Packages

A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

s2

Google's S2 Library for Geometry on the Sphere

s20x

Functions for University of Auckland Course STATS 201/208 Data Analysis

s2dverification

Set of Common Tools for Forecast Verification

S2sls

Spatial Two Stage Least Squares Estimation

s3x

Enhanced S3 Programming

s4vd

Biclustering via Sparse Singular Value Decomposition Incorporating Stability Selection

S4Vectors

S4 implementation of vector-like and list-like objects

saasCNV

Somatic Copy Number Alteration Analysis Using Sequencing and SNP Array Data

Sabermetrics

Sabermetrics Functions for Baseball Analytics

sabre

Spatial Association Between Regionalizations

sabreR

Multivariate Generalized Linear Mixed Models

sac

Semiparametric Analysis of Changepoint

saccades

Detection of Fixations in Eye-Tracking Data

SACCR

SA Counterparty Credit Risk under Basel III

SACOBRA

Self-Adjusting COBRA

SADEG

Stability Analysis in Differentially Expressed Genes

SADISA

Species Abundance Distributions with Independent-Species Assumption

sadists

Some Additional Distributions

sads

Maximum Likelihood Models for Species Abundance Distributions

sae

Small Area Estimation

saemix

Stochastic Approximation Expectation Maximization (SAEM) Algorithm

SAENET

A Stacked Autoencoder Implementation with Interface to 'neuralnet'

saeRobust

Robust Small Area Estimation

saery

Small Area Estimation for Rao and Yu Model

saeSim

Simulation Tools for Small Area Estimation

SAFD

Statistical Analysis of Fuzzy Data

safe

Significance Analysis of Function and Expression

SafeBayes

Generalized and Safe-Bayesian Ridge and Lasso Regression

safeBinaryRegression

Safe Binary Regression

SafeQuant

A Toolbox for the Analysis of Proteomics Data

safer

Encrypt and Decrypt Strings, R Objects and Files

safetyGraphics

Create Interactive Graphics Related to Clinical Trial Safety

safi

Sensitivity Analysis for Functional Input

SAGA

Software for the Analysis of Genetic Architecture

sagenhaft

Collection of functions for reading and comparing SAGE libraries

SAGMM

Clustering via Stochastic Approximation and Gaussian Mixture Models

SAGx

Statistical Analysis of the GeneChip

sAIC

Akaike Information Criterion for Sparse Estimation

SALES

Elastic Net and (Adaptive) Lasso Penalized Sparse Asymmetric Least Squares (SALES) and Coupled Sparse Asymmetric Least Squares (COSALES) using Coordinate Descent and Proximal Gradient Algorithms

salesforcer

An Implementation of 'Salesforce' APIs Using Tidy Principles

SALTSampler

Efficient Sampling on the Simplex

SAM

Sparse Additive Modelling

sambia

A Collection of Techniques Correcting for Sample Selection Bias

SAMCpack

Stochastic Approximation Monte Carlo (SAMC) Sampler and Methods

samExploreR

samExploreR package: high-performance read summarisation to count vectors with avaliability of sequencing depth reduction simulation

SAMM

Some Algorithms for Mixed Models

samon

Sensitivity Analysis for Missing Data

Sample.Size

Sample size calculation

sampleClassifier

Sample Classifier

sampleClassifierData

Pre-processed data for use with the sampleClassifier package

sampler

Sample Design, Drawing & Data Analysis Using Data Frames

SamplerCompare

A Framework for Comparing the Performance of MCMC Samplers

sampleSelection

Sample Selection Models

samplesize

Sample Size Calculation for Various t-Tests and Wilcoxon-Test

SampleSize4ClinicalTrials

Sample Size Calculation for Mean and Proportion Comparisons in Phase 3 Clinical Trials

samplesize4surveys

Sample Size Calculations for Complex Surveys

samplesizeCMH

Power and Sample Size Calculation for the Cochran-Mantel-Haenszel Test

samplesizelogisticcasecontrol

Sample Size Calculations for Case-Control Studies

SampleSizeMeans

Sample size calculations for normal means

SampleSizeProportions

Calculating sample size requirements when estimating the difference between two binomial proportions

sampling

Survey Sampling

samplingbook

Survey Sampling Procedures

samplingDataCRT

Sampling Data Within Different Study Designs for Cluster Randomized Trials

samplingEstimates

Sampling Estimates

SamplingStrata

Optimal Stratification of Sampling Frames for Multipurpose Sampling Surveys

samplingVarEst

Sampling Variance Estimation

sampSurf

Sampling Surface Simulation for Areal Sampling Methods

samr

SAM: Significance Analysis of Microarrays

SamSPECTRAL

Identifies cell population in flow cytometry data.

SAMUR

Stochastic Augmentation of Matched Data Using Restriction Methods

SAMURAI

Sensitivity Analysis of a Meta-analysis with Unpublished but Registered Analytical Investigations

sand

Statistical Analysis of Network Data with R

sandwich

Robust Covariance Matrix Estimators

SanFranBeachWater

Downloads and Tidies the San Francisco Public Utilities Commission Beach Water Quality Monitoring Program Data

sangerseqR

Tools for Sanger Sequencing Data in R

sanitizers

C/C++ source code to trigger Address and Undefined Behaviour Sanitizers

sankey

Illustrate the Flow of Information or Material

sanon

Stratified Analysis with Nonparametric Covariable Adjustment

SANTA

Spatial Analysis of Network Associations

santaR

Short Asynchronous Time-Series Analysis

SanzCircos

Functions for Creating 'Circos' Files

saotd

Sentiment Analysis of Twitter Data

sapa

Spectral Analysis for Physical Applications

sapFinder

A package for variant peptides detection and visualization in shotgun proteomics.

sapfluxnetr

Working with 'Sapfluxnet' Project Data

SAPP

Statistical Analysis of Point Processes

saps

Significance Analysis of Prognostic Signatures

saps

Significance Analysis of Prognostic Signatures

saqgetr

Import Air Quality Monitoring Data in a Fast and Easy Way

SAR

Smart Adaptive Recommendations

sarima

Simulation and Prediction with Seasonal ARIMA Models

SARP.compo

Network-Based Interpretation of Changes in Compositional Data

SARP.moodle

XML Output Functions for Easy Creation of Moodle Questions

sars

Fit and Compare Species-Area Relationship Models Using Multimodel Inference

sas7bdat

SAS Database Reader (experimental)

SAScii

Import ASCII files directly into R using only a SAS input script

sasMap

Static 'SAS' Code Analysis

SASmarkdown

'SAS' Markdown

SASmixed

Data sets from "SAS System for Mixed Models"

SASPECT

Significant AnalysiS of PEptide CounTs.

sass

Syntactically Awesome Style Sheets (Sass) for R

SASxport

Read and Write 'SAS' 'XPORT' Files

satellite

Handling and Manipulating Remote Sensing Data

satscanMapper

'SaTScan' (TM) Results Mapper

saturnin

Spanning Trees Used for Network Inference

saureuscdf

saureuscdf

saureusprobe

Probe sequence data for microarrays of type saureus

SAutomata

Inference and Learning in Stochastic Automata

SAVE

Bayesian Emulation, Calibration and Validation of Computer Models

SAVER

Single-Cell RNA-Seq Gene Expression Recovery

saves

Fast load variables

savR

Parse and analyze Illumina SAV files

saws

Small-Sample Adjustments for Wald tests Using Sandwich Estimators

sazedR

Parameter-Free Domain-Agnostic Season Length Detection in Time Series

sbart

Sequential BART for Imputation of Missing Covariates

sBF

Smooth Backfitting

sbgcop

Semiparametric Bayesian Gaussian Copula Estimation and Imputation

sbgr

R Client for Seven Bridges Genomics API

sBIC

Computing the Singular BIC for Multiple Models

sbioPN

sbioPN: Simulation of deterministic and stochastic spatial biochemical reaction networks using Petri Nets

sbl

Sparse Bayesian Learning for QTL Mapping and Genome-Wide Association Studies

SBMLR

SBML-R Interface and Analysis Tools

sbmSDP

Semidefinite Programming for Fitting Block Models of Equal Block Sizes

sboost

Machine Learning with AdaBoost on Decision Stumps

sbpiper

Data Analysis Functions for 'SBpipe' Package

SBRect

Detecting structural breaks using rectangle covering (non-parametric method).

sbrl

Scalable Bayesian Rule Lists Model

SBSA

Simplified Bayesian Sensitivity Analysis

sbscrapeR

Social Blade Scraper

SBSDiff

Satorra-Bentler Scaled Chi-Squared Difference Test

sbtools

USGS ScienceBase Tools

SC3

Single-Cell Consensus Clustering

sca

Simple Component Analysis

scagnostics

Compute scagnostics - scatterplot diagnostics

Scale

Likert Type Questionnaire Item Analysis

Scale4C

Scale4C: an R/Bioconductor package for scale-space transformation of 4C-seq data

scaleboot

Approximately Unbiased P-Values via Multiscale Bootstrap

Scalelink

Create Scale Linkage Scores

scales

Scale Functions for Visualization

scalpel

Processes Calcium Imaging Data

scalreg

Scaled Sparse Linear Regression

scam

Shape Constrained Additive Models

scan

Single-Case Data Analyses for Single and Multiple AB Designs

SCAN.UPC

Single-channel array normalization (SCAN) and Universal exPression Codes (UPC)

scanstatistics

Space-Time Anomaly Detection using Scan Statistics

scape

Statistical Catch-at-Age Plotting Environment

scapeMCMC

MCMC Diagnostic Plots

scar

Shape-Constrained Additive Regression: a Maximum Likelihood Approach

scaRabee

Optimization Toolkit for Pharmacokinetic-Pharmacodynamic Models

SCAT

Summary Based Conditional Association Test

scater

Single-Cell Analysis Toolkit for Gene Expression Data in R

scatr

Create Scatter Plots with Marginal Density or Box Plots

scatterD3

D3 JavaScript Scatterplot from R

scatterpie

Scatter Pie Plot

scatterplot3d

3D Scatter Plot

SCBiclust

Identifies Mean, Variance, and Hierarchically Clustered Biclusters

scBio

Single Cell Genomics for Enhancing Cell Composition Inference from Bulk Genomics Data

SCBmeanfd

Simultaneous Confidence Bands for the Mean of Functional Data

scbursts

Single Channel Bursts Analysis

SCCI

Stochastic Complexity-Based Conditional Independence Test for Discrete Data

scclust

Size-Constrained Clustering

SCCS

The Self-Controlled Case Series Method

scDD

Mixture modeling of single-cell RNA-seq data to identify genes with differential distributions

scde

Single Cell Differential Expression

scdensity

Shape-Constrained Kernel Density Estimation

scdhlm

Estimating Hierarchical Linear Models for Single-Case Designs

scenario

Construct Reduced Trees with Predefined Nodal Structures

SCEPtER

Stellar CharactEristics Pisa Estimation gRid

SCEPtERextras

Additional grids for SCEPtER

scFeatureFilter

A correlation-based method for quality filtering of single-cell RNAseq data

scfind

A search tool for single cell RNA-seq data by gene lists

SCGLR

Supervised Component Generalized Linear Regression

scgwr

Scalable Geographically Weighted Regression

SchemaOnRead

Automated Schema on Read

schoenberg

Tools for 12-Tone Musical Composition

scholar

Analyse Citation Data from Google Scholar

schoolmath

Functions and datasets for math used in school

schoRsch

Tools for Analyzing Factorial Experiments

schumaker

Schumaker Shape-Preserving Spline

schwartz97

A package on the Schwartz two-factor commodity model

SCI

Standardized Climate Indices Such as SPI, SRI or SPEI

scico

Colour Palettes Based on the Scientific Colour-Maps

scidb

An R Interface to SciDB

SciencesPo

A Tool Set for Analyzing Political Behavior Data

scifigure

Visualize 'Reproducibility' and 'Replicability' in a Comparison of Scientific Studies

SCINA

A Semi-Supervised Category Identification and Assignment Tool

scio

Sparse Column-wise Inverse Operator

sciplot

Scientific Graphing Functions for Factorial Designs

ScISI

In Silico Interactome

SciViews

SciViews - Main package

SCLCBam

Sequence data from chromosome 4 of a small-cell lung tumor

sclero

Measure Growth Patterns and Align Sampling Spots in Photographs

SCMA

Single-Case Meta-Analysis

scmamp

Statistical Comparison of Multiple Algorithms in Multiple Problems

scmap

A tool for unsupervised projection of single cell RNA-seq data

scmeth

Functions to conduct quality control analysis in methylation data

scModels

Fitting Discrete Distribution Models to Count Data

SCnorm

Normalization of single cell RNA-seq data

scone

Single Cell Overview of Normalized Expression data

Sconify

A toolkit for performing KNN-based statistics for flow and mass cytometry data

scoper

Spectral Clustering-Based Method for Identifying B Cell Clones

scopr

Read Ethoscope Data

score

A Package to Score Behavioral Questionnaires

scorecard

Credit Risk Scorecard

scorecardModelUtils

Credit Scorecard Modelling Utils

ScoreGGUM

Score Persons Using the Generalized Graded Unfolding Model

scoreInvHap

Get inversion status in predefined regions

ScorePlus

Implementation of SCORE, SCORE+ and Mixed-SCORE

scorer

Quickly Score Models in Data Science and Machine Learning

SCORER2

SCORER 2.0: an algorithm for distinguishing parallel dimeric and trimeric coiled-coil sequences

scoring

Proper Scoring Rules

scoringRules

Scoring Rules for Parametric and Simulated Distribution Forecasts

SCORPIUS

Inferring Developmental Chronologies from Single-Cell RNA Sequencing Data

ScottKnott

The ScottKnott Clustering Algorithm

ScottKnottESD

The Scott-Knott Effect Size Difference (ESD) Test

scout

Implements the Scout Method for Covariance-Regularized Regression

scPDSI

Calculation of the Conventional and Self-Calibrating Palmer Drought Severity Index

