Renjin.org | Packages

Diversification Rate Estimation and Fast Simulation of Reconstructed Phylogenetic Trees under Tree-Wide Time-Heterogeneous Birth-Death Processes Including Mass-Extinction Events

tesseract

Open Source OCR Engine

test1cdf

test2cdf

test3cdf

test3probe

Probe sequence data for microarrays of type test3

testassay

A Hypothesis Testing Framework for Validating an Assay for Precision

TestCor

FWER and FDR Controlling Procedures for Multiple Correlation Tests

TestDataImputation

Missing Item Responses Imputation for Test and Assessment Data

TestDimorph

Analysis of the Interpopulation Degree of Sexual Dimorphism using Summary Statistics

testDriveR

Teaching Data for Statistics and Data Science

tester

Tests and checks characteristics of R objects

testextra

Extract Test Blocks

testforDEP

Dependence Tests for Two Variables

TestFunctions

Test Functions for Simulation Experiments and Evaluating Optimization and Emulation Algorithms

TestingSimilarity

Bootstrap Test for Similarity of Dose Response Curves Concerning the Maximum Absolute Deviation

testit

A Simple Package for Testing R Packages

TestScorer

GUI for Entering Test Items and Obtaining Raw and Transformed Scores

TestSurvRec

Statistical tests to compare two survival curves with recurrent events

testthat

Unit Testing for R

testthatsomemore

A mocking, stubbing, and file testing framework extending testthat

testthis

Utils and 'RStudio' Addins to Make Testing Even More Fun

tetraclasse

Satisfaction Analysis using Tetraclasse Model and Llosa Matrix

TeXCheckR

Parses LaTeX Documents for Errors

TexExamRandomizer

Personalizes and Randomizes Exams Written in 'LaTeX'

texmex

Statistical Modelling of Extreme Values

texmexseq

Treatment Effect eXplorer for Microbial Ecology eXperiments (using Sequence Counts)

TExPosition

Two-Table ExPosition

texPreview

Compile and Preview Snippets of 'LaTeX' in 'RStudio'

texreg

Conversion of R Regression Output to LaTeX or HTML Tables

text2speech

Text to Speech

text2vec

Modern Text Mining Framework for R

textcat

N-Gram Based Text Categorization

textclean

Text Cleaning Tools

textdata

Download and Load Various Text Datasets

texteffect

Discovering Latent Treatments in Text Corpora and Estimating Their Causal Effects

textfeatures

Extracts Features from Text

TextForecast

Regression Analysis and Forecasting Using Textual Data from a Time-Varying Dictionary

textgRid

Praat TextGrid Objects in R

textile

Textile Images

textir

Inverse Regression for Text Analysis

textmineR

Functions for Text Mining and Topic Modeling

textmining

Integration of Text Mining and Topic Modeling Packages

textometry

Textual Data Analysis Package used by the TXM Software

TextoMineR

Textual Statistics

textrank

Summarize Text by Ranking Sentences and Finding Keywords

textreadr

Read Text Documents into R

textrecipes

Extra 'Recipes' for Text Processing

textreg

n-Gram Text Regression, aka Concise Comparative Summarization

TextRegression

Predict continuous valued outputs associated with text documents.

textreuse

Detect Text Reuse and Document Similarity

textshape

Tools for Reshaping Text

textstem

Tools for Stemming and Lemmatizing Text

textTinyR

Text Processing for Small or Big Data Files

textutils

Utilities for Handling Strings and Text

TFARM

Transcription Factors Association Rules Miner

TFBSTools

Software Package for Transcription Factor Binding Site (TFBS) Analysis

tfdatasets

Interface to 'TensorFlow' Datasets

TFDEA

Technology Forecasting using DEA (Data Envelopment Analysis)

tfdeploy

Deploy 'TensorFlow' Models

TFEA.ChIP

Analyze Transcription Factor Enrichment

tfer

Forensic Glass Transfer Probabilities

tfestimators

Interface to 'TensorFlow' Estimators

TFHAZ

Transcription Factor High Accumulation Zones

tfio

Interface to 'TensorFlow IO'

TFisher

Optimal Thresholding Fisher's P-Value Combination Method

TFMPvalue

Efficient and Accurate P-Value Computation for Position Weight Matrices

tfplot

Time Frame User Utilities

tframe

Time Frame Coding Kernel

tframePlus

Time Frame Coding Kernel Extensions

tfruns

Training Run Tools for 'TensorFlow'

tfse

Tools for Script Editing

TFutils

TFX

R API to TrueFX(tm)

tgcd

Thermoluminescence Glow Curve Deconvolution

tggd

The Standard Distribution Functions for the Truncated Generalised Gamma Distribution

tglm

Binary Regressions under Independent Student-t Priors

tgp

Bayesian Treed Gaussian Process Models

tgram

Compute and Plot Tracheidograms

TGS

Rapid Reconstruction of Time-Varying Gene Regulatory Networks

TGUICore

Teaching GUI - Core functionality

TGUITeaching

Teaching GUI - prototype

TH.data

TH's Data Archive

thankr

Find Out Who Maintains the Packages you Use

ThankYouStars

Give your Dependencies Stars on GitHub!

