CRAN

algaeClassify 0.1.0

Determine Phytoplankton Functional Groups Based on Functional Traits

Released May 20, 2019 by Vijay Patil

This package is available for Renjin and there are no known compatibility issues.

Functions designed to facilitate the assignment of morpho-functional group (MFG) classifications to phytoplankton species based on a combination of taxonomy (Class,Order) and a suite of 7 binomial functional traits. Classifications can also be made using only a species list and a database of trait-derived classifications included in the package. MFG classifications are derived from Salmaso et al. (2015) and this reference should be cited when using the package. The 'algaeClassify' package is a product of the GEISHA (Global Evaluation of the Impacts of Storms on freshwater Habitat and Structure of phytoplankton Assemblages), funded by CESAB (Centre for Synthesis and Analysis of Biodiversity) and the USGS John Wesley Powell Center, with data and other support provided by members of GLEON (Global Lake Ecology Observation Network). This software is preliminary or provisional and is subject to revision. It is being provided to meet the need for timely best science. The software has not received final approval by the U.S. Geological Survey (USGS). No warranty, expressed or implied, is made by the USGS or the U.S. Government as to the functionality of the software and related material nor shall the fact of release constitute any such warranty. The software is provided on the condition that neither the USGS nor the U.S. Government shall be held liable for any damages resulting from the authorized on unauthorized use of the software.

Installation

Maven

This package can be included as a dependency from a Java or Scala project by including the following your project's pom.xml file. Read more about embedding Renjin in JVM-based projects.

<dependencies>
  <dependency>
    <groupId>org.renjin.cran</groupId>
    <artifactId>algaeClassify</artifactId>
    <version>0.1.0-b1</version>
  </dependency>
</dependencies>
<repositories>
  <repository>
    <id>bedatadriven</id>
    <name>bedatadriven public repo</name>
    <url>https://nexus.bedatadriven.com/content/groups/public/</url>
  </repository>
</repositories>

View build log

Renjin CLI

If you're using Renjin from the command line, you load this library by invoking:

library('org.renjin.cran:algaeClassify')

Test Results

This package was last tested against Renjin 0.9.2726 on Jul 13, 2019.

Source

View GitHub Mirror

Release History

0.1.0