SCperf

Functions for Planning and Managing Inventories in a Supply Chain

scphaser

Phase Variants Within Genes Using Allele Counts

scPipe

pipeline for single cell RNA-seq data analysis

scpm

An R Package for Spatial Smoothing

SCPME

Shrinking Characteristics of Precision Matrix Estimators

SCRABBLE

Impute Single-Cell RNA-Seq Data Method

ScrabbleScore

Calculates Scrabble score for strings

scraEP

Scrape European Parliament Careers

scran

Methods for Single-Cell RNA-Seq Data Analysis

scrapeR

Tools for Scraping Data from HTML and XML Documents

ScreenClean

Screen and clean variable selection procedures

scrime

Analysis of High-Dimensional Categorical Data Such as SNP Data

scriptests

Transcript-Based Unit Tests that are Easy to Create and Maintain

scriptexec

Execute Native Scripts

scriptName

Determine a Script's Filename from Within the Script Itself

scriptuRs

Complete Text of the LDS Scriptures

scrm

Simulating the Evolution of Biological Sequences

scRNAseq

A Collection of Public Single-Cell RNA-Seq Datasets

scRNAtools

Single Cell RNA Sequencing Data Analysis Tools

scrobbler

Download 'Scrobbles' from 'Last.fm'

SCRSELECT

Performs Bayesian Variable Selection on the Covariates in a Semi-Competing Risks Model

SCRT

Single-Case Randomization Tests

scrubr

Clean Biological Occurrence Records

scrypt

scrypt key derivation functions for R

scs

Splitting Conic Solver

scsR

SiRNA correction for seed mediated off-target effect

sctransform

Variance Stabilizing Transformations for Single Cell UMI Data

scuba

Diving Calculations and Decompression Models

sculpt3d

A simple toolbar GUI for brushing RGL plots

SCVA

Single-Case Visual Analysis

scvxclustr

Sparse Convex Clustering

sda

Shrinkage Discriminant Analysis and CAT Score Variable Selection

SDaA

Sampling: Design and Analysis

SDALGCP

Spatially Discrete Approximation to Log-Gaussian Cox Processes for Aggregated Disease Count Data

SDAMS

Differential Abundant Analysis for Metabolomics and Proteomics Data

sdat

Signal Detection via Adaptive Test

SDBP

Calculate the third-order accurate Unbiased P-values via Speedy double bootstrap method

sdcHierarchies

Create and (Interactively) Modify Nested Hierarchies

sdcMicro

Statistical Disclosure Control Methods for Anonymization of Data and Risk Estimation

sdcMicroGUI

Graphical User Interface for Package sdcMicro

sdcTable

Methods for Statistical Disclosure Control in Tabular Data

sdcTarget

Statistical Disclosure Control Substitution Matrix Calculator

SDD

Serial Dependence Diagrams

SDDA

Stepwise Diagonal Discriminant Analysis

SDDE

Shortcuts, Detours and Dead Ends (SDDE) Path Types in Genome Similarity Networks

sddpack

Semidiscrete Decomposition

sde

Simulation and Inference for Stochastic Differential Equations

sdef

Synthesizing List of Differentially Expressed Features

SDEFSR

Subgroup Discovery with Evolutionary Fuzzy Systems in R

SDisc

Integrated methodology for the identification of homogeneous subtypes in data

SDLfilter

Filtering Satellite-Derived Locations

sdm

Species Distribution Modelling

SDMPlay

Species Distribution Modelling Playground

sdmpredictors

Species Distribution Modelling Predictor Datasets

SDMTools

Species Distribution Modelling Tools: Tools for processing data associated with species distribution modelling exercises

SDMtune

Species Distribution Model Selection

sdmvspecies

Create Virtual Species for Species Distribution Modelling

sdnet

Soft-Discretization-Based Bayesian Network Inference

sdols

Summarizing Distributions of Latent Structures

sdPrior

Scale-Dependent Hyperpriors in Structured Additive Distributional Regression

sdprisk

Measures of Risk for the Compound Poisson Risk Process with Diffusion

sdpt3r

Semi-Definite Quadratic Linear Programming Solver

SDR

Subgroup Discovery Algorithms for R

SDraw

Spatially Balanced Samples of Spatial Objects

sdStaf

Species Distribution and Stability Future Models

SDT

Self-Determination Theory Measures

sdtoolkit

Scenario Discovery Tools to Support Robust Decision Making

sdwd

Sparse Distance Weighted Discrimination

SE.IGE

Standard errors of estimated genetic parametes

SEA

Segregation Analysis

seaaroundus

Sea Around Us API Wrapper

seacarb

Seawater Carbonate Chemistry

sealasso

Standard Error Adjusted Adaptive Lasso

sealr

Sealing the R Objects Test and Assert Conditions

searchable

Tools for Custom Searches / Subsets / Slices of Named R Objects

searchConsoleR

Google Search Console R Client

searcher

Query Search Interfaces

SearchTrees

Spatial Search Trees

seas

Seasonal Analysis and Graphics, Especially for Climatology

SEAsic

Score Equity Assessment- summary index computation

season

Seasonal Analysis of Health Data

seasonal

R Interface to X-13-ARIMA-SEATS

seasonalview

Graphical User Interface for Seasonal Adjustment

seastests

Seasonality Tests

seawaveQ

U.S. Geological Survey seawaveQ model

SEchart

SEchart

SECP

Statistical Estimation of Cluster Parameters (SECP)

secr

Spatially Explicit Capture-Recapture

secrdesign

Sampling Design for Spatially Explicit Capture-Recapture

secret

Share Sensitive Information in R Packages

secrlinear

Spatially Explicit Capture-Recapture for Linear Habitats

secsse

Several Examined and Concealed States-Dependent Speciation and Extinction

secure

Sequential Co-Sparse Factor Regression

securitytxt

Identify and Parse Web Security Policies Files

see

Visualisation Toolbox for 'easystats' and Extra Geoms, Themes and Color Palettes for 'ggplot2'

seeclickfixr

Access Data from the SeeClickFix Web API

SeedCalc

Seed Germination and Seedling Growth Indexes

seedCCA

Seeded Canonical Correlation Analysis

seedwater

Models for Drying and Soaking Kinetics of Seeds

seedy

Simulation of Evolutionary and Epidemiological Dynamics

seeg

Statistics for Environmental Sciences, Engineering, and Geography

seem

Simulation of Ecological and Environmental Models

SEER2R

reading and writing SEER*STAT data files

SEERaBomb

SEER and Atomic Bomb Survivor Data Analysis Tools

SeerMapper

A Quick Way to Map U.S. Rates and Data of U. S. States, Counties, Census Tracts, or Seer Registries using 2000 and 2010 U. S. Census Boundaries

SeerMapper2010East

Supplemental U. S. 2010 Census Tract Boundaries for 23 Eastern States without Registries for 'SeerMapper'

SeerMapper2010Regs

Supplemental U. S. 2010 Census Tract Boundaries for 15 States with Seer Registries for 'SeerMapper'

SeerMapper2010West

Supplemental U.S. 2010 Census Tract Boundaries for 14 Western States without Seer Registries for 'SeerMapper'

SeerMapperEast

Supplemental U. S. 2000 Census Tract Boundaries for 23 Eastern States without Seer Registries

SeerMapperRegs

Supplemental U. S. 2000 Census Tract Boundary for 15 States with Seer Registries for 'SeerMapper'

SeerMapperWest

Supplemental U.S. 2000 Census Tract Boundaries for 14 Western States without Seer Registries for 'SeerMapper'

seewave

Sound Analysis and Synthesis

seg

Measuring Spatial Segregation

segclust2d

Bivariate Segmentation/Clustering Methods and Tools

SegCorr

Detecting Correlated Genomic Regions

segmag

Determine Event Boundaries in Event Segmentation Experiments

segmented

Regression Models with Break-Points / Change-Points Estimation

segmenTier

Similarity-Based Segmentation of Multidimensional Signals

Segmentor3IsBack

A Fast Segmentation Algorithm

segmentr

Segment Data With Maximum Likelihood

segmentSeq

Methods for identifying small RNA loci from high-throughput sequencing data

segMGarch

Multiple Change-Point Detection for High-Dimensional GARCH Processes

segregation

Entropy-Based Segregation Indices

SEHmodel

Spatial Exposure-Hazard Model for Exposure and Impact Assessment on Exposed Individuals

seismic

Predict Information Cascade by Self-Exciting Point Process

seismicRoll

Fast Rolling Functions for Seismology using 'Rcpp'

sejmRP

An Information About Deputies and Votings in Polish Diet from Seventh to Eighth Term of Office

Sejong

KoNLP static dictionaries and Sejong project resources.

SEL

Semiparametric elicitation

selac

Selection Models for Amino Acid and/or Codon Evolution

Select

Determines Species Probabilities Based on Functional Traits

selectapref

Analysis of Field and Laboratory Foraging

SelectBoost

A General Algorithm to Enhance the Performance of Variable Selection Methods in Correlated Datasets

selection

Correcting Biased Estimates Under Selection

selectiongain

A Tool for Calculation and Optimization of the Expected Gain from Multi-Stage Selection

selectiveInference

Tools for Post-Selection Inference

selectMeta

Estimation of Weight Functions in Meta Analysis

selectr

Translate CSS Selectors to XPath Expressions

selectspm

Select Point Pattern Models Based on Minimum Contrast, AIC and Goodness of Fit

SeleMix

Selective Editing via Mixture Models

seleniumPipes

R Client Implementing the W3C WebDriver Specification

SELEX

Functions for analyzing SELEX-seq data

SELF

A Structural Equation Embedded Likelihood Framework for Causal Discovery

selfea

Select Features Reliably with Cohen's Effect Sizes

SelvarMix

Regularization for Variable Selection in Model-Based Clustering and Discriminant Analysis

sem

Structural Equation Models

semantic.dashboard

Dashboard with Semantic UI Support for 'shiny'

Semblance

A Data-Driven Similarity Kernel on Probability Spaces

semdiag

Structural equation modeling diagnostics

SemDist

Information Accretion-based Function Predictor Evaluation

semdrw

'SEM Shiny'

semds

Structural Equation Multidimensional Scaling

semGOF

Goodness-of-fit indexes for structural equation models

semiArtificial

Generator of Semi-Artificial Data

SemiCompRisks

Hierarchical Models for Parametric and Semi-Parametric Analyses of Semi-Competing Risks Data

SEMID

Identifiability of Linear Structural Equation Models

SemiMarkov

Multi-States Semi-Markov Models

seminr

Domain-Specific Language for Building PLS Structural Equation Models

SemiPar

Semiparametic Regression

SemiParBIVProbit

Semiparametric Copula Regression Models

SemiParSampleSel

Semi-Parametric Sample Selection Modelling with Continuous or Discrete Response

semisup

Detecting SNPs with interactive effects on a quantitative trait

SemiSupervised

Safe Semi-Supervised Learning Tools

semisupKernelPCA

Kernel PCA projection, and semi-supervised variant.

SEMModComp

Model Comparisons for SEM

SemNetCleaner

An Automated Cleaning Tool for Semantic and Linguistic Data

SemNetDictionaries

Dictionaries for the 'SemNetCleaner' Package

semPlot

Path Diagrams and Visual Analysis of Various SEM Packages' Output

semPLS

Structural Equation Modeling Using Partial Least Squares

semPower

Power Analyses for SEM

SEMrushR

R Interface to Access the 'SEMrush' API

semsfa

Semiparametric Estimation of Stochastic Frontier Models

semTable

Structural Equation Modeling Tables

semTools

Useful Tools for Structural Equation Modeling

semtree

Recursive Partitioning for Structural Equation Models

semver

'Semantic Versioning V2.0.0' Parser

sendmailR

send email using R

sendplot

Tool for sending interactive plots with tool-tip content.