theiaR

Download and Manage Data from Theia

themetagenomics

Exploring Thematic Structure and Predicted Functionality of 16s rRNA Amplicon Data

Thermimage

Thermal Image Analysis

ThermIndex

Calculate Thermal Indexes

thermocouple

Temperature Measurement with Thermocouples, RTD and IC Sensors

theseus

Analysis and Visualization Tools for Microbial Community Data

thgenetics

Genetic Rare Variants Tests

thief

Temporal Hierarchical Forecasting

Thinknum

Thinknum Data Connection

thinkr

Tools for Cleaning Up Messy Files

thor

Interface to 'LMDB'

ThreeArmedTrials

Design and Analysis of Clinical Non-Inferiority or Superiority Trials with Active and Placebo Control

threeboost

Thresholded variable selection and prediction based on estimating equations

threeBrain

3D Brain Visualization

ThreeGroups

ML Estimator for Baseline-Placebo-Treatment (Three-Group) Experiments

threejs

Interactive 3D Scatter Plots, Networks and Globes

ThreeWay

Three-Way Component Analysis

threewords

Represent Precise Coordinates in Three Words

threg

Threshold Regression

thregI

Threshold Regression for Interval-Censored Data with a Cure Rate Option

Thresher

Threshing and Reaping for Principal Components

ThresholdROC

Optimum Threshold Estimation

threshr

Threshold Selection and Uncertainty for Extreme Value Analysis

thriftr

Apache Thrift Client Server

thsls

Three-Stage Least Squares Estimation for Systems of Simultaneous Equations

tibble

Simple Data Frames

tibbletime

Time Aware Tibbles

tibbrConnector

R Interface to TIBCO 'tibbr'

TickExec

Execution Functions for Tick Data Back Test

tictactoe

Tic-Tac-Toe Game

tictoc

Functions for timing R scripts, as well as implementations of Stack and List structures.

TiddlyWikiR

Create dynamic reports using a TiddlyWiki template.

TideCurves

Analysis and Prediction of Tides

TideHarmonics

Harmonic Analysis of Tides

Tides

Quasi-Periodic Time Series Characteristics

TideTables

Tide Analysis and Prediction of Predominantly Semi-Diurnal Tides

tidybayes

Tidy Data and 'Geoms' for Bayesian Models

tidyboot

Tidyverse-Compatible Bootstrapping

tidycensus

Load US Census Boundary and Attribute Data as 'tidyverse' and 'sf'-Ready Data Frames

tidycode

Analyze Lines of R Code the Tidy Way

tidygenomics

Tidy Verbs for Dealing with Genomic Data Frames

tidygraph

A Tidy API for Graph Manipulation

tidyhydat

Extract and Tidy Canadian 'Hydrometric' Data

tidyimpute

Imputation the Tidyverse Way

tidyinftheo

Some Information-Theoretic Functions in the 'Tidy' Style

tidyjson

A Grammar for Turning 'JSON' into Tidy Tables

tidylog

Logging for 'dplyr' Functions

tidyLPA

Easily Carry Out Latent Profile Analysis (LPA) Using Open-Source or Commercial Software

tidymodels

Easily Install and Load the 'Tidymodels' Packages

tidymv

Tidy Model Visualisation for Generalised Additive Models

tidync

A Tidy Approach to 'NetCDF' Data Exploration and Extraction

tidyposterior

Bayesian Analysis to Compare Models using Resampling Statistics

tidypredict

Run Predictions Inside the Database

tidyquant

Tidy Quantitative Financial Analysis

tidyqwi

A Convenient API for Accessing United States Census Bureau's Quarterly Workforce Indicator

tidyr

Easily Tidy Data with 'spread()' and 'gather()' Functions

tidyRSS

Tidy RSS for R

tidyrules

Obtain Rules from Rule Based Models as Tidy Dataframe

tidyselect

Select from a Set of Strings

tidystats

Create a Tidy Statistics Output File

tidystopwords

Customizable Lists of Stopwords in 53 Languages

tidystringdist

String Distance Calculation with Tidy Data Principles

tidytext

Text Mining using 'dplyr', 'ggplot2', and Other Tidy Tools

tidytidbits

A Collection of Tools and Helpers Extending the Tidyverse

tidytransit

Read, Validate, Analyze, and Map Files in the General Transit Feed Specification

tidytree

A Tidy Tool for Phylogenetic Tree Data Manipulation

tidyverse

Easily Install and Load the 'Tidyverse'

tidyxl

Read Untidy Excel Files

tiff

Read and write TIFF images

tiger

TIme series of Grouped ERrors

tigerhitteR

Pre-Process of Time Series Data Set in R

tigerstats

R Functions for Elementary Statistics

tigger

Infers Novel Immunoglobulin Alleles from Sequencing Data

tightClust

Tight Clustering

tigre

Transcription factor Inference through Gaussian process Reconstruction of Expression

