OpenAnalytics Colors Package
General Purpose 'Oai-PMH' Services Client
Harvest Metadata Using OAI-PMH Version 2.0
Trees Creation and Manipulation
Orthogonal Array Package
OpenAnalytics Plots Package
Computation of the Orbit-Aware Quad Census
Arrays with Arbitrary Offsets
Multiple Sclerosis Lesion Segmentation using Magnetic Resonance Imaging (MRI)
Outright Tool for the Analysis of Spatial Inequalities and Segregation
Blinder-Oaxaca Decomposition
Limit Order Book Analytics
A factory of self-describing properties.
'RStudio' Addin for Removing Objects from the Global Environment Based on Patterns and Object Type
objectSignals
Cluster-based factor rotation
Oblique Trees for Classification Data
Oblique Random Forests from Recursive Linear Model Splits
Oblique Random Forests for Right-Censored Time-to-Event Data
Estimate the Population Size for the Mb Capture-Recapture Model
Optimal B-Robust Estimator Tools
An R package to assess agreement between observers.
Collect and Process Physical Activity Direct Observation Data
Observe and Check your Data
Objective Bayesian Model Discrimination in Follow-Up Designs
Sensitivity analysis for Observational studies.
Optimal Classification Roll Call Analysis Software
Optimal Capital Allocations
Estimates PET Neuroreceptor Occupancies
Functions for Multinomial Occupancy Distribution
Analysis of Oceanographic Data
Biophysical Oceanography Tools
Cartography for Statistical Analysis
A Plotting Toolbox for 2D Oceanographic Data
Visualisation of Oceanographic Data and Model Output
Oceanographic Data Sets for 'oce' Package
Order Constrained Solutions in k-Means Clustering
Regression for Rank-Indexed Compositional Data
Bayesian Online Changepoint Detection
Operating characteristics plus sample size and local fdr for microarray experiments
R Helper for OData Web Services
Open Document Databases (.odb) management
Connect to ODBC Compatible Databases (using the DBI Interface)
Betting Odds Conversion
Odds Ratios, Contingency Table, and Model Significance from a Generalized Linear Model Object
Odds Ratio Calculation for GAM(M)s & GLM(M)s
C++ ODE Solvers Compiled on-Demand
Network of Differential Equations
Sensitivity Analysis of Ordinary Differential Equations
Solvers for Ordinary Differential Equations
Sweave processing of Open Document Format (ODF) files
Support for odfWeave on the survey package
Convert 'ODK' or 'XLSForm' to 'SPSS' Data Frame
'Open Data Kit' ('ODK') R API
Tools to Convert ODM Files
One-Sided Dynamic Principal Components
Optimal design and performance of random intercept and slope models.
Optimal Design and Statistical Power of Multilevel Randomized Trials
Statistical Methods for Outcome-Dependent Sampling Designs
Outlier detection in multiple sequence alignments
Observatory of Economic Complexity API Wrapper and Utility Program
Search and Extract Data from the OECD
Orthogonalizing EM: Penalized Regression for Big Tall Data
Manipulation of Microsoft Word and PowerPoint Documents
A Meta-Analysis Approach with Filtering for Identifying Gene-Level Gene-Environment Interactions with Genetic Association Data
Objective General Index
Estimation of Ordered Generalized Linear Models
Outlier Gene Set Analysis
OGA+HDIC+Trim and High-Dimensional Linear Regression Models
R Client for Ohmage 2 Server
Ordered Homogeneity Pursuit Lasso for Group Variable Selection
Tomoka Ohta D Statistics
Data sets and supplements (OpenIntro)
Crosstab and Statistical Tests for OII MSc Stats Course
Survival analysis supplement to OpenIntro guide
Multivariate Methods Based on the Oja Median and Related Concepts
Retrieve Oklahoma Mesonet climatological data
Open Location Code Handling in R
Preprocessing tools for oligonucleotide arrays
Classes for high-throughput arrays supported by oligo and crlmm
Dataset samples for the oligo package
Oligo Specificity System
Optimized local intensity-dependent normalisation of two-color microarrays
Graphical user interface for OLIN
OLS growth curve trajectories
Tools for Building OLS Regression Models
R wrapper for the OMA REST API
filter the molecular descriptors for QSAR
Multiple co-inertia analysis of omics datasets
High-quality circular visualization of omics data
Poly-Omic Prediction of Complex TRaits
Visual Exploration of Omic Datasets Using a Shiny App
Exposome and omic data associatin and integration analysis
'--omics' Data Analysis Toolbox
Classification and Feature Selection for 'Omics' Datasets
Perform Two-Way Orthogonal Partial Least Squares
Cross omic genetic fingerprinting
Univariate Bootstrapping and Other Things
A Modified Fisher’s Method to Test Overall Gene-Level Effect
Model and Solve Mixed Integer Linear Programs
A Solver for 'ompr' that Uses the R Optimization Infrastructure ('ROI')
A Metabolomics Analysis Tool for Intuitive Figures and Convenient Metadata Collection