sensibo.sky

Access to 'Sensibo Sky' API V2 for Air Conditioners Remote Control

sensiPhy

Sensitivity Analysis for Comparative Methods

sensitivity

Global Sensitivity Analysis of Model Outputs

sensitivity2x2xk

Sensitivity Analysis for 2x2xk Tables in Observational Studies

sensitivityCalibration

A Calibrated Sensitivity Analysis for Matched Observational Studies

SensitivityCaseControl

Sensitivity Analysis for Case-Control Studies

sensitivityfull

Sensitivity Analysis for Full Matching in Observational Studies

sensitivitymult

Sensitivity Analysis for Observational Studies with Multiple Outcomes

sensitivitymv

Sensitivity Analysis in Observational Studies

sensitivitymw

Sensitivity analysis using weighted M-statistics

sensitivityPStrat

Principal Stratification Sensitivity Analysis Functions

SensMap

Sensory and Consumer Data Mapping

sensmediation

Parametric Estimation and Sensitivity Analysis of Direct and Indirect Effects

SensMixed

Analysis of Sensory and Consumer Data in a Mixed Model Framework

sensobol

Computation of High-Order Sobol' Sensitivity Indices

SensoMineR

Sensory Data Analysis

sensors4plumes

Test and Optimise Sampling Designs Based on Plume Simulations

sensory

Simultaneous Model-Based Clustering and Imputation via a Progressive Expectation-Maximization Algorithm

sensR

Thurstonian Models for Sensory Discrimination

SenSrivastava

Datasets from Sen & Srivastava

senstrat

Sensitivity Analysis for Stratified Observational Studies

SensusR

Sensus Analytics

SentimentAnalysis

Dictionary-Based Sentiment Analysis

sentimentr

Calculate Text Polarity Sentiment

sentometrics

An Integrated Framework for Textual Sentiment Time Series Aggregation and Prediction

sentR

Provides varied techniques for big data sentiment analysis in R

seoR

SEO Related Analyses

SEPA

SEPA

sEparaTe

Maximum Likelihood Estimation and Likelihood Ratio Test Functions for Separable Variance-Covariance Structures

separationplot

Separation Plots

SEPIRA

Systems EPigenomics Inference of Regulatory Activity

seplyr

Improved Standard Evaluation Interfaces for Common Data Manipulation Tasks

seq2pathway

a novel tool for functional gene-set (or termed as pathway) analysis of next-generation sequencing data

seq2pathway.data

data set for R package seq2pathway

seq2R

Simple method to detect compositional changes in genomic sequences

SeqAlloc

Sequential Allocation for Prospective Experiments

SeqArray

Big Data Management of Whole-genome Sequence Variant Calls

SeqBayesDesign

Sequential Bayesian Design for Accelerated Life Tests

seqbias

Estimation of per-position bias in high-throughput sequencing data

seqc

RNA-seq data generated from SEQC (MAQC-III) study

seqCAT

High Throughput Sequencing Cell Authentication Toolkit

seqCBS

Copy Number Profiling using Sequencing and CBS

seqCNA

Copy number analysis of high-throughput sequencing cancer data

seqCNA.annot

Annotation for the copy number analysis of deep sequencing cancer data with seqCNA

seqcombo

Visualization Tool for Sequence Recombination and Reassortment

seqDesign

Simulation and Group Sequential Monitoring of Randomized Two-Stage Treatment Efficacy Trials with Time-to-Event Endpoints

SeqFeatR

A Tool to Associate FASTA Sequences and Features

SeqGrapheR

Simple GUI for Graph Based Visualization of Cluster of DNA Sequence Reads

SeqGSEA

Gene Set Enrichment Analysis (GSEA) of RNA-Seq Data: integrating differential expression and splicing

seqHMM

Mixture Hidden Markov Models for Social Sequence Data and Other Multivariate, Multichannel Categorical Time Series

seqICP

Sequential Invariant Causal Prediction

seqinr

Biological Sequences Retrieval and Analysis

SeqKat

Detection of Kataegis

seqLogo

Sequence logos for DNA sequence alignments

SeqMADE

Network Module-Based Model in the Differential Expression Analysis for RNA-Seq

seqMeta

Meta-Analysis of Region-Based Tests of Rare DNA Variants

seqminer

Efficiently Read Sequence Data (VCF Format, BCF Format, METAL Format and BGEN Format) into R

seqmon

Group Sequential Design Class for Clinical Trials

SeqNet

Generate RNA-Seq Data from Gene-Gene Association Networks

seqPattern

Visualising oligonucleotide patterns and motif occurrences across a set of sorted sequences

seqPERM

Generates a permutation matrix based upon a sequence.

seqplots

An interactive tool for visualizing NGS signals and sequence motif densities along genomic features using average plots and heatmaps

seqRFLP

Simulation and visualization of restriction enzyme cutting pattern from DNA sequences.

seqsetvis

Set Based Visualizations for Next-Gen Sequencing Data

SeqSQC

A bioconductor package for sample quality check with next generation sequencing data

seqtest

Sequential Triangular Test

seqTools

Analysis of nucleotide, sequence and quality content on fastq files

SequenceAnalysis

Sequence Analysis

sequences

Generic and Biological Sequences

Sequential

Exact Sequential Analysis for Poisson and Binomial Data

SequentialDesign

Observational Database Study Planning using Exact Sequential Analysis for Poisson and Binomial Data

sequenza

Copy Number Estimation from Tumor Genome Sequencing Data

sequoia

Pedigree Inference from SNPs

SeqVarTools

Tools for variant data

sergeant

Tools to Transform and Query Data with 'Apache' 'Drill'

serial

The Serial Interface Package

seriation

Infrastructure for Ordering Objects Using Seriation

serieslcb

Lower Confidence Bounds for Binomial Series System

seroincidence

Estimating Infection Rates from Serological Data

serrsBayes

Bayesian Modelling of Raman Spectroscopy

serumStimulation

serumStimulation is a data package which is used by examples in package pcaGoPromoter

servosphereR

Analyze Data Generated from Syntech Servosphere Trials

servr

A Simple HTTP Server to Serve Static Files or Dynamic Documents

sesem

Spatially Explicit Structural Equation Modeling

SesIndexCreatoR

Computation and visualization of socioeconomic indices and categories distributions

session

Functions for interacting with, saving and restoring R sessions.

sessioninfo

R Session Information

sessionTools

Tools for saving, restoring and teleporting R sessions.

SetMethods

Functions for Set-Theoretic Multi-Method Research and Advanced QCA

SetRank

Advanced Gene Set Enrichment Analysis

setRNG

Set (Normal) Random Number Generator and Seed

sets

Sets, Generalized Sets, Customizable Sets and Intervals

setter

Mutators that Work with Pipes

SetTest

Group Testing Procedures for Signal Detection and Goodness-of-Fit

settings

Software Option Settings Manager for R

setwidth

Automatically Set the Width Option on Terminal Emulators

seurat

Seurat : R toolkit for single cell genomics

Seurat

Tools for Single Cell Genomics

sevenbridges

Seven Bridges Platform API Client and Common Workflow Language Tool Builder in R

sevenC

Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs

seventyGeneData

ExpressionSets from the van't Veer and Van de Vijver breast cancer studies

severity

Mayo's Post-data Severity Evaluation

sExtinct

Calculates the historic date of extinction given a series of sighting events

sf

Simple Features for R

sfa

Stochastic Frontier Analysis

sfadv

Advanced Methods for Stochastic Frontier Analysis

sfc

Substance Flow Computation

sfdct

Constrained Triangulation for Simple Features

sFFLHD

Sequential Full Factorial-Based Latin Hypercube Design

sfinx

Straightforward Filtering Index for AP-MS Data Analysis (SFINX)

SFS

Similarity-First Search Seriation Algorithm

sfsmisc

Utilities from 'Seminar fuer Statistik' ETH Zurich

sft

Functions for Systems Factorial Technology Analysis of Data

SFtools

Space Filling Based Tools for Data Mining

SGB

Simplicial Generalized Beta Regression

SGCS

Spatial Graph Based Clustering Summaries for Spatial Point Patterns

sgd

Stochastic Gradient Descent for Scalable Estimation

sgee

Stagewise Generalized Estimating Equations

sgeostat

An Object-Oriented Framework for Geostatistical Modeling in S+

SGL

Fit a GLM (or Cox Model) with a Combination of Lasso and Group Lasso Regularization

sglasso

Lasso Method for RCON(V,E) Models

sglg

Fitting Semi-Parametric Generalized log-Gamma Regression Models

sglOptim

Generic Sparse Group Lasso Solver

sglr

An R package for power and boundary calculations in pre-licensure vaccine trials using a sequential generalized likelihood ratio test

sgmcmc

Stochastic Gradient Markov Chain Monte Carlo

sgmodel

Solves a Generic Stochastic Growth Model with a Representative Agent

sGMRFmix

Sparse Gaussian Markov Random Field Mixtures for Anomaly Detection

sgof

Multiple Hypothesis Testing

SGP

Student Growth Percentiles & Percentile Growth Trajectories

sGPCA

Sparse Generalized Principal Component Analysis

SGPdata

Exemplar Data Sets for Student Growth Percentiles (SGP) Analyses

sgPLS

Sparse Group Partial Least Square Methods

sgr

Sample Generation by Replacement

sgRSEA

Enrichment Analysis of CRISPR/Cas9 Knockout Screen Data

SGSeq

Splice event prediction and quantification from RNA-seq data

sgt

Skewed Generalized T Distribution Tree

shades

Simple Colour Manipulation

shadow

Geometric Shadow Calculations

shadowtext

Shadow Text Grob and Layer

shallot

Random Partition Distribution Indexed by Pairwise Information

shape

Functions for Plotting Graphical Shapes, Colors

ShapeChange

Change-Point Estimation using Shape-Restricted Splines

shapefiles

Read and Write ESRI Shapefiles

ShapePattern

Tools for Analyzing Planar Shape and Associated Patterns

shapeR

Collection and Analysis of Otolith Shape Data

shapes

Statistical Shape Analysis

ShapeSelectForest

Shape Selection for Landsat Time Series of Forest Dynamics

shapper

Wrapper of Python Library 'shap'

shar

Species-Habitat Associations

SharpeR

Statistical Significance of the Sharpe Ratio

sharpeRratio

Moment-Free Estimation of Sharpe Ratios

sharpr2

Estimating Regulatory Scores and Identifying ATAC-STARR Data

sharpshootR

A Soil Survey Toolkit

sharx

Models and Data Sets for the Study of Species-Area Relationships

shazam

Immunoglobulin Somatic Hypermutation Analysis

SHDZ.db

SHDZ http://genome-www5.stanford.edu/ Annotation Data (SHDZ)

sheldusr

Natural disaster losses for the USA from the SHELDUS database

SHELF

Tools to Support the Sheffield Elicitation Framework

shelltrace

Bivalve Growth and Trace Element Accumulation Model

shiftR

Fast Enrichment Analysis via Circular Permutations

shiny

Web Application Framework for R

shiny.semantic

Semantic UI Support for Shiny

shinyAce

Ace Editor Bindings for Shiny

shinyaframe

'WebVR' Data Visualizations with 'RStudio Shiny' and 'Mozilla A-Frame'

shinyalert

Easily Create Pretty Popup Messages (Modals) in 'Shiny'

shinyanimate

Animation for 'shiny' Elements

shinyBS

Twitter Bootstrap Components for Shiny

shinybusy

Busy Indicator for 'Shiny' Applications

shinycssloaders

Add CSS Loading Animations to 'shiny' Outputs

shinycustomloader

Custom Loader for Shiny Outputs

shinydashboard

Create Dashboards with 'Shiny'

shinydashboardPlus

Add More 'AdminLTE2' Components to 'shinydashboard'

shinyDND

Shiny Drag-n-Drop

shinyEffects

Customize Your Web Apps with Fancy Effects

shinyEventLogger

Logging Events in Shiny Apps

shinyFeedback

Displays User Feedback Next to Shiny Inputs

shinyFiles

A Server-Side File System Viewer for Shiny

shinyHeatmaply

Deploy 'heatmaply' using 'shiny'

shinyhelper

Easily Add Markdown Help Files to 'shiny' App Elements

shinyhttr

Progress Bars for Downloads in 'shiny' Apps

ShinyImage

Image Manipulation, with an Emphasis on Journaling

ShinyItemAnalysis

Test and Item Analysis via Shiny

shinyjqui

'jQuery UI' Interactions and Effects for Shiny

shinyjs

Easily Improve the User Experience of Your Shiny Apps in Seconds

shinyKGode

An Interactive Application for ODE Parameter Inference Using Gradient Matching

shinylogs

Record Everything that Happens in a 'Shiny' Application

shinyLP

Bootstrap Landing Home Pages for Shiny Applications

shinymanager

Authentication Management for 'Shiny' Applications

shinymaterial

Implement Material Design in Shiny Applications

shinyMatrix

Shiny Matrix Input Field

shinyMethyl

Interactive visualization for Illumina methylation arrays

shinyMethylData

Example dataset of input data for shinyMethyl

shinyMolBio

Molecular Biology Visualization Tools for 'Shiny' Apps

shinyrecap

Shiny User Interface for Multiple Source Capture Recapture Models

shinyRGL

Shiny Wrappers for RGL

shinyShortcut

Creates an Executable Shortcut for Shiny Applications

shinystan

Interactive Visual and Numerical Diagnostics and Posterior Analysis for Bayesian Models

shinyTANDEM

Provides a GUI for rTANDEM

shinytest

Test Shiny Apps

ShinyTester

Functions to Minimize Bonehead Moves While Working with 'shiny'

shinythemes

Themes for Shiny

shinyTime

A Time Input Widget for Shiny

shinytoastr

Notifications from 'Shiny'

shinyTree

jsTree Bindings for Shiny

shinyWidgets

Custom Inputs Widgets for Shiny

SHIP

SHrinkage covariance Incorporating Prior knowledge

shipunov

Miscellaneous Functions from Alexey Shipunov

SHLR

Shared Haplotype Length Regression

shock

Slope Heuristic for Block-Diagonal Covariance Selection in High Dimensional Gaussian Graphical Models

shopifyr

An R Interface to the Shopify API

ShortForm

Automatic Short Form Creation

ShortRead

FASTQ input and manipulation

shotGroups

Analyze Shot Group Data

showimage

Show an Image on an 'R' Graphics Device

showtext

Using Fonts More Easily in R Graphs

showtextdb

Font Files for the 'showtext' Package

shp2graph

Convert a SpatialLinesDataFrame Object to an 'igraph'-Class Object

shrink

Global, Parameterwise and Joint Shrinkage Factor Estimation

Shrinkage

Several Shrinkage Effect-Size Estimators

ShrinkCovMat

Shrinkage Covariance Matrix Estimators

shrinkTVP

Efficient Bayesian Inference for Time-Varying Parameter Models with Shrinkage

SHT

Statistical Hypothesis Testing Toolbox

shuffle

The Shuffle Estimator for Explainable Variance

shuffleCI

Confidence Intervals Compared via Shuffling

shutterstock

Access 'Shutterstock' REST API

SI

Stochastic Integrating

SIAMCAT

Statistical Inference of Associations between Microbial Communities And host phenoTypes

