BioConductor

aCGH 1.58.0

Classes and functions for Array Comparative Genomic Hybridization data.

Released Apr 15, 2010 by Peter Dimitrov

Dependencies

cluster 2.0.7-1 survival 2.42-6 multtest 2.36.0 Biobase 2.40.0

Functions for reading aCGH data from image analysis output files and clone information files, creation of aCGH S3 objects for storing these data. Basic methods for accessing/replacing, subsetting, printing and plotting aCGH objects.

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.bioconductor</groupId>
    <artifactId>aCGH</artifactId>
    <version>1.58.0-b3</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

View build log

Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.bioconductor:aCGH')

Test Results

This package was last tested against Renjin 0.9.2687 on Aug 25, 2018.

• aCGH-examples
• aCGH.process-examples
• aCGH.read.Sprocs-examples
• clusterGenome-examples
• colorectal-examples
• fga.func-examples
• find.hmm.states-examples
• gainLoss-examples
• heatmap-examples
• impute.HMM-examples
• impute.lowess-examples
• mergeLevels-examples
• plotFreqStat-examples
• plotGenome-examples
• plotHmmStates-examples
• plotSummaryProfile-examples
• summarize.clones-examples
• threshold.func-examples

Source

Release History

• 1.58.0
• 1.57.0
• 1.54.0
• 1.50.0
• 1.48.0
• 1.46.0