Test of Between-Group Differences in the Onset of Senescence
OnASSIs Ontology Annotation and Semantic SImilarity software
OnassisJavaLibs, java libraries to run conceptmapper and semantic similarity
Identifying Genes Overexpressed in Subsets of Tumors from Tumor-Normal mRNA Expression Data
Maximum likelihood tree models for oncogenesis
A tool to identify potentially oncogenic genes
Forward Genetic Simulation of Cancer Progression with Epistasis
Estimating oncogenetic trees
Machine Learning for S.E.O
Planning, Conducting, and Analysing Single-Arm Phase II Studies
A graphical interface designed to facilitate analysis of microarrays and miRNA/RNA-seq data on laptops
Prediction of condition-specific transcription factor interactions
Fast Onehot Encoding for Data.frames
Construction of Genetic Maps in Experimental Crosses: Full-Sib, RILs, F2 and Backcrosses
One Rule Machine Learning Classification Algorithm with Enhancements
One-Dimensional Soli-Expression by Nonlinear Stochastic Embedding (OneSENSE)
Efficient Authenticated Interaction with the O*NET API
Deal with one and two (normal) samples
One-Way Tests in Independent Groups Designs
Octonions and Quaternions
Detect Changepoints in Multivariate Time Series
Online Principal Component Analysis
Online Fitting of Time-Adaptive Lasso Vector Auto Regression
Orthogonal Nonlinear Least-Squares Regression
R Interface to 'ONNX'
Ontology traversal and search
Functions for Reading Ontologies into R
Functions for Visualising Sets of Ontological Terms
Functions for Calculating Ontological Similarities
processing of ontologies of anatomy, cell lines, and so on
Out of Bag Learning Curve
Ozgur-Ozlem Miscellaneous
Class Unions, Matrix Operations, and Color Schemes for OOMPA
Data to Illustrate OOMPA Algorithms
Optimistic Optimization in R
'Opal' Data Repository Client and 'DataSHIELD' Utils
Opasnet Modelling Environment Utility Functions
Optimal Design of Experiments
Outer-product emulator
Option Pricing and Estimation of Financial Models in R
Client to Access 'Openaddresses' Data
Tools for the Analysis of Air Pollution Data
Interface to the OpenCage API
Interface Allowing R to Use OpenCL
Producing and Reproducing Results
OpenCPU Demo apps.
opencpu object encoder/decoder
Open Population Capture-Recapture
Bindings to 'OpenCV' Computer Vision Library
Hierarchical Gating Pipeline for flow cytometry data
Interface for OpenDota API
EBGM Disproportionality Scores for Adverse Event Data Mining
An Image Processing Toolkit
Data Sets and Supplemental Functions from 'OpenIntro' Textbooks
Open Machine Learning and Open Data Platform
Control Number of OpenMP Threads Dynamically
Extended Structural Equation Modelling
Apache OpenNLP Tools Interface
Apache OpenNLP Jars and Basic English Language Models
openNLP Models for English
openNLP Models for Spanish
Multiplex PCR Primer Design and Analysis
Shiny Application for Multiplex PCR Primer Design and Analysis
Tools to Analyze Repertory Grid Data
Client for the Data API of openSenseMap.org
Toolkit for Encryption, Signatures and Certificates Based on OpenSSL
An Open Source Implementation of the 'ArcGIS' Toolbox 'STARS'
Access to Open Street Map Raster Images
Tools for Creating and Analysing Air Trajectory Data
Automated Method for Verbal Autopsy
API Client for ENGIE's Open Wind Farm
Read, Write and Edit XLSX Files
Online Prediction by Expert Aggregation
An R package of Data Importing, Processing and Analysis for Opera High Content Screening System
Utilities for Working with R's Operators
Additional Binary Operators
FHCRC Nelson Lab OperonHumanV3 Annotation Data (OperonHumanV3)
Open Perimetry Interface
Analysing Phenotype Microarray and Growth Curve Data
Example data for analysing OmniLog(R) Phenotype Microarray data
Comprehensive analysis of transciptome data
Package for analysis and visualization of metagenes
Outlier profile and pathway analysis in R
Routing Distribution, Broadcasts, Transmissions and Receptions in an Opportunistic Network
Optimal Project Prioritization
Optimal Power Space Transformation
Optimal Designs for the 5-Parameter Logistic Model
Optimal Combinations of Diagnostic Tests Based on AUC
'surv' Object Confidence Bands Optimized by Area
Optimal Block Designs for Two-Colour cDNA Microarray Experiments
Estimation of optimal number of biomarkers for two-group microarray based classifications at a given error tolerance level for various classification rules
Determine Optimal Clustering Algorithm and Number of Clusters
Optimal Designs for Estimating the Slope Divided by the Intercept
Tools to Support Optimization Possibly with Bounds and Masks
Near-Optimal and Balanced Group-Sequential Designs for Clinical Trials with Continuous Outcomes
Estimation of value and hedging strategy of call and put options.