siar

Stable Isotope Analysis in R

SIBER

Stable Isotope Bayesian Ellipses in R

SIBERG

Systematic Identification of Bimodally Expressed Genes Using RNAseq Data

sicegar

Analysis of Single-Cell Viral Growth Curves

SICtools

Find SNV/Indel differences between two bam files with near relationship

sideChannelAttack

Side Channel Attack

SIDES

Subgroup Identification Based on Differential Effect Search

sidier

Substitution and Indel Distances to Infer Evolutionary Relationships

sidrar

An Interface to IBGE's SIDRA API

siebanxicor

Query Data Series from Bank of Mexico

SiER

Signal Extraction Approach for Sparse Multivariate Response Regression

sievePH

Sieve Analysis Methods for Proportional Hazards Models

sievetest

Laboratory Sieve Test Reporting Functions

sifds

Swedish inflation forecast data set

SIfEK

Statistical Inference for Enzyme Kinetics

SIFT.Hsapiens.dbSNP132

SIFT Predictions for Homo sapiens dbSNP build 132

SIFT.Hsapiens.dbSNP137

PROVEAN/SIFT Predictions for Homo sapiens dbSNP build 137

sig

Print Function Signatures

sigaR

Statistics for Integrative Genomics Analyses in R

SigCheck

Check a gene signature's prognostic performance against random signatures, known signatures, and permuted data/metadata

sigclust

Statistical Significance of Clustering

SigFuge

SigFuge

siggenes

Multiple testing using SAM and Efron's empirical Bayes approaches

SightabilityModel

Wildlife Sightability Modeling

sights

Statistics and dIagnostic Graphs for HTS

sigloc

Signal Location Estimation

sigmajs

Interface to 'Sigma.js' Graph Visualization Library

sigmaNet

Render Graphs Using 'Sigma.js'

sigminer

Capture Genomic Variation Signatures using Non-Negative Matrix Factorization

sigmoid

Sigmoid Functions for Machine Learning

SIGN

Similarity Identification in Gene Expression

signal

Signal Processing

signal.hsmm

Predict Presence of Signal Peptides

signalextraction

Real-Time Signal Extraction (Direct Filter Approach)

signalHsmm

Predict Presence of Signal Peptides

signeR

Empirical Bayesian approach to mutational signature discovery

signet

signet: Selection Inference in Gene NETworks

SignifReg

Consistent Significance Controlled Variable Selection in Linear Regression

signmedian.test

Perform Exact Sign Test and Asymptotic Sign Test in Large Samples

SigOptR

R API Wrapper for SigOpt

sigora

Signature Overrepresentation Analysis

sigPathway

Pathway Analysis

sigQC

Quality Control Metrics for Gene Signatures

sigr

Succinct and Correct Statistical Summaries for Reports

sigsquared

Gene signature generation for functionally validated signaling pathways

SigTree

Identify and Visualize Significantly Responsive Branches in a Phylogenetic Tree

SigWinR

SigWin-detector implementation in R

SII

Calculate ANSI S3.5-1997 Speech Intelligibility Index

siland

Spatial Influence of Landscape

SILGGM

Statistical Inference of Large-Scale Gaussian Graphical Model in Gene Networks

SILM

Simultaneous Inference for Linear Models

SIM

Integrated Analysis on two human genomic datasets

Sim.DiffProc

Simulation of Diffusion Processes

Sim.DiffProcGUI

Graphical User Interface for Simulation of Diffusion Processes

Sim.PLFN

Simulation of Piecewise Linear Fuzzy Numbers

sim1000G

Genotype Simulations for Rare or Common Variants Using Haplotypes from 1000 Genomes

SIMAT

GC-SIM-MS data processing and alaysis tool

simba

A Collection of functions for similarity analysis of vegetation data

SimBindProfiles

Similar Binding Profiles

simboot

Simultaneous Inference for Diversity Indices

simcausal

Simulating Longitudinal Data with Causal Inference Applications

simcdm

Simulate Cognitive Diagnostic Model ('CDM') Data

SimComp

Simultaneous Comparisons for Multiple Endpoints

SimCop

Simulate from Arbitrary Copulae

SimCorMultRes

Simulates Correlated Multinomial Responses

SimCorrMix

Simulation of Correlated Data with Multiple Variable Types Including Continuous and Count Mixture Distributions

simctest

Safe Implementation of Monte Carlo Tests

SimDesign

Structure for Organizing Monte Carlo Simulation Designs

simdistr

Assessment of Data Trial Distributions According to the Carlisle-Stouffer Method

simecol

Simulation of Ecological (and Other) Dynamic Systems

simEd

Simulation Education

simest

Constrained Single Index Model Estimation

SimEUCartelLaw

Simulation of Legal Exemption System for European Cartel Law

simex

SIMEX- And MCSIMEX-Algorithm for Measurement Error Models

simexaft

simexaft

simFrame

Simulation framework

simglm

Simulate Models Based on the Generalized Linear Model

SimHap

A comprehensive modeling framework for epidemiological outcomes and a simulation-based approach to haplotypic analysis of population-based data

SimHaz

Simulated Survival and Hazard Analysis for Time-Dependent Exposure

SimilaR

R Source Code Similarity Evaluation

similaRpeak

Metrics to estimate a level of similarity between two ChIP-Seq profiles

Simile

Interact with Simile Models

similr

Text Similarity

SimInf

A Framework for Data-Driven Stochastic Disease Spread Simulations

simIReff

Stochastic Simulation for Information Retrieval Evaluation: Effectiveness Scores

SimJoint

Simulate Joint Distribution

simLife

Simulation of Fatigue Lifetimes

SIMLR

Title: SIMLR and CIMLR Multi-kernel LeaRning methods

simmer

Discrete-Event Simulation for R

simmer.bricks

Helper Methods for 'simmer' Trajectories

simmer.plot

Plotting Methods for 'simmer'

simml

Single-Index Models with Multiple-Links

simMP

Simulate Somatic Mutations in Cancer Genomes from Mutational Processes

simmr

A Stable Isotope Mixing Model

SIMMS

Subnetwork Integration for Multi-Modal Signatures

simMSM

Simulation of Event Histories for Multi-State Models

SimMultiCorrData

Simulation of Correlated Data with Multiple Variable Types

simode

Statistical Inference for Systems of Ordinary Differential Equations using Separable Integral-Matching

simone

Statistical Inference for MOdular NEtworks (SIMoNe)

simPATHy

A Method for Simulating Data from Perturbed Biological Pathways

simPH

Tools for Simulating and Plotting Quantities of Interest Estimated from Cox Proportional Hazards Models

SimPhe

Tools to Simulate Phenotype(s) with Epistatic Interaction

simpIntLists

The package contains BioGRID interactions for various organisms in a simple format

simpleaffy

Very simple high level analysis of Affymetrix data

simpleboot

Simple Bootstrap Routines

simpleCache

Simply Caching R Objects

simplegraph

Simple Graph Data Types and Basic Algorithms

simpleNeural

An Easy to Use Multilayer Perceptron

simpleRCache

Simple R Cache

simpleroptions

Easily Manage Options Files for your Packages and Scripts

simpleSetup

Set Up R Source Code Files for Use on Multiple Machines

SimpleTable

Bayesian Inference and Sensitivity Analysis for Causal Effects from 2 x 2 and 2 x 2 x K Tables in the Presence of Unmeasured Confounding

simplexreg

Regression Analysis of Proportional Data Using Simplex Distribution

SimplicialCubature

Integration of Functions Over Simplices

SimplifyStats

Simplifies Pairwise Statistical Analyses

simplr

Basic Symbolic Expression Simplification

simPop

Simulation of Synthetic Populations for Survey Data Considering Auxiliary Information

simPopulation

Simulation of synthetic populations for surveys based on sample data

Simpsons

Detecting Simpson's Paradox

simputation

Simple Imputation

simr

Power Analysis for Generalised Linear Mixed Models by Simulation

SimRAD

Simulations to Predict the Number of RAD and GBS Loci

SimReg

Similarity Regression

simrel

Simulation of Multivariate Linear Model Data

SimRepeat

Simulation of Correlated Systems of Equations with Multiple Variable Types

SiMRiv

Simulating Multistate Movements in River/Heterogeneous Landscapes

SimRVPedigree

Simulate Pedigrees Ascertained for a Rare Disease

SimRVSequences

Simulate Genetic Sequence Data for Pedigrees

simsalapar

Tools for Simulation Studies in Parallel

SimSCRPiecewise

'Simulates Univariate and Semi-Competing Risks Data Given Covariates and Piecewise Exponential Baseline Hazards'

simsem

SIMulated Structural Equation Modeling

SimSeq

Nonparametric Simulation of RNA-Seq Data

simstandard

Generate Standardized Data

simstudy

Simulation of Study Data

simSummary

Simulation summary

simsurv

Simulate Survival Data

simtimer

Datetimes as Integers for Discrete-Event Simulations

SimTimeVar

Simulate Longitudinal Dataset with Time-Varying Correlated Covariates

simTool

Conduct Simulation Studies with a Minimal Amount of Source Code

SimuChemPC

Simulation process of 4 selection methods in predicting chemical potent compounds

simukde

Simulation with Kernel Density Estimation

simulator

An Engine for Running Simulations

simulatorZ

Simulator for Collections of Independent Genomic Data Sets

simule

A Constrained L1 Minimization Approach for Estimating Multiple Sparse Gaussian or Nonparanormal Graphical Models

SimultAnR

Correspondence and Simultaneous Analysis

SimVitD

Simulation Tools for Planning Vitamin D Studies

SIN

A SINful Approach to Selection of Gaussian Graphical Markov Models

sinaplot

An Enhanced Chart for Simple and Truthful Representation of Single Observations over Multiple Classes

sinartra

A simple web app framework for R, based on sinatra.

sincell

R package for the statistical assessment of cell state hierarchies from single-cell RNA-seq data

sindyr

Sparse Identification of Nonlinear Dynamics

sinew

Create 'roxygen2' Skeleton with Information from Function Script

SINGLE

Estimate sparse dynamic graphs using the Smooth Incremental Graphical Lasso Estimation (SINGLE) algorithm

Single.mTEC.Transcriptomes

Single Cell Transcriptome Data and Analysis of Mouse mTEC cells

SingleCaseES

A Calculator for Single-Case Effect Sizes

SingleCellExperiment

S4 Classes for Single Cell Data

singleCellTK

Interactive Analysis of Single Cell RNA-Seq Data

singscore

Rank-based single-sample gene set scoring method

sinib

Sum of Independent Non-Identical Binomial Random Variables

sinx

Sino Xmen Said

siplab

Spatial Individual-Plant Modelling

sirad

Functions for Calculating Daily Solar Radiation and Evapotranspiration

SIRE

Finding Feedback Effects in SEM and Testing for Their Significance

SIRItoGTFS

Compare SIRI Datasets to GTFS Tables

siRSM

Single-Index Response Surface Models

sirt

Supplementary Item Response Theory Models

SIS

Sure Independence Screening

sisal

Sequential Input Selection Algorithm

SISIR

Sparse Interval Sliced Inverse Regression

sismonr

Simulation of in Silico Multi-Omic Networks

SISPA

SISPA: Method for Sample Integrated Set Profile Analysis

sisus

SISUS: Stable Isotope Sourcing using Sampling

sisVIVE

Some Invalid Some Valid Instrumental Variables Estimator

sitar

Super Imposition by Translation and Rotation Growth Curve Analysis

SitesInterest

Inferring an Animal's Sites of Interest from High Resolution Data

sitmo

Parallel Pseudo Random Number Generator (PPRNG) 'sitmo' Header Files

sitools

Format a number to a string with SI prefix

sitree

Single Tree Simulator

sitreeE

Sitree Extensions

sivipm

Sensitivity Indices with Dependent Inputs

SixSigma

Six Sigma Tools for Quality Control and Improvement

SizeEstimation

Estimating the Sizes of Populations at Risk of HIV Infection from Multiple Data Sources Using a Bayesian Hierarchical Model

sizeMat

Estimate Size at Sexual Maturity

sizepower

Sample Size and Power Calculation in Micorarray Studies

SiZer

Significant Zero Crossings

SJava

The Omegahat interface for R and Java

sjdbc

JDBC Driver Interface

sjlabelled

Labelled Data Utility Functions

sjmisc

Data and Variable Transformation Functions

sjPlot

Data Visualization for Statistics in Social Science

sjstats

Collection of Convenient Functions for Common Statistical Computations

SK

Segment-Based Ordinary Kriging and Segment-Based Regression Kriging for Spatial Prediction

SKAT

SNP-Set (Sequence) Kernel Association Test

skatMeta

Efficient meta analysis for the SKAT test

skda

Sparse (Multicategory) Kernel Discriminant Analysis

skeleSim

Genetic Simulation Engine

skeletor

An R Package Skeleton Generator

skellam

Densities and Sampling for the Skellam Distribution

SkewHyperbolic

The Skew Hyperbolic Student t-Distribution

skewr

Visualize Intensities Produced by Illumina's Human Methylation 450k BeadChip

skewt

The Skewed Student-t Distribution

skewtools

Information Tools for analyze Skew-Elliptical distributions and related models

Skillings.Mack

The Skillings-Mack Test Statistic for Block Designs with Missing Observations

skimr

Compact and Flexible Summaries of Data

sklarsomega

Measuring Agreement Using Sklar's Omega Coefficient

skm

Selective k-Means

skmeans

Spherical k-Means Clustering

skpr

Design of Experiments Suite: Generate and Evaluate Optimal Designs

Sky

Canopy Openness Analyzer Package

skynet

Generates Networks from BTS Data

skyscapeR

Skyscape Archaeology Data Reduction, Visualization and Analysis

SkyWatchr

Search and Download Satellite Imagery using the SkyWatch API

sla

Two-Group Straight Line ANCOVA

slackr

Send Messages, Images, R Objects and Files to 'Slack' Channels/Users

slalom

Factorial Latent Variable Modeling of Single-Cell RNA-Seq Data

slam

Sparse Lightweight Arrays and Matrices

SLC

Slope and level change

sld

Estimation and Use of the Quantile-Based Skew Logistic Distribution

SLDAssay

Software for Analyzing Limiting Dilution Assays

sleekts

4253H, Twice Smoothing

sleepr

Analyse Activity and Sleep Behaviour

sleepwalk

Interactively Explore Dimension-Reduced Embeddings

Sleuth2

Data Sets from Ramsey and Schafer's "Statistical Sleuth (2nd Ed)"

