BioConductor

annotationTools 1.54.0

Annotate microarrays and perform cross-species gene expression analyses using flat file databases.

Released Mar 13, 2017 by Alexandre Kuhn

This package can be loaded by Renjin but 7 out 11 tests failed.

Dependencies

Functions to annotate microarrays, find orthologs, and integrate heterogeneous gene expression profiles using annotation and other molecular biology information available as flat file database (plain text files).

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.bioconductor</groupId>
    <artifactId>annotationTools</artifactId>
    <version>1.54.0-b2</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

View build log

Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.bioconductor:annotationTools')

Test Results

This package was last tested against Renjin 0.9.2687 on Aug 25, 2018.