizations, data visualization and export in a table or UCSC compatible bedgraph file.