CRAN
apmsWAPP 1.0
Pre- and Postprocessing for AP-MS data analysis based on spectral counts
Released Apr 22, 2014 by Martina Fischer
This package cannot yet be used with Renjin it depends on other packages which are not available: DESeq, genefilter, Biobase, edgeR, aroma.light, multtest, and seqinr 3.4-5
Dependencies
apmsWAPP provides a complete workflow for the analysis of AP-MS data (replicate single-bait purifications including negative controls) based on spectral counts. It comprises pre-processing, scoring and postprocessing of protein interactions. A final list of interaction candidates is reported: it provides a ranking of the candidates according to their p-values which allow estimating the number of false-positive interactions.