tigreBrowserWriter

'tigreBrowser' Database Writer

tigris

Load Census TIGER/Line Shapefiles

tikzDevice

R Graphics Output in LaTeX Format

tilegramsR

R Spatial Data for Tilegrams

tileHMM

Hidden Markov Models for ChIP-on-Chip Analysis

TileManager

Tile Manager

TilePlot

Characterization of functional genes in complex microbial communities using tiling DNA microarrays

tiler

Create Geographic and Non-Geographic Map Tiles

tilingArray

Transcript mapping with high-density oligonucleotide tiling arrays

tilting

Variable Selection via Tilted Correlation Screening Algorithm

time2event

Survival and Competing Risk Analyses with Time-to-Event Data as Covariates

timechange

Efficient Changing of Date-Times

timecourse

Statistical Analysis for Developmental Microarray Time Course Data

timeDate

Rmetrics - Chronological and Calendar Objects

timedelay

Time Delay Estimation for Stochastic Time Series of Gravitationally Lensed Quasars

timeit

Easy profiling of R functions

timekit

A Collection of Tools for Working with Time Series in R

timeline

Timelines for a Grammar of Graphics

timelineR

Visualization for Time Series Data

timelineS

Timeline and Time Duration-Related Tools

TimeMachine

Time Machine

timeordered

Time-Ordered and Time-Aggregated Network Analyses

TimeProjection

Time Projections

timeR

Time Your Codes

timereg

Flexible Regression Models for Survival Data

timeROC

Time-Dependent ROC Curve and AUC for Censored Survival Data

TimerQuant

Timer Quantification

timesboot

Bootstrap computations for time series objects

timescape

Patient Clonal Timescapes

timeSeq

Detecting Differentially Expressed Genes in Time Course RNA-Seq Data

timeSeries

Rmetrics - Financial Time Series Objects

TimeSeries.OBeu

Time Series Analysis 'OpenBudgets.eu'

timeseriesdb

Manage Time Series for Official Statistics with R and PostgreSQL

timetk

A Tool Kit for Working with Time Series in R

timetools

Seasonal/Sequential (Instants/Durations, Even or not) Time Series

timetree

Interface to the TimeTree of Life Webpage

timevis

Create Interactive Timeline Visualizations in R

TimeVTree

Survival Analysis of Time Varying Coefficients Using a Tree-Based Approach

TimeWarp

Date Calculations and Manipulation

TIMP

Fitting Separable Nonlinear Models in Spectroscopy and Microscopy

timsac

Time Series Analysis and Control Package

TIN

Transcriptome instability analysis

tinesath1cdf

tinesath1probe

Probe sequence data for microarrays of type tinesath1

Tinflex

A Universal Non-Uniform Random Number Generator

TinnR

Resources of Tinn-R GUI/Editor for R Environment

TInPosition

Inference Tests for TExPosition

tinsel

Transform Functions using Decorators

tint

'tint' is not 'Tufte'

tinter

Generate a Monochromatic Palette

tinyProject

A Lightweight Template for Data Analysis Projects

tinytest

Lightweight but Feature Complete Unit Testing Framework

tinytex

Helper Functions to Install and Maintain 'TeX Live', and Compile 'LaTeX' Documents

tiobeindexr

Extract 'TIOBE' Programming Index Tables for the Latest Month

TipDatingBeast

Using Tip Dates with Phylogenetic Trees in BEAST (Software for Phylogenetic Analysis)

tipom

Automated measure-based classification for flint tools

TippingPoint

Enhanced Tipping Point Displays the Results of Sensitivity Analyses for Missing Data

tippy

Add Tooltips to 'R markdown' Documents or 'Shiny' Apps

tipr

Tipping Point Analyses

tis

Time Indexes and Time Indexed Series

TissueEnrich

Tissue-specific gene enrichment analysis

tissueTreg

TWGBS and RNA-seq data from tissue T regulatory cells from mice

titan

Titration analysis for mass spectrometry data

TITAN2

Threshold Indicator Taxa Analysis

TitanCNA

Subclonal copy number and LOH prediction from whole genome sequencing of tumours

titanic

Titanic Passenger Survival Data Set

titeIR

Isotonic Designs for Phase 1 Trials with Late-Onset Toxicities

titrationCurves

Acid/Base, Complexation, Redox, and Precipitation Titration Curves

TKF

Pairwise Distance Estimation with TKF91 and TKF92 Model

tkrgl

'TK' Widget Tools for 'rgl'

tkrplot

TK Rplot

tkRplotR

Display Resizable Plots

tkWidgets

R based tk widgets

Tlasso

Non-Convex Optimization and Statistical Inference for Sparse Tensor Graphical Models