Likelihood Based Optimal Partitioning and Indicator Species Analysis
Set Options if Unset
Command-Line Parsing for an R World
Standard Benchmark Optimization Functions
Computing Optimal Cutpoints in Diagnostic Tests
Algorithms for D-, A-, and IV-Optimal Designs
Optimal Timing Identification
Confidence Regions for Optima
R port of the Scilab optimbase module
Create the Best Train for Classification Models
Flexible Optimization of Complex Loss Functions with State and Parameter Space Constraints
Optimos Prime Helps Calculate Autoecological Data for Biological Species
Parallel Version of the L-BFGS-B Optimization Method
A Replacement and Extension of the 'optim' Function
R Port of the 'Scilab' Optimsimplex Module
Choosing the Sample Strategy
Model Based Diagnostics for Multivariate Cluster Analysis
Expanded Replacement and Extension of the 'optim' Function
Optimal Two and Three Stage Designs for Single-Arm and Two-Arm Randomized Controlled Trials with a Long-Term Binary Endpoint
Optional Types and Pattern Matching
Option Pricing with Efficient Simulation Algorithms
Utilizes the Black-Scholes Option Pricing Model to Perform Strategic Option Analysis and Plot Option Strategies
Simplifies and Automates Analyzing and Reporting OptiQuant's log Data
Financial Functions & More
Optimal scaling
Optimum Contribution Selection and Population Genetics
Optimal Mixture Weights in Multiple Importance Sampling
Linear, Quadratic, and Rational Optimization
Estimating the Optimal Number of Migration Edges from 'Treemix'
Functions for Optimal Matching
Command Line Option Parser
Optimal Partitioning of Similarity Relations
Optimization Toolbox for Solving Linear Systems
Optimal Row-Column Designs for Two-Colour cDNA Microarray Experiments
Optimized Regression Discontinuity Designs
Optimal Trees in Weighted Graphs
Optimal Level of Significance for Regression and Other Statistical Tests
Targeted Stable Balancing Weights Using Optimization
OPUS Miner Algorithm for Filtered Top-k Association Discovery
Statistical Methods for Modeling Operational Risk
Optimal p-value weighting with independent information
Convenient Tools for Working with Oracle Databases
Computation of Graphlet Orbit Counts in Sparse Graphs
Several confidence intervals for the odds ratio
Subspace Clustering Based on Arbitrarily Oriented Projected Cluster Generation
Order Restricted Clustering for Microarray Experiments
Omnidirectional R Code Snippets
Estimate Procedure in Case of First Order Autocorrelation
Modelling comparison data with ordinal response
Likelihood-Based Continual Reassessment Method (CRM) Dose Finding Designs
Separating Location and Dispersion in Ordinal Regression Models
Ordinal Dominance Statistics
Estimate parent distributions with data of several order statistics
Orderbook visualization/Charting software
Ordered Lasso and Time-Lag Sparse Regression
Similarities of Ordered Gene Lists
Test, Check, Verify, Investigate the Monotonic Properties of Vectors
Sampling from Order Statistics of New Families of Distributions
Efficiently Generates Random Order Statistic Variables
Least Squares, Logistic, and Cox-Regression with Ordered Predictors
Ordinated Diet Breadth
Regression Models for Ordinal Data
Ordinal Data Clustering, Co-Clustering and Classification
Ordinal Regression Analysis for Continuous Scales
Ordinal Forests: Prediction and Variable Ranking with Ordinal Target Variables
Ordinal Regression for High-Dimensional Data
Co-Clustering of Ordinal Data via Latent Continuous Random Variables
Biplot representations of ordinal variables
Penalized Ordinal Regression
Analysis of Repeatability and Reproducibility Studies with Ordinal Measurements
Ordinal Logic Regression
Compute least squares estimates of one bounded or two ordered isotonic regression curves
Concurrent Generation of Ordinal and Normal Data with Given Correlation Matrix and Marginal Distributions
Selection and/or Smoothing of Ordinal Predictors
An R Interface to the Onigmo Regular Expression Library
Connector to the Objective Revision Evaluation Service (ORES)
Open Reading Frames in Genomics
Organising Projects
Genome wide annotation for Anopheles
Genome wide annotation for Arabidopsis
Genome wide annotation for Bovine
Genome wide annotation for Worm
Genome wide annotation for Canine
Genome wide annotation for Fly
Genome wide annotation for Zebrafish
Genome wide annotation for E coli strain K12
Genome wide annotation for E coli strain Sakai
Genome wide annotation for Chicken
Genome wide annotation for Human
