CRAN

LDcorSV 1.3.2

Linkage Disequilibrium Corrected by the Structure and the Relatedness

Released May 4, 2017 by Aurélie Siberchicot

This package can be loaded by Renjin but 1 out 4 tests failed.

Four measures of linkage disequilibrium are provided: the usual r^2 measure, the r^2_S measure (r^2 corrected by the structure sample), the r^2_V (r^2 corrected by the relatedness of genotyped individuals), the r^2_VS measure (r^2 corrected by both the relatedness of genotyped individuals and the structure of the sample).

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.cran</groupId>
    <artifactId>LDcorSV</artifactId>
    <version>1.3.2-b12</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

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Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.cran:LDcorSV')

Test Results

This package was last tested against Renjin 0.9.2644 on Jun 1, 2018.

Source

R

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Release History