TLBC

Two-Level Behavior Classification

TLdating

Tools for Thermoluminescences Dating

tlemix

Trimmed Maximum Likelihood Estimation

tlm

Effects under Linear, Logistic and Poisson Regression Models with Transformed Variables

tlmec

Linear Student-t Mixed-Effects Models with Censored Data

TLMoments

Calculate TL-Moments and Convert Them to Distribution Parameters

tlnise

Two-Level Normal Independent Sampling Estimation

tls

Tools of Total Least Squares in Error-in-Variables Models

tm

Text Mining Package

tm.plugin.alceste

Import texts from files in the Alceste format using the tm text mining framework

tm.plugin.dc

Text Mining Distributed Corpus Plug-In

tm.plugin.europresse

Import Articles from 'Europresse' Using the 'tm' Text Mining Framework

tm.plugin.factiva

Import Articles from 'Factiva' Using the 'tm' Text Mining Framework

tm.plugin.lexisnexis

Import Articles from 'LexisNexis' Using the 'tm' Text Mining Framework

tm.plugin.mail

Text Mining E-Mail Plug-in

tm.plugin.webmining

Retrieve Structured, Textual Data from Various Web Sources

tm1r

The Integration Between 'IBM COGNOS TM1' and R

tmap

Thematic Maps

tmaptools

Thematic Map Tools

TMB

Template Model Builder: A General Random Effect Tool Inspired by 'ADMB'

tmbstan

MCMC Sampling from 'TMB' Model Object using 'Stan'

TmCalculator

Melting Temperature of Nucleic Acid Sequences

tmcn

A Text Mining Toolkit for Chinese

TMDb

Access to TMDb API - Apiary

tmg

Truncated Multivariate Gaussian Sampling

Tmisc

Turner Miscellaneous

TMixClust

Time Series Clustering of Gene Expression with Gaussian Mixed-Effects Models and Smoothing Splines

tmle

Targeted Maximum Likelihood Estimation

tmle.npvi

Targeted Learning of a NP Importance of a Continuous Exposure

tmlenet

Targeted Maximum Likelihood Estimation for Network Data

tmod

Feature Set Enrichment Analysis for Metabolomics and Transcriptomics

tmpm

Trauma Mortality Prediction Model

tmt

Estimation of the Rasch Model for Multistage Tests

tmuxr

Manage 'tmux'

tmvmixnorm

Sampling from Truncated Multivariate Normal and t Distributions

tmvnsim

Truncated Multivariate Normal Simulation

tmvtnorm

Truncated Multivariate Normal and Student t Distribution

tnam

Temporal Network Autocorrelation Models (TNAM)

TNC

Temporal Network Centrality (TNC) Measures

tnet

Software for Analysis of Weighted, Two-Mode, and Longitudinal Networks

Tnseq

Identification of Conditionally Essential Genes in Transposon Sequencing Studies

TnT

Interactive Visualization for Genomic Features

toaster

Big Data in-Database Analytics that Scales with Teradata Aster Distributed Platform

todor

Find All TODO Comments and More

tofsims

Import, process and analysis of Time-of-Flight Secondary Ion Mass Spectrometry (ToF-SIMS) imaging data

tofsimsData

Import, process and analysis of ToF-SIMS imaging data

togglr

'Toggl.com' Api for 'Rstudio'

tokenbrowser

Create Full Text Browsers from Annotated Token Lists

tokenizers

Fast, Consistent Tokenization of Natural Language Text

tolBasis

Fundamental Definitions and Utilities of the Time Oriented Language (TOL)

tolerance

Statistical Tolerance Intervals and Regions

tomatocdf

tomatoprobe

Probe sequence data for microarrays of type tomato

tonymisc

Functions for Econometrics Output

toolmaRk

Tests for Same-Source of Toolmarks

tools4uplift

Tools for Uplift Modeling

ToolsForCoDa

Multivariate Tools for Compositional Data Analysis

TooManyCellsR

An R Wrapper for 'TooManyCells'

toOrdinal

Cardinal to Ordinal Number & Date Conversion

ToPASeq

Topology-based pathway analysis of RNA-seq data

topdownr

Investigation of Fragmentation Conditions in Top-Down Proteomics

topdownrdata

Example Files for the topdownr R Package

topGO

Enrichment Analysis for Gene Ontology

topicmodels

Topic Models

TopicScore

The Topic SCORE Algorithm to Fit Topic Models

TopKLists

Inference, Aggregation and Visualization for Top-K Ranked Lists

topmodel

Implementation of the Hydrological Model TOPMODEL in R

topologyGSA

Gene Set Analysis Exploiting Pathway Topology

topsis

TOPSIS method for multiple-criteria decision making (MCDM)

tor

Import Multiple Files From a Single Directory at Once

tosca

Tools for Statistical Content Analysis

tosls

Instrumental Variables Two Stage Least Squares estimation

TOSTER

Two One-Sided Tests (TOST) Equivalence Testing

totalcensus

Extract Decennial Census and American Community Survey Data

TotalCopheneticIndex

An R Package to Quantify Tree Balance

touch

Tools of Utilization and Cost in Healthcare

touchard

Touchard Model and Regression

tourr

Implement Tour Methods in R Code

tourrGui

A Tour GUI using gWidgets

toxboot

Bootstrap Methods for 'ToxCast' High Throughput Screening Data

toxEval

Exploring Biological Relevance of Environmental Chemistry Observations

ToxLim

Incorporating Ecological Data and Associated Uncertainty in Bioaccumulation Modeling