Sleuth3

Data Sets from Ramsey and Schafer's "Statistical Sleuth (3rd Ed)"

slfm

Tools for Fitting Sparse Latent Factor Model

SLGI

Synthetic Lethal Genetic Interaction

SLHD

Maximin-Distance (Sliced) Latin Hypercube Designs

SLICER

Selective Locally Linear Inference of Cellular Expression Relationships

slickR

Create Interactive Carousels with the JavaScript 'Slick' Library

SLIDE

Single Cell Linkage by Distance Estimation is SLIDE

slideview

Compare Raster Images Side by Side with a Slider

slim

Singular Linear Models for Longitudinal Data

SlimPLS

SlimPLS multivariate feature selection

slimrec

Sparse Linear Method to Predict Ratings and Top-N Recommendations

slippymath

Slippy Map Tile Tools

sloop

Helpers for 'OOP' in R

SLOPE

Sorted L1 Penalized Estimation (SLOPE)

slouch

Stochastic Linear Ornstein-Uhlenbeck Comparative Hypotheses

slowraker

A Slow Version of the Rapid Automatic Keyword Extraction (RAKE) Algorithm

slp

Discrete Prolate Spheroidal (Slepian) Sequence Regression Smoothers

SLqPCR

Functions for analysis of real-time quantitative PCR data at SIRS-Lab GmbH

sltl

Time Series Decomposition using Loess and Harmonic Regression

sm

Smoothing Methods for Nonparametric Regression and Density Estimation

smaa

Stochastic Multi-Criteria Acceptability Analysis

smac

Sparse Multi-category Angle-Based Large-Margin Classifiers

smacof

Multidimensional Scaling

smacpod

Statistical Methods for the Analysis of Case-Control Point Data

smallarea

Fits a Fay Herriot Model

SmallCountRounding

Small Count Rounding of Tabular Data

smam

Statistical Modeling of Animal Movements

SMAP

A Segmental Maximum A Posteriori Approach to Array-CGH Copy Number Profiling

smapr

Acquisition and Processing of NASA Soil Moisture Active-Passive (SMAP) Data

smart

Sparse Multivariate Analysis via Rank Transformation

smartdata

Data Preprocessing

SmartEDA

Summarize and Explore the Data

SmarterPoland

Tools for Accessing Various Datasets Developed by the Foundation SmarterPoland.pl

SMARTp

Sample Size for SMART Designs in Non-Surgical Periodontal Trials

smartR

Spatial Management and Assessment of Demersal Resources for Trawl Fisheries

SmartSifter

Online Unsupervised Outlier Detection Using Finite Mixtures with Discounting Learning Algorithms

smartsizer

Power Analysis for a SMART Design

SmartSVA

Fast and Robust Surrogate Variable Analysis

smatr

(Standardised) Major Axis Estimation and Testing Routines

smbinning

Scoring Modeling and Optimal Binning

SMC

Sequential Monte Carlo (SMC) Algorithm

SmCCNet

Sparse Multiple Canonical Correlation Network Analysis Tool

smcfcs

Multiple Imputation of Covariates by Substantive Model Compatible Fully Conditional Specification

smco

A simple Monte Carlo optimizer using adaptive coordinate sampling

SMCP

Smoothed minimax concave penalization (SMCP) method for genome-wide association studies.

SMCRM

Data Sets for Statistical Methods in Customer Relationship Management by Kumar and Petersen (2012).

smcure

Fit Semiparametric Mixture Cure Models

smcUtils

Utility functions for sequential Monte Carlo

smdata

Data to Accompany Smithson & Merkle, 2013

smdc

Document Similarity

smds

Symbolic Multidimensional Scaling

sme

Smoothing-Splines Mixed-Effects Models

smerc

Statistical Methods for Regional Counts

SMFI5

R functions and data from Chapter 5 of 'Statistical Methods for Financial Engineering'

SMFilter

Filtering Algorithms for the State Space Models on the Stiefel Manifold

smfsb

SMfSB 2e: Stochastic Modelling for Systems Biology, second edition

smicd

Statistical Methods for Interval Censored Data

smint

Smooth Multivariate Interpolation for Gridded and Scattered Data

SMIR

Companion to Statistical Modelling in R

smirnov

Provides two taxonomic coefficients from E. S. Smirnov "Taxonomic analysis" (1969) book

Smisc

Sego Miscellaneous

SMITE

Significance-based Modules Integrating the Transcriptome and Epigenome

SmithWilsonYieldCurve

Smith-Wilson Yield Curve Construction

SMITIDstruct

Data Structure and Manipulations Tool for Host and Viral Population

SMITIDvisu

Visualize Data for Host and Viral Population from 'SMITIDstruct' using HTMLwidgets

SML

Statistical Machine Learning

SMLoutliers

Outlier Detection Using Statistical and Machine Learning Methods

SMM

Simulation and Estimation of Multi-State Discrete-Time Semi-Markov and Markov Models

SMMA

Soft Maximin Estimation for Large Scale Array-Tensor Models

SMNCensReg

Fitting Univariate Censored Regression Model Under the Family of Scale Mixture of Normal Distributions

smnet

Smoothing for Stream Network Data

smoof

Single and Multi-Objective Optimization Test Functions

smooth

Forecasting Using State Space Models

smoothAPC

Smoothing of Two-Dimensional Demographic Data, Optionally Taking into Account Period and Cohort Effects

smoother

Functions Relating to the Smoothing of Numerical Data

SmoothHazard

Estimation of Smooth Hazard Models for Interval-Censored Data with Applications to Survival and Illness-Death Models

smoothHR

Smooth Hazard Ratio Curves Taking a Reference Value

smoothie

Two-dimensional Field Smoothing

smoothmest

Smoothed M-estimators for 1-dimensional location

smoothr

Smooth and Tidy Spatial Features

smoothROCtime

Smooth Time-Dependent ROC Curve Estimation

smoothSurv

Survival Regression with Smoothed Error Distribution

smoothtail

Smooth Estimation of GPD Shape Parameter

SmoothWin

Soft Windowing on Linear Regression

smotefamily

A Collection of Oversampling Techniques for Class Imbalance Problem Based on SMOTE

smovie

Some Movies to Illustrate Concepts in Statistics

smpic

Creates Images Sized for Social Media

SMPracticals

Practicals for Use with Davison (2003) Statistical Models

SMR

Externally Studentized Midrange Distribution

sms

Spatial Microsimulation

smss

Datasets for Agresti and Finlay's "Statistical Methods for the Social Sciences"

smurf

Sparse Multi-Type Regularized Feature Modeling

SMUT

Multi-SNP Mediation Intersection-Union Test

SMVar

Structural Model for variances

sn

The Skew-Normal and Related Distributions Such as the Skew-t

sna

Tools for Social Network Analysis

SNAData

Social Networks Analysis Data Examples

SNAGEE

Signal-to-Noise applied to Gene Expression Experiments

SNAGEEdata

SNAGEE data

snakecase

Convert Strings into any Case

SnakeCharmR

R and Python Integration

SnakesAndLaddersAnalysis

Play and Analyse the Game of Snakes and Ladders

snapCGH

Segmentation, normalisation and processing of aCGH data.

snappier

Compress and Decompress 'Snappy' Encoded Data

snapshot

Gadget N-body cosmological simulation code snapshot I/O utilities

snem

EM Algorithm for Multivariate Skew-Normal Distribution with Overparametrization

snfa

Smooth Non-Parametric Frontier Analysis

SNFtool

Similarity Network Fusion

snht

Standard Normal Homogeneity Test

snipEM

Snipping Methods for Robust Estimation and Clustering

snm

Supervised Normalization of Microarrays

snn

Stabilized Nearest Neighbor Classifier

snnR

Sparse Neural Networks for Genomic Selection in Animal Breeding

snort

Social Network-Analysis On Relational Tables

snotelr

Calculate and Visualize 'SNOTEL' Snow Data and Seasonality

snow

Simple Network of Workstations

Snowball

Snowball Stemmers

SnowballC

Snowball Stemmers Based on the C 'libstemmer' UTF-8 Library

snowboot

Bootstrap Methods for Network Inference

snowfall

Easier cluster computing (based on snow).

snowflakes

Random Snowflake Generator

snowFT

Fault Tolerant Simple Network of Workstations

snp.plotter

snp.plotter

snpar

Supplementary Non-parametric Statistics Methods

SNPassoc

SNPs-based whole genome association studies

SNPchip

Visualizations for copy number alterations

SNPediaR

Query data from SNPedia

snpEnrichment

SNPs Enrichment Analysis

SNPhood

SNPhood: Investigate, quantify and visualise the epigenomic neighbourhood of SNPs using NGS data

SNPhoodData

Additional and more complex example data for the SNPhood package

SNPknock

Knockoffs for Hidden Markov Models and Genetic Data

snplist

Tools to Create Gene Sets

SNPlocs.Hsapiens.dbSNP.20101109

SNP locations for Homo sapiens (dbSNP Build 132)

SNPlocs.Hsapiens.dbSNP.20120608

SNP locations for Homo sapiens (dbSNP Build 137)

SNPlocs.Hsapiens.dbSNP141.GRCh38

SNP locations for Homo sapiens (dbSNP Build 141)

SNPlocs.Hsapiens.dbSNP142.GRCh37

SNP locations for Homo sapiens (dbSNP Build 142)

SNPlocs.Hsapiens.dbSNP144.GRCh37

SNP locations for Homo sapiens (dbSNP Build 144)

SNPlocs.Hsapiens.dbSNP144.GRCh38

SNP locations for Homo sapiens (dbSNP Build 144)

SNPlocs.Hsapiens.dbSNP149.GRCh38

SNP locations for Homo sapiens (dbSNP Build 149)

SNPlocs.Hsapiens.dbSNP150.GRCh38

SNP locations for Homo sapiens (dbSNP Build 150)

SNPlocs.Hsapiens.dbSNP151.GRCh38

SNP locations for Homo sapiens (dbSNP Build 151)

sNPLS

NPLS Regression with L1 Penalization

SNPmaxsel

Maximally selected statistics for SNP data

SNPMClust

Bivariate Gaussian Genotype Clustering and Calling for Illumina Microarrays

snpReady

Preparing Genotypic Datasets in Order to Run Genomic Analysis

SNPRelate

Parallel Computing Toolset for Relatedness and Principal Component Analysis of SNP Data

SNPRelate

Parallel Computing Toolset for Genome-Wide Association Studies (GWAS)

snpStats

SnpMatrix and XSnpMatrix classes and methods

snpStatsWriter

Flexible writing of snpStats objects to flat files

SNPtools

Accessing, subsetting and plotting mouse SNPs.

sns

Stochastic Newton Sampler (SNS)

SNscan

Scan Statistics in Social Networks

SNSequate

Standard and Nonstandard Statistical Models and Methods for Test Equating

SOAR

Memory management in R by delayed assignments

sobolnp

Nonparametric Sobol Estimator with Bootstrap Bandwidth

SobolSequence

Sobol Sequences with Better Two-Dimensional Projections

soc.ca

Specific Correspondence Analysis for the Social Sciences

social

Social Autocorrelation

SocialMediaLab

Tools for Collecting Social Media Data and Generating Networks for Analysis

SocialMediaMineR

A Social Media Search and Analytic Tool

socialmixr

Social Mixing Matrices for Infectious Disease Modelling

SocialNetworks

Generates social networks based on distance.

SocialPosition

Social Position Indicators Construction Toolbox

socviz

Utility Functions and Data Sets for Data Visualization

SOD

SOD for multidimensional scaling.

