CRAN

GeneNet 1.2.13

Modeling and Inferring Gene Networks

Released Aug 2, 2015 by Korbinian Strimmer

This package is available for Renjin and there are no known compatibility issues.

Dependencies

corpcor 1.6.9 fdrtool 1.2.15 longitudinal 1.1.12

Analyzes gene expression (time series) data with focus on the inference of gene networks. In particular, GeneNet implements the methods of Schaefer and Strimmer (2005a,b,c) and Opgen-Rhein and Strimmer (2006, 2007) for learning large-scale gene association networks (including assignment of putative directions).

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.cran</groupId>
    <artifactId>GeneNet</artifactId>
    <version>1.2.13-b67</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

View build log

Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.cran:GeneNet')

Test Results

This package was last tested against Renjin 0.9.2687 on Aug 25, 2018.

Source

R

View GitHub Mirror

Release History