toxplot

Batch Processing, Modeling and Visualizing the Dose-Response of High-Throughput Screening Bioassay

toxtestD

Experimental design for binary toxicity tests

TP.idm

Estimation of Transition Probabilities for the Illness-Death Model

TPAM

tpAUC

Estimation and Inference of Two-Way pAUC, pAUC and pODC

TPD

Methods for Measuring Functional Diversity Based on Trait Probability Density

tpe

Tree preserving embedding

TPEA

A Novel Topology-Based Pathway Enrichment Analysis Approach

TPES

Tumor Purity Estimation using SNVs

TPMplt

Tool-Kit for Dynamic Materials Model and Thermal Processing Maps

TPmsm

Estimation of Transition Probabilities in Multistate Models

TPP

Analyze thermal proteome profiling (TPP) experiments

tpr

Temporal Process Regression

TR8

A Tool for Downloading Functional Traits Data for Plant Species

tracer

Slick Call Stacks

tracerer

Tracer from R

tracheideR

Standardize Tracheidograms

track

Store Objects on Disk Automatically

trackdem

Particle Tracking and Demography

trackeR

Infrastructure for Running, Cycling and Swimming Data from GPS-Enabled Tracking Devices

trackeRapp

Interface for the Analysis of Running, Cycling and Swimming Data from GPS-Enabled Tracking Devices

trackObjs

Track Objects (last release - package name changed to 'track')

trackr

Semantic Annotation and Discoverability System for R-Based Artifacts

TrackReconstruction

Reconstruct animal tracks from magnetometer, accelerometer, depth and optional speed data.

tracktables

Build IGV tracks and HTML reports

trackViewer

A R/Bioconductor package for drawing elegant interactive tracks or lollipop plot to facilitate integrated analysis of multi-omics data

tractor.base

Read, Manipulate and Visualise Magnetic Resonance Images

trade

Tools for Trade Practitioners

TRADER

Tree Ring Analysis of Disturbance Events in R

tradestatistics

Open Trade Statistics API Wrapper and Utility Program

Trading

Trades, Curves, Rating Tables, Add-on Tables, CSAs

TrafficBDE

Traffic Status Prediction in Urban Places using Neural Network Models

trafo

Estimation, Comparison and Selection of Transformations

traitdataform

Formatting and Harmonizing Ecological Trait-Data

traitr

An interface for creating GUIs modeled in part after traits UI module for python.

traits

Species Trait Data from Around the Web

Traitspace

A Predictive Model for Trait Based Community Assembly of Plant Species

traj

Trajectory Analysis

TrajDataMining

Trajectories Data Mining

trajectories

Classes and Methods for Trajectory Data

trajr

Animal Trajectory Analysis

tram

Transformation Models

TraMineR

Trajectory Miner: a Toolbox for Exploring and Rendering Sequences

TraMineRextras

TraMineR Extension

TRAMPR

'TRFLP' Analysis and Matching Package for R

transcribeR

Automated Transcription of Audio Files Through the HP IDOL API

transcriptogramer

Transcriptional analysis based on transcriptograms

transcriptR

An Integrative Tool for ChIP- And RNA-Seq Based Primary Transcripts Detection and Quantification

TransferEntropy

The Transfer Entropy Package

transformr

Polygon and Path Transformations

translate

Bindings for the Google Translate API v2

translateR

Bindings for the Google and Microsoft Translation APIs

translateSPSS2R

Toolset for Translating SPSS-Syntax to R-Code

translation.ko

R Manuals Literally Translated in Korean

tRanslatome

Comparison between multiple levels of gene expression

transmission

Continuous time infectious disease models on individual data.

TransModel

Fit Linear Transformation Models for Right Censored Data

transnet

Conducts transmission modeling on a bayesian network.

TransP

Implementation of Transportation Problem Algorithms

transport

Computation of Optimal Transport Plans and Wasserstein Distances

tranSurv

Estimating a Survival Distribution in the Presence of Dependent Left Truncation and Right Censoring

TransView

Read density map construction and accession. Visualization of ChIPSeq and RNASeq data sets

trapezoid

The Trapezoidal Distribution

traseR

GWAS trait-associated SNP enrichment analyses in genomic intervals

trawl

Estimation and Simulation of Trawl Processes

TRD

Transmission Ratio Distortion

TreatmentSelection

Evaluate Treatment Selection Biomarkers

treatSens

Sensitivity Analysis for Causal Inference

tree

Classification and Regression Trees

tree.bins

Recategorization of Factor Variables by Decision Tree Leaves

treebase

Discovery, Access and Manipulation of 'TreeBASE' Phylogenies

TreeBUGS

Hierarchical Multinomial Processing Tree Modeling

treeclim

Numerical Calibration of Proxy-Climate Relationships

treeClust

Cluster Distances Through Trees

treecm

Centre of Mass Assessment and Consolidation of Trees

treeDA

Tree-Based Discriminant Analysis

treedater

Fast Molecular Clock Dating of Phylogenetic Trees with Rate Variation

TreeDep

Air Pollution Removal by Dry Deposition on Trees

treeHFM

Hidden Factor Graph Models

treeio

Base Classes and Functions for Phylogenetic Tree Input and Output

treelet

An Adaptive Multi-Scale Basis for High-Dimensional, Sparse and Unordered Data

TreeLS

Terrestrial Point Cloud Processing of Forest Data

treeman

Phylogenetic Tree Manipulation Class and Methods

treemap

Treemap Visualization

treemapify

Draw Treemaps in 'ggplot2'