SoDA

Functions and Examples for "Software for Data Analysis"

sodavis

SODA: Main and Interaction Effects Selection for Logistic Regression, Quadratic Discriminant and General Index Models

SODC

Optimal Discriminant Clustering(ODC) and Sparse Optimal Discriminant Clustering(SODC)

sodium

A Modern and Easy-to-Use Crypto Library

sofa

Connector to 'CouchDB'

Sofi

Interfaz interactiva con fines didacticos

SOFIA

Making Sophisticated and Aesthetical Figures in R

softclassval

Soft Classification Performance Measures

SoftClustering

Soft Clustering Algorithms

softermax

Read Exported Data from 'SoftMax Pro'

softImpute

Matrix Completion via Iterative Soft-Thresholded SVD

softmaxreg

Training Multi-Layer Neural Network for Softmax Regression and Classification

SoftRandomForest

Classification Random Forests for Soft Decision Trees

soGGi

Visualise ChIP-seq, MNase-seq and motif occurrence as aggregate plots Summarised Over Grouped Genomic Intervals

SOIL

Sparsity Oriented Importance Learning

soil.spec

Soil Spectroscopy Tools and Reference Models

soilcarbon

Tools to Analyze Soil Carbon Database Created by Powell Center Working Group

soilDB

Soil Database Interface

SoilHyP

Soil Hydraulic Properties

soilphysics

Soil Physical Analysis

soilprofile

A package to consistently represent soil properties along a soil profile

SoilR

Models of Soil Organic Matter Decomposition

soiltexture

Functions for Soil Texture Plot, Classification and Transformation

soilwater

Implementation of Parametric Formulas for Soil Water Retention or Conductivity Curve

Sojourn

Apply Sojourn Methods for Processing ActiGraph Accelerometer Data

Sojourn.Data

Supporting Objects for Sojourn Accelerometer Methods

sokoban

Sokoban Game

solaR

Radiation and Photovoltaic Systems

solarius

An R Interface to SOLAR

solarPos

Solar Position Algorithm for Solar Radiation Applications

solartime

Utilities Dealing with Solar Time Such as Sun Position and Time of Sunrise

solidearthtide

Solid Earth Tide Computation

solitude

An Implementation of Isolation Forest

SOLOMON

Parentage analysis

solr

General Purpose R Interface to Solr

solrad

Calculating Solar Radiation and Related Variables Based on Location, Time and Topographical Conditions

solrium

General Purpose R Interface to 'Solr'

solvebio

The Official SolveBio API Client

SolveLS

Iterative Methods for Solving Linear System of Equations

SolveRationalMatrixEquation

Solve Rational Matrix Equation

som

Self-Organizing Map

som.nn

Topological k-NN Classifier Based on Self-Organising Maps

soma

General-Purpose Optimisation With the Self-Organising Migrating Algorithm

SomatiCA

SomatiCA: identifying, characterizing, and quantifying somatic copy number aberrations from cancer genome sequencing

SomatiCAData

An example cancer whole genome sequencing data for the SomatiCA package

SomaticCancerAlterations

Somatic Cancer Alterations

SomaticSignatures

Somatic Signatures

SOMbrero

SOM Bound to Realize Euclidean and Relational Outputs

somebm

some Brownian motions simulation functions

someKfwer

Controlling the Generalized Familywise Error Rate

someMTP

Some Multiple Testing Procedures

sommer

Solving Mixed Model Equations in R

somplot

Visualisation of hexagonal Kohonen maps

somspace

Spatial Analysis with Self-Organizing Maps

sonar

Fundamental Formulas for Sonar

SongEvo

An Individual-Based Model of Bird Song Evolution

sonicLength

Estimating Abundance of Clones from DNA Fragmentation Data

sonify

Data Sonification - Turning Data into Sound

soobench

Single Objective Optimization Benchmark Functions

SOPIE

Non-Parametric Estimation of the Off-Pulse Interval of a Pulsar

soptdmaeA

Sequential Optimal Designs for Two-Colour cDNA Microarray Experiments

soql

Helps Make Socrata Open Data API Calls

SOR

Estimation using Sequential Offsetted Regression

SorptionAnalysis

Static Adsorption Experiment Plotting and Analysis

SortableHTMLTables

Turns a data frame into an HTML file containing a sortable table.

SortedEffects

Estimation and Inference Methods for Sorted Causal Effects and Classification Analysis

sortinghat

sortinghat

sorvi

Finnish Open Government Data Toolkit

sos

Search Contributed R Packages, Sort by Package

sos4R

Client for OGC Sensor Observation Services

sotkanet

Sotkanet Open Data Access and Analysis

sotu

United States Presidential State of the Union Addresses

sound

A Sound Interface for R

soundecology

Soundscape Ecology

SoundexBR

Phonetic-Coding for Portuguese

soundgen

Parametric Voice Synthesis

SOUP

Stochastic Ordering Using Permutations (and Pairwise Comparisons)

source.gist

Read R code from a GitHub Gist

sourceR

Fits a Non-Parametric Bayesian Source Attribution Model

SourceSet

A Graphical Model Approach to Identify Primary Genes in Perturbed Biological Pathways

sourcetools

Tools for Reading, Tokenizing and Parsing R Code

soybeancdf

soybeancdf

soybeanprobe

Probe sequence data for microarrays of type soybean

SoyNAM

Soybean Nested Association Mapping Dataset

sp

Classes and Methods for Spatial Data

sp23design

Design and Simulation of seamless Phase II-III Clinical Trials

sp500SlidingWindow

Sliding Window Investment Analysis

spa

Implements The Sequential Predictions Algorithm

SPA3G

SPA3G: R package for the method of Li and Cui (2012)

spaa

SPecies Association Analysis

SpaCCr

Spatial Convex Clustering

space

Sparse PArtial Correlation Estimation

SPACECAP

A Program to Estimate Animal Abundance and Density using Bayesian Spatially-Explicit Capture-Recapture Models

spaceExt

Extension of SPACE

spacejam

Sparse conditional graph estimation with joint additive models.

spaceNet

Latent Space Models for Multidimensional Networks

SpacePAC

Identification of Mutational Clusters in 3D Protein Space via Simulation.

spacesRGB

Standard and User-Defined RGB Color Spaces, with Conversion Between RGB and CIE XYZ

spacesXYZ

CIE XYZ and some of Its Derived Color Spaces

spacetime

Classes and Methods for Spatio-Temporal Data

spacodiR

Spatial and Phylogenetic Analysis of Community Diversity

spacom

Spatially Weighted Context Data for Multilevel Modelling

spacyr

Wrapper to the 'spaCy' 'NLP' Library

SPADAR

Spherical Projections of Astronomical Data

spAddins

A Set of RStudio Addins

spade

SPADE -- An analysis and visualization tool for Flow Cytometry

SpadeR

Species-Richness Prediction and Diversity Estimation with R

SpaDES

Develop and Run Spatially Explicit Discrete Event Simulation Models

SpaDES.addins

Development Tools for 'SpaDES' and 'SpaDES' Modules

SpaDES.core

Core Utilities for Developing and Running Spatially Explicit Discrete Event Simulation Models

SpaDES.tools

Additional Tools for Developing Spatially Explicit Discrete Event Simulation (SpaDES) Models

spaero

Software for Project AERO

spagmix

Artificial Spatial and Spatiotemporal Densities on Bounded Windows

spam

SPArse Matrix

spam64

64-Bit Extension of the SPArse Matrix R Package 'spam'

spaMM

Mixed-Effect Models, Particularly Spatial Models

spanel

Spatial Panel Data Models

spanish

Translate Quantities from Strings to Integer and Back. Misc Functions on Spanish Data

spant

MR Spectroscopy Analysis Tools

SPAr

Perform rare variants association analysis based on summation of partition approaches

sparc

Semiparametric Generalized Linear Models

sparcl

Perform Sparse Hierarchical Clustering and Sparse K-Means Clustering

spareserver

Client Side Load Balancing

spark

'Sparklines' in the 'R' Terminal

spark.sas7bdat

Read in 'SAS' Data ('.sas7bdat' Files) into 'Apache Spark'

sparkavro

Load Avro file into 'Apache Spark'

sparkbq

Google 'BigQuery' Support for 'sparklyr'

sparkline

'jQuery' Sparkline 'htmlwidget'

sparklyr

R Interface to Apache Spark

sparklyr.nested

A 'sparklyr' Extension for Nested Data

SparkR

R Front End for 'Apache Spark'

sparkTable

Sparklines and Graphical Tables for TeX and HTML

sparktex

Generate LaTeX sparklines in R

sparktf

Interface for 'TensorFlow' 'TFRecord' Files with 'Apache Spark'

sparkwarc

Load WARC Files into Apache Spark

sparkxgb

Interface for 'XGBoost' on 'Apache Spark'

SPARQL

SPARQL client

sparr

Spatial and Spatiotemporal Relative Risk

sparseBC

Sparse Biclustering of Transposable Data

sparsebn

Learning Sparse Bayesian Networks from High-Dimensional Data

sparsebnUtils

Utilities for Learning Sparse Bayesian Networks

SparseDC

Implementation of SparseDC Algorithm

sparsediscrim

Sparse and Regularized Discriminant Analysis

sparseDOSSA

Sparse Data Observations for Simulating Synthetic Abundance

sparseEigen

Computation of Sparse Eigenvectors of a Matrix

SparseFactorAnalysis

Scaling Count and Binary Data with Sparse Factor Analysis

sparseFLMM

Functional Linear Mixed Models for Irregularly or Sparsely Sampled Data

SparseGrid

Sparse grid integration in R

sparseHessianFD

Numerical Estimation of Sparse Hessians

sparseIndexTracking

Design of Portfolio of Stocks to Track an Index

sparseinv

Computation of the Sparse Inverse Subset

sparseLDA

Sparse Discriminant Analysis

SparseLearner

Sparse Learning Algorithms Using a LASSO-Type Penalty for Coefficient Estimation and Model Prediction

sparseLTSEigen

RcppEigen back end for sparse least trimmed squares regression

SparseM

Sparse Linear Algebra

sparseMatEst

Sparse Matrix Estimation and Inference

SparseMDC

Implementation of SparseMDC Algorithm

SparseMSE

Multiple Systems Estimation for Sparse Capture Data

sparseMVN

Multivariate Normal Functions for Sparse Covariance and Precision Matrices

sparsenet

Fit Sparse Linear Regression Models via Nonconvex Optimization

sparsepca

Sparse Principal Component Analysis (SPCA)

sparsepp

'Rcpp' Interface to 'sparsepp'

sparsereg

Sparse Bayesian Models for Regression, Subgroup Analysis, and Panel Data

sparseSEM

Sparse-aware Maximum Likelihood for Structural Equation Models

SparseSignatures

SparseSignatures

sparsestep

SparseStep Regression

sparsesvd

Sparse Truncated Singular Value Decomposition (from 'SVDLIBC')

sparseSVM

Solution Paths of Sparse High-Dimensional Support Vector Machine with Lasso or Elastic-Net Regularization

SparseTSCGM

Sparse Time Series Chain Graphical Models

sparsevar

A Package for Sparse VAR/VECM Estimation

sparsio

I/O Operations with Sparse Matrices

spartan

Simulation Parameter Analysis R Toolkit ApplicatioN: 'spartan'

SPAS

Stratified-Petersen Analysis System

spass

Study Planning and Adaptation of Sample Size

spatcounts

Spatial count regression

spate

Spatio-Temporal Modeling of Large Data Using a Spectral SPDE Approach

SpatEntropy

Spatial Entropy Measures

SPAtest

Score Test and Meta-Analysis Based on Saddlepoint Approximation

spatgraphs

Graph Edge Computations for Spatial Point Patterns

spatial

Functions for Kriging and Point Pattern Analysis

spatial.gev.bma

Hierarchical spatial generalized extreme value (GEV) modeling with Bayesian Model Averaging (BMA)

spatial.tools

R Functions for Working with Spatial Data

SpatialAcc

Spatial Accessibility Measures

SpatialBall

Spatial NBA Visualization and Analysis

spatialClust

Spatial Clustering using Fuzzy Geographically Weighted Clustering

spatialCovariance

Computation of Spatial Covariance Matrices for Data on Rectangles

spatialEco

Spatial Analysis and Modelling Utilities

SpatialEpi

Methods and Data for Spatial Epidemiology

SpatialEpiApp

A Shiny Web Application for the Analysis of Spatial and Spatio-Temporal Disease Data

SpatialExtremes

Modelling Spatial Extremes

spatialfil

Application of 2D Convolution Kernel Filters to Matrices or 3D Arrays

SpatialFloor

Spatial Floor Simulation (Isotropic)

spatialfusion

Multivariate Analysis of Spatial Data Using a Unifying Spatial Fusion Framework

SpatialGraph

SpatialGraph Class

spatialkernel

Non-Parametric Estimation of Spatial Segregation in a Multivariate Point Process

SpatialML

Spatial Machine Learning

spatialnbda

Performs spatial NBDA in a Bayesian context

SpatialNP

Multivariate Nonparametric Methods Based on Spatial Signs and Ranks

SpatialPack

Tools for Assessment the Association Between Two Spatial Processes

SpatialPosition

Spatial Position Models

spatialprobit

Spatial Probit Models

spatialreg

Spatial Regression Analysis

spatialrisk

Calculating Concentration Risk under Solvency II

spatialsegregation

Segregation Measures for Multitype Spatial Point Patterns

spatialTailDep

Estimation of spatial tail dependence models

SpatialTools

Tools for Spatial Data Analysis

SpatialVS

Spatial Variable Selection

SpatialVx

Spatial Forecast Verification

spatialwarnings

Spatial Early Warning Signals of Ecosystem Degradation

spatialwidget

Converts Spatial Data to Javascript Object Notation (JSON) for Use in Htmlwidgets

SpaTimeClus

Model-Based Clustering of Spatio-Temporal Data

SpatioTemporal

Spatio-Temporal Model Estimation

SpatMCA

Regularized Spatial Maximum Covariance Analysis

SpatPCA

Regularized Principal Component Analysis for Spatial Data

SpATS

Spatial Analysis of Field Trials with Splines

spatsoc

Group Animal Relocation Data by Spatial and Temporal Relationship

spatstat

Spatial Point Pattern Analysis, Model-Fitting, Simulation, Tests

spatstat.data

Datasets for 'spatstat'

spatstat.local

Extension to 'spatstat' for Local Composite Likelihood

spatstat.utils

Utility Functions for 'spatstat'

spatsurv

Bayesian Spatial Survival Analysis with Parametric Proportional Hazards Models

spbabel

Convert Spatial Data Using Tidy Tables

spBayes

Univariate and Multivariate Spatial-Temporal Modeling

spBayesSurv

Bayesian Modeling and Analysis of Spatially Correlated Survival Data

Spbsampling

Spatially Balanced Sampling

spc

Statistical Process Control -- Calculation of ARL and Other Control Chart Performance Measures

spc4sts

Statistical Process Control for Stochastic Textured Surfaces

spcadjust

Functions for Calibrating Control Charts

SPCALDA

A New Reduced-Rank Linear Discriminant Analysis Method

SPCAvRP

Sparse Principal Component Analysis via Random Projections (SPCAvRP)

SPCDAnalyze

Design and Analyze Studies using the Sequential Parallel Comparison Design

spclust

Selective phenotyping for experimental crosses

spcosa

Spatial Coverage Sampling and Random Sampling from Compact Geographical Strata

spcov

Sparse Estimation of a Covariance Matrix

spCP

Spatially Varying Change Points

spcr

Sparse Principal Component Regression

spd

Semi Parametric Distribution

spData

Datasets for Spatial Analysis

spdep

Spatial Dependence: Weighting Schemes, Statistics and Models

spdownscale

Spatial Downscaling Using Bias Correction Approach

spdplyr

Data Manipulation Verbs for the Spatial Classes

spduration

Split-Population Duration (Cure) Regression

spdynmod

Spatio-Dynamic Wetland Plant Communities Model

spe

Stochastic Proximity Embedding

speaq

Tools for Nuclear Magnetic Resonance (NMR) Spectra Alignment, Peak Based Processing, Quantitative Analysis and Visualizations

speaq2

Wavelet Based Tools for Feature-Wise Analysis and Quantification of Nuclear Magnetic Resonance (NMR) Spectra

spearmanCI

Jackknife Euclidean / Empirical Likelihood Inference for Spearman's Rho

spec

A Data Specification Format and Interface

speccalt

Alternative spectral clustering, with automatic estimation of k.

