CRAN

LCox 0.1.0

A Tool for Selecting Genes Related to Survival Outcomes using Longitudinal Gene Expression Data

Released Jul 17, 2017 by Jiehuan Sun

This package can be loaded by Renjin but all tests failed.

Dependencies

survival 2.42-6 fdapace 0.4.0

Longitudinal genomics data and survival outcome are common in biomedical studies. It is of great interest to select genes related to the survival outcome. LCox is a computationally efficient tool for selecting genes related to the survival outcome using the longitudinal genomics data. LCox is powerful to detect different forms of dependence between the longitudinal biomarkers and the survival outcome.

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.cran</groupId>
    <artifactId>LCox</artifactId>
    <version>0.1.0-b17</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

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Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.cran:LCox')

Test Results

This package was last tested against Renjin 0.9.2689 on Aug 26, 2018.

Source

R

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Release History