TreePar

Estimating birth and death rates based on phylogenies

treeperm

Exact and Asymptotic K Sample Permutation Test

treeplyr

'dplyr' Functionality for Matched Tree and Data Objects

treescape

Statistical Exploration of Landscapes of Phylogenetic Trees

TreeSearch

Phylogenetic Tree Search Using Custom Optimality Criteria

TreeSim

Simulating Phylogenetic Trees

TreeSimGM

Simulating Phylogenetic Trees under General Bellman Harris and Lineage Shift Model

treespace

Statistical Exploration of Landscapes of Phylogenetic Trees

treestartr

Generate Starting Trees for Combined Molecular, Morphological and Stratigraphic Data

treethresh

Methods for Tree-Based Local Adaptive Thresholding

trekfont

Star Trek Fonts Collection

trelliscope

Create and Navigate Large Multi-Panel Visual Displays

trelliscopejs

Create Interactive Trelliscope Displays

trelloR

R API for Trello

trena

Fit transcriptional regulatory networks using gene expression, priors, machine learning

trend

Non-Parametric Trend Tests and Change-Point Detection

trendchange

Innovative Trend Analysis and Time-Series Change Point Analysis

TrendInTrend

Odds Ratio Estimation and Power Calculation for the Trend in Trend Model

trendsegmentR

Linear Trend Segmentation and Point Anomaly Detection

Trendy

Breakpoint analysis of time-course expression data

trendyy

A Tidy Wrapper Around 'gtrendsR'

TRES

Tensor Regression with Envelope Structure and Three Generic Envelope Estimation Approaches

trex

Truncated exact test for two-stage case-control design for studying rare genetic variants

TriadSim

Simulating Triad Genomewide Genotypes

trialr

Clinical Trial Designs in 'rstan'

TrialSize

R functions in Chapter 3,4,6,7,9,10,11,12,14,15

TRIANG

Symmetric discrete triangular distributions

TRIANGG

General discrete triangular distribution

triangle

Provides the Standard Distribution Functions for the Triangle Distribution

triangulation

Determine Position of Observer

trib

Analysing and Visualizing Tribology Measurements

tribe

Play with the Tribe of Attributes

tricolore

A Flexible Color Scale for Ternary Compositions

triebeard

'Radix' Trees in 'Rcpp'

trifield

Some basic facilities for ternary fields and plots

triform

Triform finds enriched regions (peaks) in transcription factor ChIP-sequencing data

trigger

Transcriptional Regulatory Inference from Genetics of Gene ExpRession

trigpoints

Data Set of Trig Points in Great Britain in British National Grid Coordinates

TriMatch

Propensity Score Matching of Non-Binary Treatments

trimcluster

Cluster Analysis with Trimming

trimr

An Implementation of Common Response Time Trimming Methods

trimTrees

Trimmed opinion pools of trees in a random forest

trinROC

Statistical Tests for Assessing Trinormal ROC Data

trio

Testing of SNPs and SNP Interactions in Case-Parent Trio Studies

trio

Testing of SNPs and SNP Interactions in Case-Parent Trio Studies

trioGxE

A data smoothing approach to explore and test gene-environment interaction in case-parent trio data

TrioSGL

Trio Model with a Combination of Lasso and Group Lasso Regularization

trip

Tools for the Analysis of Animal Track Data

tripack

Triangulation of Irregularly Spaced Data

tripEstimation

Metropolis Sampler and Supporting Functions for Estimating Animal Movement from Archival Tags and Satellite Fixes

TripleR

Social Relation Model (SRM) Analyses for Single or Multiple Groups

triplex

Search and visualize intramolecular triplex-forming sequences in DNA

triversity

Diversity Measures on Tripartite Graphs

tRNAscanImport

Imports a tRNAscan-SE result file as GRanges object

TROM

Transcriptome Overlap Measure

TRONCO

TRONCO, an R package for TRanslational ONCOlogy

tropAlgebra

Tropical Algebraic Functions

TropFishR

Tropical Fisheries Analysis

tRophicPosition

Bayesian Trophic Position Calculation with Stable Isotopes

tropicalSparse

Sparse Tropical Algebra

tropr

TV Tropes Statistics

trotter

Pseudo-Vectors Containing All Permutations, Combinations and Subsets of Objects Taken from a Vector.

