CRAN

IncucyteDRC 0.5.4

Dose Response Curves from Incucyte Proliferation Assays

Released Apr 23, 2016 by Phil Chapman

Dependencies

magrittr 1.5 DT 0.4 shiny 1.0.5 ggplot2 2.2.1 drc 3.0-1 cowplot 0.9.2 tidyr 0.8.0 XML 3.98-1.10 dplyr 0.7.4

Package to import data generated by the Incucyte Zoom from Essen Biosciences and use this to fit dose response curves using the drc package.

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.cran</groupId>
    <artifactId>IncucyteDRC</artifactId>
    <version>0.5.4-b25</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

View build log

Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.cran:IncucyteDRC')

Test Results

This package was last tested against Renjin 0.9.2625 on Apr 9, 2018.

• calculateCutTimeForGrowthCurve-examples
• calculateCutTimeForIDRCSet-examples
• calculateDRCData-examples
• calculateEC50-examples
• exportDRCDataToDataFrame-examples
• exportDRCDataToDotmatics-examples
• exportDRCDataToPRISM-examples
• exportEC50Data-examples
• fitDoseResponseCurve-examples
• fitGrowthCurvesGrouped-examples
• fitGrowthCurvesIndividual-examples
• importIncucyteData-examples
• importPlatemap-examples
• importPlatemapXML-examples
• makeIncucyteDRCSet-examples
• plotDoseResponseCurve-examples
• plotIncucyteDRCSet-examples
• plotPlatemap-examples
• print.IncucyteDRCPlateData-examples
• print.IncucyteDRCSet-examples
• print.IncucyteDRCSetList-examples
• splitIncucyteDRCPlateData-examples

Source

View GitHub Mirror

Release History

• 0.5.4