SpecDetec

Change Points Detection with Spectral Clustering

SpecHelpers

Spectroscopy Related Utilities

SPECIES

Statistical package for species richness estimation

speciesgeocodeR

Prepare Species Distributions for the Use in Phylogenetic Analyses

SpeciesMix

Fit Mixtures of Archetype Species

specificity

Specificity of personality trait-outcome (or trait-trait) associations

specklestar

Reduction of Speckle Data from BTA 6-m Telescope

specL

specL - Prepare Peptide Spectrum Matches for Use in Targeted Proteomics

specmine

Metabolomics and Spectral Data Analysis and Mining

SpeCond

Condition specific detection from expression data

SpecsVerification

Forecast Verification Routines for Ensemble Forecasts of Weather and Climate

spectacles

Storing, Manipulating and Analysis Spectroscopy and Associated Data

spectral

Common Methods of Spectral Data Analysis

spectral.methods

Singular Spectrum Analysis (SSA) Tools for Time Series Analysis

spectralAnalysis

Pre-Process, Visualize and Analyse Process Analytical Data, by Spectral Data Measurements Made During a Chemical Process

SpectralGEM

Discovering Genetic Ancestry Using Spectral Graph Theory

spectralGP

Approximate Gaussian Processes Using the Fourier Basis

spectralGraphTopology

Learning Graphs from Data via Spectral Constraints

SpectralMap

Diffusion Map and Spectral Map

spectrino

Spectra Viewer, Organizer, Data Preparation and Property Blocks

spectrolab

Class and Methods for Hyperspectral Data

Spectrum

Fast Adaptive Spectral Clustering for Single and Multi-View Data

SPEDInstabR

Estimation of the Relative Importance of Factors Affecting Species Distribution Based on Stability Concept

speedglm

Fitting Linear and Generalized Linear Models to Large Data Sets

speedR

A GUI based importing and filtering tool

speedRlibs

Package containing the required libraries (jars) for speedR

speedRlibTF

speedR's table filter library

spef

Semiparametric Estimating Functions

speff2trial

Semiparametric efficient estimation for a two-sample treatment effect

SPEI

Calculation of the Standardised Precipitation-Evapotranspiration Index

spellcheckr

Correct the Spelling of a Given Word in the English Language

spelling

Tools for Spell Checking in R

SPEM

S-system parameter estimation method

spemd

A Bi-Dimensional Implementation of the Empirical Mode Decomposition for Spatial Data

sperich

Auxiliary Functions to Estimate Centers of Biodiversity

sperrorest

Perform Spatial Error Estimation and Variable Importance in Parallel

spew

SPEW Framework for Generating Synthetic Ecosystems

spex

Spatial Extent Tools

spfrontier

Spatial Stochastic Frontier Models

spFSR

Feature Selection and Ranking by Simultaneous Perturbation Stochastic Approximation

spftir

Pre-Processing and Analysis of Mid-Infrared Spectral Region

spGARCH

Spatial ARCH and GARCH Models (spGARCH)

spgrass6

Interface Between GRASS 6+ Geographical Information System and R

spgs

Statistical Patterns in Genomic Sequences

spgwr

Geographically Weighted Regression

sphereplot

Spherical plotting

SphericalCubature

Numerical Integration over Spheres and Balls in n-Dimensions; Multivariate Polar Coordinates

SphericalK

Spherical K-Function

SpherWave

Spherical Wavelets and SW-based Spatially Adaptive Methods

sphet

Estimation of Spatial Autoregressive Models with and without Heteroscedasticity

spi

Compute SPI index

SPIA

Signaling Pathway Impact Analysis (SPIA) using combined evidence of pathway over-representation and unusual signaling perturbations

SPIAssay

A genetic-based assay for the identification of cell lines

spider

Species Identity and Evolution in R

spiderbar

Parse and Test Robots Exclusion Protocol Files and Rules

SpidermiR

SpidermiR: An R/Bioconductor package for integrative network analysis with miRNA data

spiders

Fits Predator Preferences Model

SPIGA

Compute SPI Index using the Methods Genetic Algorithm and Maximum Likelihood

SpikeIn

Affymetrix Spike-In Experiment Data

SpikeInSubset

Part of Affymetrix's Spike-In Experiment Data

spikeLI

Affymetrix Spike-in Langmuir Isotherm Data Analysis Tool

spikes

Detecting Election Fraud from Irregularities in Vote-Share Distributions

spikeslab

Prediction and variable selection using spike and slab regression

spikeSlabGAM

Bayesian Variable Selection and Model Choice for Generalized Additive Mixed Models

SPIn

Simulation-efficient Shortest Probability Intervals

SPINA

Structure Parameter Inference Approach

spinBayes

Semi-Parametric Gene-Environment Interaction via Bayesian Variable Selection

spind

Spatial Methods and Indices

spinifex

Manual Tours, Manual Control of Dynamic Projections of Numeric Multivariate Data

spinyReg

Sparse Generative Model and Its EM Algorithm

spkTools

Methods for Spike-in Arrays

splancs

Spatial and Space-Time Point Pattern Analysis

splashr

Tools to Work with the 'Splash' 'JavaScript' Rendering and Scraping Service

splatter

Simple Simulation of Single-cell RNA Sequencing Data

splicegear

splicegear

spliceR

Classification of alternative splicing and prediction of coding potential from RNA-seq data.

spliceSites

A bioconductor package for exploration of alignment gap positions from RNA-seq data

SplicingGraphs

Create, manipulate, visualize splicing graphs, and assign RNA-seq reads to them

splines2

Regression Spline Functions and Classes

splineTCDiffExpr

Time-course differential gene expression data analysis using spline regression models followed by gene association network reconstruction

splineTimeR

Time-course differential gene expression data analysis using spline regression models followed by gene association network reconstruction

splinetree

Longitudinal Regression Trees and Forests

SPLINTER

Splice Interpreter Of Transcripts

splitFeas

Multi-Set Split Feasibility

splitfngr

Combined Evaluation and Split Access of Functions

splithalf

Calculate Task Split Half Reliability Estimates

splithalfr

Extensible Bootstrapped Split-Half Reliabilities

SplitReg

Split Regularized Regression

splitstackshape

Stack and Reshape Datasets After Splitting Concatenated Values

splm

Econometric Models for Spatial Panel Data

splot

Split Plot

splots

Visualization of high-throughput assays in microtitre plate or slide format

spls

Sparse Partial Least Squares (SPLS) Regression and Classification

splus2R

Supplemental S-PLUS Functionality in R

splusTimeDate

Times and Dates from S-PLUS

splusTimeSeries

Time Series from S-PLUS

spm

Spatial Predictive Modeling

spm12r

Wrapper Functions for 'SPM' (Statistical Parametric Mapping) Version 12 from the 'Wellcome' Trust Centre for 'Neuroimaging'

spMaps

Europe SpatialPolygonsDataFrame Builder

spMC

Continuous-Lag Spatial Markov Chains

SPmlficmcm

Semiparametric Maximum Likelihood Method for Interactions Gene-Environment in Case-Mother Control-Mother Designs

spmoran

Moran's Eigenvector-Based Spatial Regression Models

SPMS

Sub-Pathway Mining Software

spnet

Plotting (Social) Networks on Maps

SpNetPrep

Linear Network Preprocessing for Spatial Statistics

SpNMF

Supervised NMF

spnn

Scale Invariant Probabilistic Neural Networks

spNNGP

Spatial Regression Models for Large Datasets using Nearest Neighbor Gaussian Processes

spocc

Interface to Species Occurrence Data Sources

spoccutils

Utilities for Use with 'spocc'

SPODT

Spatial Oblique Decision Tree

SPONGE

Sparse Partial Correlations On Gene Expression

spongebob

SpongeBob-Case Converter : spOngEboB-CASe CoNVertER

spongecake

Transform a Movie into a Synthetic Picture

sporm

Semiparametric proportional odds rate model

sport

Sequential Pairwise Online Rating Techniques

SportsAnalytics

Infrastructure for Sports Analytics

SPOT

Sequential Parameter Optimization Toolbox

spotGUI

Graphical User Interface for the Package 'SPOT'

spotifyr

R Wrapper for the 'Spotify' Web API

spotSegmentation

Microarray Spot Segmentation and Gridding for Blocks of Microarray Spots

spp

ChIP-Seq Processing Pipeline

SPPcomb

Combining Different Spatial Datasets in Cancer Risk Estimation

sppmix

Modeling Spatial Poisson and Related Point Processes

spray

Sparse Arrays and Multivariate Polynomials

spreadr

Simulating Spreading Activation in a Network

spreadsheets

Read from and write to spreadsheets in Renjin R. Supports xls, xlsx, and ods files

SPREDA

Statistical Package for Reliability Data Analysis

SPreFuGED

Selecting a Predictive Function for a Given Gene Expression Data

SPreg

Bias Reduction in the Skew-Probit Model for a Binary Response

sprex

Calculate Species Richness and Extrapolation Metrics

sprint

Simple Parallel R INTerface

sprinter

Framework for Screening Prognostic Interactions

sprintfr

An Easy Interface to String Formatting

sprm

Sparse and Non-Sparse Partial Robust M Regression and Classification

sprsmdl

Sparse modeling toolkit

SPRT

Wald's Sequential Probability Ratio Test

spsann

Optimization of Sample Configurations using Spatial Simulated Annealing

spselect

Selecting Spatial Scale of Covariates in Regression Models

spsh

Estimation and Prediction of Parameters of Various Soil Hydraulic Property Models

spsi

Shape-Preserving Uni-Variate and Bi-Variate Spline Interpolation

SPSL

Site Percolation on Square Lattices (SPSL)

spsmooth

spsmooth: An Extension Package for 'mgcv'.

spsur

Spatial Seemingly Unrelated Regression Models

spsurvey

Spatial Survey Design and Analysis

spt

Sierpinski Pedal Triangle

spTDyn

Spatially Varying and Spatio-Temporal Dynamic Linear Models

sptemExp

Constrained Spatiotemporal Mixed Models for Exposure Estimation

spTest

Nonparametric Hypothesis Tests of Isotropy and Symmetry

spThin

Functions for Spatial Thinning of Species Occurrence Records for Use in Ecological Models

spTimer

Spatio-Temporal Bayesian Modelling

sptm

SemiParametric Transformation Model Methods

spup

Spatial Uncertainty Propagation Analysis

spuRs

Functions and Datasets for "Introduction to Scientific Programming and Simulation Using R"

SPUTNIK

SPatially aUTomatic deNoising for Ims toolKit

SPYvsSPY

Spy vs. Spy Data

SQB

Sequential Bagging on Regression

SQDA

Sparse Quadratic Discriminant Analysis

sqldf

Manipulate R Data Frames Using SQL

sqliter

Connection wrapper to SQLite databases

SqlRender

Rendering Parameterized SQL and Translation to Dialects

sqlscore

Utilities for Generating SQL Queries from Model Objects

sqlshare

API for access to SQLShare database

sqlutils

Utilities for working with SQL files.