trread

Read, Validate, and Analyze Files in the General Transit Feed Specification

TRSbook

Functions and Datasets to Accompany the Book "The R Software: Fundamentals of Programming and Statistical Analysis"

trtf

Transformation Trees and Forests

truelies

Bayesian Methods to Estimate the Proportion of Liars in Coin Flip Experiments

trueskill

Implementation the TrueSkill algorithm in R

TruncatedNormal

Truncated Multivariate Normal and Student Distributions

truncdist

Truncated Random Variables

truncgof

GoF tests allowing for left truncated data

truncnorm

Truncated Normal Distribution

truncreg

Truncated Gaussian Regression Models

truncSP

Semi-parametric estimators of truncated regression models

trust

Trust Region Optimization

trustOptim

Trust Region Optimization for Nonlinear Functions with Sparse Hessians

tryCatchLog

Advanced 'tryCatch()' and 'try()' Functions

TSA

Time Series Analysis

TSAgg

Time series Aggregation

tsallisqexp

Tsallis q-Exp Distribution

tsbox

Class-Agnostic Time Series

tsbridge

Calculate normalising constants for Bayesian time series models.

tsBSS

Blind Source Separation and Supervised Dimension Reduction for Time Series

tsbugs

Create Time Series BUGS Models

TSCAN

TSCAN: Tools for Single-Cell ANalysis

TSclust

Time Series Clustering Utilities

TScompare

'TSdbi' Database Comparison

tscount

Analysis of Count Time Series

TSCS

Time Series Cointegrated System

TSdata

'TSdbi' Illustration

tsdb

Terribly-Simple Data Base for Time Series

TSdbi

Time Series Database Interface

tsdecomp

Decomposition of Time Series Data

tsdf

Two-/Three-Stage Designs for Phase 1&2 Clinical Trials

TSDFGS

Training Set Determination for Genomic Selection

tsdisagg2

Time Series Disaggregation

TSdist

Distance Measures for Time Series Data

TSDT

Treatment-Specific Subgroup Detection Tool

tsDyn

Nonlinear Time Series Models with Regime Switching

TSE

Total Survey Error

TSEN

Two-dimensional peak sentinel tool for GC x GC-HRTOFMS

tsensembler

Dynamic Ensembles for Time Series Forecasting

TSEntropies

Time Series Entropies

tseries

Time Series Analysis and Computational Finance

tseriesChaos

Analysis of Nonlinear Time Series

tseriesEntropy

Entropy Based Analysis and Tests for Time Series

TSeriesMMA

Multiscale Multifractal Analysis of Time Series Data

TSEtools

Download and Manage Data from Tehran Stock Exchange

TSF

Two Stage Forecasting (TSF) for Long Memory Time Series in Presence of Structural Break

tsfa

Time Series Factor Analysis

TSfame

'TSdbi' Extensions for Fame

tsfeatures

Time Series Feature Extraction

tsfknn

Time Series Forecasting Using Nearest Neighbors

TSgetSymbol

TSdbi extension to connect with getSymbols

TSGSIS

Two Stage-Grouped Sure Independence Screening

tsgui

Gui for Simulating Time Series

TShistQuote

TSdbi extensions for get.hist.quote

TSHRC

Two Stage Hazard Rate Comparison

tsibble

Tidy Temporal Data Frames and Tools

tsibbledata

Diverse Datasets for 'tsibble'

tsintermittent

Intermittent Time Series Forecasting

tsiR

An Implementation of the TSIR Model

TSjson

TSdbi extension for importing time series from web sources via JSON

tslars

Least angle regression for time series analysis

TSMCP

Fast Two Stage Multiple Change Point Detection

TSMining

Mining Univariate and Multivariate Motifs in Time-Series Data

TSmisc

'TSdbi' Extensions to Wrap Miscellaneous Data Sources

TSMN

Truncated Scale Mixtures of Normal Distributions

tsModel

Time Series Modeling for Air Pollution and Health

tsmp

Time Series with Matrix Profile

TSMySQL

'TSdbi' Extensions for 'MySQL'

tsna

Tools for Temporal Social Network Analysis

tsne

T-distributed Stochastic Neighbor Embedding for R (t-SNE)

TSodbc

'TSdbi' Extensions for ODBC

tsoutliers

Detection of Outliers in Time Series

TSP

Traveling Salesperson Problem (TSP)

TSpadi

TSdbi extensions for PADI Time Series Server

tspair

Top Scoring Pairs for Microarray Classification

TSPC

Prediction using time-course gene expression

Tsphere

Transposable Sphering for Large-Scale Inference with Correlated Data.

tsPI

Improved Prediction Intervals for ARIMA Processes and Structural Time Series

tspmeta

Instance Feature Calculation and Evolutionary Instance Generation for the Traveling Salesman Problem

TSPostgreSQL

'TSdbi' Extensions for 'PostgreSQL'

TSPred

Functions for Benchmarking Time Series Prediction

tsqn

Applications of the Qn Estimator to Time Series (Univariate and Multivariate)

TSRchitect

Promoter identification from large-scale TSS profiling data

TSrepr

Time Series Representations

TSS.RESTREND

Time Series Segmentation of Residual Trends

TSsdmx

'TSdbi' Extension to Connect with 'SDMX'

tsSelect

Execution of Time Series Models

TSSi

Transcription Start Site Identification

TSsql

Generic SQL Helper Functions for 'TSdbi' SQL Plugins

TSSQLite

'TSdbi' Extensions for 'SQLite'

