g2f 0.2

Find and Fill Gaps in Metabolic Networks

Released Mar 18, 2018 by Daniel Osorio

This package cannot yet be used with Renjin it depends on other packages which are not available: KEGGREST


minval 0.8-1 sybil 2.1.2

For a given metabolic network, this package finds the gaps (metabolites not produced or not consumed in any other reaction), and fills it from the stoichiometric reactions of a reference metabolic reconstruction using a weighting function. Also the option to download all the set of gene-associated stoichiometric reactions for a specific organism from the KEGG database is available.



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