CRAN

jointseg 1.0.2

Joint Segmentation of Multivariate (Copy Number) Signals

Released Jan 11, 2019 by Morgane Pierre-Jean

This package cannot yet be used with Renjin it depends on other packages which are not available: DNAcopy

Dependencies

acnr 1.0.0 matrixStats 0.54.0

Methods for fast segmentation of multivariate signals into piecewise constant profiles and for generating realistic copy-number profiles. A typical application is the joint segmentation of total DNA copy numbers and allelic ratios obtained from Single Nucleotide Polymorphism (SNP) microarrays in cancer studies. The methods are described in Pierre-Jean, Rigaill and Neuvial (2015) .

Source

R
C
C++

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