A data package containing annotation data for org.Hs.ipi.db
Genome wide annotation for Mouse
Genome wide annotation for Rhesus
Genome wide annotation for Malaria
Genome wide annotation for Chimp
Genome wide annotation for Rat
Genome wide annotation for Yeast
Genome wide annotation for Streptomyces coelicolor
Genome wide annotation for Pig
Genome wide annotation for Toxoplasma gondii
Genome wide annotation for Xenopus
dplyr-based Access to Bioconductor Annotation Resources
Software to enable the smooth interfacing of different database packages
Organic Mass Spectrometry
Helper Functions for Org Files
Order-restricted Information Criterion-based Clustering Algorithm
Support for orientation data
Generalized Framework for Cross-Validation
Fast Spatial Ancestry via Flexible Allele Frequency Surfaces
Fetch Species Origin Data from the Web
Operations Research LOCational Analysis Models
Spanish version of orloca package. Modelos de localizacion en investigacion operativa
ORMDR
Advanced Plotting of Ordinal Regression Models
Rigorous - DICOM Input / Output
Rigorous - NIfTI + ANALYZE + AFNI : Input / Output
Rigorous - Positron Emission Tomography
Order Restricted Assessment Of Microarray Titration Experiments
Southern Ocean Frontal Distributions (Orsi)
Converting Odds Ratio to Relative Risk in Cohort Studies with Partial Data Information
Multivariate Logistic Regressions Using Orthogonalized Residuals.
An Orthogonality Constrained Optimization Approach for Semi-Parametric Dimension Reduction Problems
Orthogonal B-Spline Basis Functions
Dynamic Panel Models with Orthogonal Reparameterization of Fixed Effects
Collection of functions for orthogonal and orthonormal polynomials
OSAT: Optimal Sample Assignment Tool
Orthodromic Spatial Clustering
Generation of Customizable, Discretized Time Series of Oscillating Species
Oscope - A statistical pipeline for identifying oscillatory genes in unsynchronized single cell RNA-seq
One-Sided Cross-Validation
Orthogonal Signal Deconvolution for Spectra Deconvolution in GC-MS and GCxGC-MS Data
Design and analysis of observational studies
Finds an Optimal System of Distinct Representatives
Recursive Quoted Language Expansion
Open Source Initiative API Connector
OpenStreetMap and R
Import 'OpenStreetMap' Data as Simple Features or Spatial Objects
Object Oriented Simulator of Marine Ecosystems
Bespoke Images of 'OpenStreetMap' Data
Add a Scale Bar to 'OpenStreetMap' Plots
Quadratic Programming Solver using the 'OSQP' Library
Interface Between R and the OpenStreetMap-Based Routing Service OSRM
Wrapper for the 'OSRM' API
Temporal Estimation of Isotopic Values
Over Sampling for Time Series Classification
Mean Partition, Uncertainty Assessment, Cluster Validation and Visualization Selection for Cluster Analysis
Optimal Trees Ensembles for Regression, Classification and Class Membership Probability Estimation
Inference for Optimal Transport
An R Wrapper for the 'OpenTripPlanner' REST API
Robust Model-Based Clustering
Variable Selection for Optimal Treatment Decision
Online Time Series Anomaly Detectors
Provides structure and functions for the analysis of OTU data
Summarizing OTU Table Regarding the Composition, Abundance and Beta Diversity of Abundant and Rare Biospheres
North Temperate Lakes - Microbial Observatory 16S Time Series Data and Functions
Over Time Variable Plots
Ornstein-Uhlenbeck Models for Phylogenetic Comparative Hypotheses
Bayesian Reconstruction of Disease Outbreaks by Combining Epidemiologic and Genomic Data
A Collection of Disease Outbreak Data
Basic Tools for the Analysis of Disease Outbreaks
AAPOR Survey Outcome Rates
Outlier detection using quantile regression on the M-A scatterplots of high-throughput data
Outlier Detection using quantile regression for Censored Data
Outlier Detection
Outlier Detection for Multi-replicated High-throughput Data
Tests for outliers
Draws Overview of Outliers (O3) Plots
Regression Table for Publication
Analysis of Evolutionary Rates in an OU Framework
Estimates of Coefficient of Overlapping for Animal Activity Patterns
Estimation of Overlapping in Empirical Distributions
Test Overlapping of Polygons Against Random Rotation
Tools for Writing MCMC
Open Welfare Data Brazil
Optimal Weight Exchange Algorithm for Optimal Designs for Three Models
OpenWeatherMap API Wrapper
Interface to OGC Web-Services (OWS)
Interface to 'OxCal' Radiocarbon Calibration
Oxycline Index from Matrix Echograms
Processing of Oxy-Bisulfite Microarray Data
Plot the Australian Coastline and States
