CRAN
lineup 0.37-11
Lining Up Two Sets of Measurements
Released Mar 6, 2019 by Karl W Broman
This package can be loaded by Renjin but 12 out 26 tests failed.
Dependencies
Tools for detecting and correcting sample mix-ups between two sets of measurements, such as between gene expression data on two tissues.
Installation
Maven
This package can be included as a dependency from a Java or Scala project by including
the following your project's pom.xml file.
Read more
about embedding Renjin in JVM-based projects.
<dependencies>
<dependency>
<groupId>org.renjin.cran</groupId>
<artifactId>lineup</artifactId>
<version>0.37-11-b1</version>
</dependency>
</dependencies>
<repositories>
<repository>
<id>bedatadriven</id>
<name>bedatadriven public repo</name>
<url>https://nexus.bedatadriven.com/content/groups/public/</url>
</repository>
</repositories>
Renjin CLI
If you're using Renjin from the command line, you load this library by invoking:
library('org.renjin.cran:lineup')
Test Results
This package was last tested against Renjin 0.9.2724 on Mar 8, 2019.
- calc.locallod-examples
- combinedist-examples
- combinedist.combinedist_works_in_a_simple_case
- corbetw2mat-examples
- corbetw2mat.corbetw2mat_works_in_the_other_cases_E1
- corbetw2mat.corbetw2mat_works_in_the_other_cases_E2
- corbetw2mat.corbetw2mat_works_in_the_other_cases_E3
- corbetw2mat.corbetw2mat_works_with_what="paired"
- distee-examples
- disteg-examples
- expr-data-examples
- f2cross-examples
- find.gene.pseudomarker-examples
- findCommonID-examples
- fscale-examples
- genepos-examples
- lineupversion-examples
- omitdiag-examples
- plot.lineupdist-examples
- plot2dist-examples
- plotEGclass-examples
- pmap-examples
- pulldiag-examples
- subset.lineupdist-examples
- summary.lineupdist-examples
- testthat