Methods for fitting probe-level models
Released Apr 30, 2018 by Ben Bolstad
affy 1.58.0 Biobase 2.40.0 BiocGenerics 0.26.0 preprocessCore 1.42.0 zlibbioc 1.26.0 gcrma 2.52.0
A package that extends and improves the functionality of the base affy package. Routines that make heavy use of compiled code for speed. Central focus is on implementation of methods for fitting probe-level models and tools using these models. PLM based quality assessment tools.
This package can be included as a dependency from a Java or Scala project by including
the following your project's
about embedding Renjin in JVM-based projects.
<dependencies> <dependency> <groupId>org.renjin.bioconductor</groupId> <artifactId>affyPLM</artifactId> <version>1.56.0-b3</version> </dependency> </dependencies> <repositories> <repository> <id>bedatadriven</id> <name>bedatadriven public repo</name> <url>https://nexus.bedatadriven.com/content/groups/public/</url> </repository> </repositories>
If you're using Renjin from the command line, you load this library by invoking:
This package was last tested against Renjin 0.9.2687 on Aug 25, 2018.