TSSS

Time Series Analysis with State Space Model

TSstudio

Functions for Time Series Analysis and Forecasting

tstools

A Time Series Toolbox for Official Statistics

TSTr

Ternary Search Tree for Auto-Completion and Spell Checking

TSTutorial

Fitting and Predict Time Series Interactive Laboratory

tsutils

Time Series Exploration, Modelling and Forecasting

TSVC

Tree-Structured Modelling of Varying Coefficients

tsvr

Timescale-Specific Variance Ratio for Use in Community Ecology

tswge

Applied Time Series Analysis

TSxls

TSdbi extension to connect to spreadsheets

tsxtreme

Bayesian Modelling of Extremal Dependence in Time Series

TSzip

TSdbi extension to connect to zip files

TTAinterfaceTrendAnalysis

Temporal Trend Analysis Graphical Interface

ttbbeer

US Beer Statistics from TTB

TTCA

Transcript Time Course Analysis

ttestshiny

Ttest Shiny

tth

TeX to HTML/MathML Translators tth/ttm

ttime

Translate Neurodevelopmental Event Timing Across Species

TTMap

Two-Tier Mapper: a clustering tool based on topological data analysis

TTR

Technical Trading Rules

ttrTests

Standard Backtests for Technical Trading Rules in Financial Data

TTS

Master Curve Estimates Corresponding to Time-Temperature Superposition

ttScreening

Genome-Wide DNA Methylation Sites Screening by Use of Training and Testing Samples

ttTensor

Tensor-Train Decomposition

tttplot

Time to Target Plot

ttutils

Utility functions

ttwa

Travel To Work Area.

tuber

Client for the YouTube API

tubern

R Client for the YouTube Analytics and Reporting API

tuckerR.mmgg

Three-Mode Principal Components Analysis

tufte

Tufte's Styles for R Markdown Documents

tufterhandout

Tufte-style html document format for rmarkdown

TukeyC

Conventional Tukey Test

TukeyRegion

Tukey Region and Median

tukeytrend

Tukeys Trend Test via Multiple Marginal Models

TULIP

A Toolbox for Linear Discriminant Analysis with Penalties

tumblR

Access to Tumblr v2 API

tumgr

Tumor Growth Rate Analysis

TunePareto

Multi-Objective Parameter Tuning for Classifiers

tuneR

Analysis of Music and Speech

tuneRanger

Tune Random Forest of the 'ranger' Package

tuple

Find every match, or orphan, duplicate, triplicate, or other replicated values

turboEM

A Suite of Convergence Acceleration Schemes for EM, MM and Other Fixed-Point Algorithms

TurboNorm

A fast scatterplot smoother suitable for microarray normalization

turfR

TURF Analysis for R

turner

Turn vectors and lists of vectors into indexed structures

TurtleGraphics

Turtle Graphics

Tushare

Interface to 'Tushare Pro' API

tutorial

Convert R Markdown Files to DataCamp Light HTML Files

tuts

Time Uncertain Time Series Analysis

TUWmodel

Lumped/Semi-Distributed Hydrological Model for Education Purposes

tvd

Total Variation Denoising

tvm

Time Value of Money Functions

tvR

Total Variation Regularization

tvReg

Time-Varying Coefficient Linear Regression for Single and Multi-Equations

TVsMiss

Variable Selection for Missing Data

TVTB

TVTB: The VCF Tool Box

twang

Toolkit for Weighting and Analysis of Nonequivalent Groups

tweeDEseq

RNA-seq data analysis using the Poisson-Tweedie family of distributions

tweeDEseqCountData

RNA-seq count data employed in the vignette of the tweeDEseq package

tweedie

Evaluation of Tweedie Exponential Family Models

tweenr

Interpolate Data for Smooth Animations

tweet2r

Twitter Collector for R and Export to 'SQLite', 'postGIS' and 'GIS' Format

twfy

Drive the API for TheyWorkForYou

twiddler

Interactive manipulation of R expressions

twilight

Estimation of local false discovery rate

twilio

An Interface to the Twilio API for R

twitteR

R Based Twitter Client

TWIX

Trees WIth eXtra splits

two.stage.boot

Two-stage cluster sample bootstrap algorithm

TwoCop

Nonparametric test of equality between two copulas

twoddpcr

Classify 2-d Droplet Digital PCR (ddPCR) data and quantify the number of starting molecules

TwoPhaseInd

Estimate Gene-Treatment Interaction Exploiting Randomization

TwoRegression

Process Data from Wearable Research Devices Using Two-Regression Algorithms

twosamples

Fast Permutation Based Two Sample Tests

TwoSampleTest.HD

A Two-Sample Test for the Equality of Distributions for High-Dimensional Data

twoStageGwasPower

Compute thresholds and power for two-stage gwas

twostageTE

Two-Stage Threshold Estimation