BioConductor
affyPLM 1.56.0
Methods for fitting probe-level models
Released Apr 30, 2018 by Ben Bolstad
Dependencies
affy 1.58.0 Biobase 2.40.0 BiocGenerics 0.26.0 preprocessCore 1.42.0 zlibbioc 1.26.0 gcrma 2.52.0
A package that extends and improves the functionality of the base affy package. Routines that make heavy use of compiled code for speed. Central focus is on implementation of methods for fitting probe-level models and tools using these models. PLM based quality assessment tools.
Installation
Maven
This package can be included as a dependency from a Java or Scala project by including
the following your project's pom.xml
file.
Read more
about embedding Renjin in JVM-based projects.
<dependencies> <dependency> <groupId>org.renjin.bioconductor</groupId> <artifactId>affyPLM</artifactId> <version>1.56.0-b3</version> </dependency> </dependencies> <repositories> <repository> <id>bedatadriven</id> <name>bedatadriven public repo</name> <url>https://nexus.bedatadriven.com/content/groups/public/</url> </repository> </repositories>
Renjin CLI
If you're using Renjin from the command line, you load this library by invoking:
library('org.renjin.bioconductor:affyPLM')
Test Results
This package was last tested against Renjin 0.9.2687 on Aug 25, 2018.