apmsWAPP 1.0

Pre- and Postprocessing for AP-MS data analysis based on spectral counts

Released Apr 22, 2014 by Martina Fischer

This package cannot yet be used with Renjin it depends on other packages which are not available: DESeq, genefilter, Biobase, edgeR, aroma.light, multtest, and seqinr 3.4-5


seqinr 3.4-5 gtools 3.8.1

apmsWAPP provides a complete workflow for the analysis of AP-MS data (replicate single-bait purifications including negative controls) based on spectral counts. It comprises pre-processing, scoring and postprocessing of protein interactions. A final list of interaction candidates is reported: it provides a ranking of the candidates according to their p-values which allow estimating the number of false-positive interactions.



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