SQN

subset quantile normalization

SQRL

Database Query Interfaces

SQUADD

Add-on of the SQUAD Software

SQUAREM

Squared Extrapolation Methods for Accelerating EM-Like Monotone Algorithms

squash

Color-Based Plots for Multivariate Visualization

squid

Statistical Quantification of Individual Differences

sra

Selection Response Analysis

SRAdb

A compilation of metadata from NCBI SRA and tools

sRAP

Simplified RNA-Seq Analysis Pipeline

SRCS

Statistical Ranking Color Scheme for Multiple Pairwise Comparisons

sRDA

Sparse Redundancy Analysis

SRGnet

SRGnet: An R package for studying synergistic response to gene mutations from transcriptomics data from transcriptomics data

srm

Structural Equation Modeling for the Social Relations Model

SRMA

SRMA Analysis of Array-based Sequencing Data

srnadiff

Differential Expression of Small RNA-Seq

sROC

Nonparametric Smooth ROC Curves for Continuous Data

srp

Smooth-Rough Partitioning of the Regression Coefficients

SRPM

Shared Reproducibility Package Management

SRRS

The Stepwise Response Refinement Screener (SRRS)

SRTtools

Adjust Srt File to Get Better Experience when Watching Movie

srvyr

'dplyr'-Like Syntax for Summary Statistics of Survey Data

ss3sim

Fisheries Stock Assessment Simulation Testing with Stock Synthesis

ssa

Simultaneous Signal Analysis

ssanv

Sample Size Adjusted for Nonadherence or Variability of Input Parameters

SSBtools

Statistics Norway's Miscellaneous Tools

ssc

Semi-Supervised Classification Methods

sscor

Robust Correlation Estimation and Testing Based on Spatial Signs

sscore

S-Score Algorithm for Affymetrix Oligonucleotide Microarrays

sscu

Strength of Selected Codon Usage

SSDforR

Functions to Analyze Single System Data

SSDM

Stacked Species Distribution Modelling

sSDR

Tools Developed for Structured Sufficient Dimension Reduction (sSDR)

ssdtools

Species Sensitivity Distributions

sse

Sample Size Estimation

sSeq

Shrinkage estimation of dispersion in Negative Binomial models for RNA-seq experiments with small sample size

ssev

Sample Size Computation for Fixed N with Optimal Reward

ssfa

Spatial Stochastic Frontier Analysis

ssfit

Fitting of parametric models using summary statistics

ssgraph

Bayesian Graphical Estimation using Spike-and-Slab Priors

ssh

Secure Shell (SSH) Client for R

ssh.utils

Local and remote system commands with output and error capture.

ssize

Estimate Microarray Sample Size

ssize.fdr

Sample Size Calculations for Microarray Experiments

ssizeRNA

Sample Size Calculation for RNA-Seq Experimental Design

sskm

Stable Sparse K-Means

SSL

Semi-Supervised Learning

SSLASSO

The Spike-and-Slab LASSO

SSM

Fit and Analyze Smooth Supersaturated Models

ssmn

Skew Scale Mixtures of Normal Distributions

ssMousetrack

Bayesian State-Space Modeling of Mouse-Tracking Experiments via Stan

ssmrob

Robust Estimation and Inference in Sample Selection Models

ssmsn

Scale-Shape Mixtures of Skew-Normal Distributions

SSN

Spatial Modeling on Stream Networks

SSOSVM

Stream Suitable Online Support Vector Machines

SSPA

General Sample Size and Power Analysis for Microarray and Next-Generation Sequencing Data

sspir

State Space Models in R

sspline

Smoothing Splines on the Sphere

sspse

Estimating Hidden Population Size using Respondent Driven Sampling Data

SSRA

Sakai Sequential Relation Analysis

SSrat

Two-Dimensional Sociometric Status Determination with Rating Scales

ssrm.logmer

Sample Size Determination for Longitudinal Designs with Binary Outcome

SSRMST

Sample Size Calculation using Restricted Mean Survival Time

sss

Tools for Importing Files in the Triple-s (Standard Survey Structure) Format

sssc

Same Species Sample Contamination Detection

SSsimple

State space models

Sstack

Bootstrap Stacking of Random Forest Models for Heterogeneous Data

sstModel

Swiss Solvency Test (SST) Standard Models

ssvd

Sparse SVD

ssviz

A small RNA-seq visualizer and analysis toolkit

ssym

Fitting Semi-Parametric log-Symmetric Regression Models

st

Shrinkage t Statistic and Correlation-Adjusted t-Score

stab

Data Analysis for Drug Stability

stability

Stability Analysis of Genotype by Environment Interaction (GEI)

stable

Probability Functions and Generalized Regression Models for Stable Distributions

stabledist

Stable Distribution Functions

StableEstim

Estimate the Four Parameters of Stable Laws using Different Methods

stablelearner

Stability Assessment of Statistical Learning Methods

stablespec

Stable Specification Search in Structural Equation Models

stabm

Stability Measures for Feature Selection

stabreg

Linear Regression with the Stable Distribution

stabs

Stability Selection with Error Control

Stack

Stylized concatenation of data.frames or ffdfs

stackoverflow

Stack Overflow's Greatest Hits

stacomiR

Fish Migration Monitoring

stacomirtools

'ODBC' Connection Class for Package stacomiR

StagedChoiceSplineMix

Mixture of Two-Stage Logistic Regressions with Fixed Candidate Knots

stageR

stageR: stage-wise analysis of high throughput gene expression data in R

StakeholderAnalysis

Measuring Stakeholder Influence

stam

Spatio-Temporal Analysis and Modelling

StAMPP

Statistical Analysis of Mixed Ploidy Populations

stampr

Spatial Temporal Analysis of Moving Polygons

STAN

The Genomic STate ANnotation Package

STAND

Statistical Analysis of Non-Detects

standardize

Tools for Standardizing Variables for Regression in R

StandardizeText

Standardize Text

standGL

Standardized Group Lasso

StanHeaders

C++ Header Files for Stan

stapler

Simultaneous Truth and Performance Level Estimation

staplr

A Toolkit for PDF Files

STAR

Spike Train Analysis with R

staRank

Stability Ranking

StarBioTrek

StarBioTrek

staRdom

PARAFAC Analysis of EEMs from DOM

stargazer

Well-Formatted Regression and Summary Statistics Tables

starma

Modelling Space Time AutoRegressive Moving Average (STARMA) Processes

starmie

Population Structure Model Inference and Visualisation

Starr

Simple tiling array analysis of Affymetrix ChIP-chip data

stars

Spatiotemporal Arrays, Raster and Vector Data Cubes

STARSEQ

Secondary Trait Association analysis for Rare variants via SEQuence data

STARTdesign

Single to Double Arm Transition Design for Phase II Clinical Trials

startR

Automatically Retrieve Multidimensional Distributed Data Sets

STARTS

Functions for the STARTS Model

startup

Friendly R Startup Configuration

startupmsg

Utilities for Start-Up Messages

stashR

A Set of Tools for Administering SHared Repositories

STAT

Interactive Document for Working with Basic Statistical Analysis

Stat2Data

Datasets for Stat2

statar

Tools Inspired by 'Stata' to Manipulate Tabular Data

StatCharrms

Statistical Analysis of Chemistry, Histopathology, and Reproduction Endpoints Including Repeated Measures and Multi-Generation Studies

statcheck

Extract Statistics from Articles and Recompute p Values

statcomp

Statistical Complexity and Information Measures for Time Series Analysis

StatDA

Statistical Analysis for Environmental Data

StatDataML

Read and Write StatDataML Files

statebins

U.S. State Cartogram Heatmaps in R; an Alternative to Choropleth Maps for USA States

STATegRa

Classes and methods for multi-omics data integration

states

Create Panels of Independent States

statesRcontiguous

Shapefiles for the Contiguous United States of America

StateTrace

Bayesian Ordinal Analysis for State Trace Designs

statfi

statfi R tools

StatFingerprints

StatFingerprints

statGraph

Statistical Methods for Graphs

stationaRy

Get Hourly Meteorological Data from Global Stations

stationery

Working Examples for Reproducible Research Documents

statip

Statistical Functions for Probability Distributions and Regression

statisticalModeling

Functions for Teaching Statistical Modeling

StatMatch

Statistical Matching or Data Fusion

StatMeasures

Easy Data Manipulation, Data Quality and Statistical Checks

StatMethRank

Statistical Methods for Ranking Data

statmod

Statistical Modeling

statnet

Software Tools for the Statistical Analysis of Network Data

statnet.common

Common R Scripts and Utilities Used by the Statnet Project Software

statnetWeb

A Graphical User Interface for Network Modeling with 'Statnet'

statoo

Miscellaneous Basic Statistical Functions

StatPerMeCo

Statistical Performance Measures to Evaluate Covariance Matrix Estimates

statprograms

Graduate Statistics Program Datasets

statquotes

Quotes on Statistics, Data Visualization and Science

StatRank

Statistical Rank Aggregation: Inference, Evaluation, and Visualization

stats19

Work with Open Road Traffic Casualty Data from Great Britain

statsDK

A Wrapper for the API of Statistics Denmark

statsgrokse

R 'API' Binding to Stats.grok.se Server

statsguRu

Extract, Visualize and Analyze Cricket Statistics from ESPNCricinfo's Statsguru

statsr

Companion Package for Statistics with R

statTarget

Statistical Analysis of Metabolite Profile

statVisual

Statistical Visualization Tools

STB

Simultaneous Tolerance Bounds

stcm

Tools for Inference with Set-Theoretic Comparative Methods

stcos

Space-Time Change of Support

stcov

Stein's Covariance Estimator

stddiff

Calculate the Standardized Difference for Numeric, Binary and Category Variables

stdReg

Regression Standardization

stdvectors

C++ Standard Library Vectors in R

steadyICA

ICA and Tests of Independence via Multivariate Distance Covariance

steemr

A Tool for Processing Steem Data

steepness

Testing Steepness of Dominance Hierarchies

SteinerNet

Steiner Tree Approach for Graph Analysis

SteinIV

Semi-Parametric Stein-Like Estimator with Instrumental Variables

stellaR

stellar evolution tracks and isochrones

stellaRbase

A 'Stellar' Client

Stem

Spatio-temporal models in R

stemHypoxia

Differentiation of Human Embryonic Stem Cells under Hypoxia gene expression dataset by Prado-Lopez et al. (2010)

stemmatology

Stemmatological Analysis of Textual Traditions

StempCens

Spatio-Temporal Estimation and Prediction for Censored/Missing Responses

STEPCAM

ABC-SMC Inference of STEPCAM

stepNorm

Stepwise normalization functions for cDNA microarrays

stepp

Subpopulation Treatment Effect Pattern Plot (STEPP)

stepPenal

Stepwise Forward Variable Selection in Penalized Regression

stepPlr

L2 Penalized Logistic Regression with Stepwise Variable Selection

stepR

Multiscale Change-Point Inference

StepReg

Stepwise Regression Analysis

steps

Spatially- and Temporally-Explicit Population Simulator

StepSignalMargiLike

Step-Wise Signal Extraction via Marginal Likelihood

stepwise

Stepwise detection of recombination breakpoints

stepwiseCM

Stepwise Classification of Cancer Samples using High-dimensional Data Sets

StepwiseTest

Multiple Testing Method to Control Generalized Family-Wise Error Rate and False Discovery Proportion

StereoMorph

Stereo Camera Calibration and Reconstruction

stevedore

Docker Client

STI

Calculation of the Standardized Temperature Index

Stickbreaker

Fits Stickbreaking, Multiplicative and Additive Models to Data

sticky

Persist Attributes Across Data Operations

stilt

Separable Gaussian Process Interpolation (Emulation)

stima

Simultaneous Threshold Interaction Modeling Algorithm

stinepack

Stineman, a Consistently Well Behaved Method of Interpolation

stjudem

Microarray Data from Yeoh et al. in MACAT format

stlcsb

Tidy Manipulation of CSB Data for St. Louis

stlplus

Enhanced Seasonal Decomposition of Time Series by Loess

stm

Estimation of the Structural Topic Model

stmBrowser

Structural Topic Model Browser

stmCorrViz

A Tool for Structural Topic Model Visualizations

STMedianPolish

Spatio-Temporal Median Polish

stmgp

Rapid and Accurate Genetic Prediction Modeling for Genome-Wide Association or Whole-Genome Sequencing Study Data

stmgui

Shiny Application for Creating STM Models

stminsights

A 'Shiny' Application for Inspecting Structural Topic Models

StMoMo

Stochastic Mortality Modelling

StMoSim

Quantile-Quantile Plot with Several Gaussian Simulations

STMotif

Discovery of Motifs in Spatial-Time Series

stocc

Fit a Spatial Occupancy Model via Gibbs Sampling

StochaTR

Solving stochastic linear programs with a single risk constraint

stochmod

Stochastic Modeling

stochprofML

Stochastic Profiling using Maximum Likelihood Estimation

stochvol

Efficient Bayesian Inference for Stochastic Volatility (SV) Models

StockChina

Real-Time Stock Price & Volume in China Market

stockPortfolio

Build stock models and analyze stock portfolios.

stockR

Identifying Stocks in Genetic Data

stocks

Stock Market Analysis

stoichcalc

R Functions for Solving Stoichiometric Equations

STOPES

Selection Threshold Optimized Empirically via Splitting

stopwords

Multilingual Stopword Lists

Storm

Write Storm Bolts in R using the Storm Multi-Language Protocol.

stormwindmodel

Model Tropical Cyclone Wind Speeds

storr

Simple Key Value Stores

stoRy

Functions for the Analysis of Star Trek Thematic Data

stosim

Stochastic Simulator for Reliability Modeling of Repairable Systems

STPGA

Selection of Training Populations by Genetic Algorithm

stplanr

Sustainable Transport Planning

stpm

Stochastic Process Model for Analysis of Longitudinal and Time-to-Event Outcomes

stpp

Space-Time Point Pattern Simulation, Visualisation and Analysis

stppResid

Perform residual analysis on space-time point process models.

stR

STR Decomposition

STRAH

Short Tandem Repeats Analysis of Hotspot Zones

StrainRanking

Ranking of Pathogen Strains

strandCet

Estimation of Biological Parameters from Stranded Cetaceans

stranger

Simple Toolkit in R for ANomalies Get, Explain and Report

strap

Stratigraphic Tree Analysis for Palaeontology

strapgod

Resampled Data Frames

strat

An Implementation of the Stratification Index

strataG

Summaries and Population Structure Analyses of Genetic Data

stratasphere

Stratified Spherical Approximate Conditional Modeling

stratbr

Optimal Stratification in Stratified Sampling

strategicplayers

Strategic Players

Strategy

Generic Framework to Analyze Trading Strategies

stratEst

Strategy Estimation

stratification

Univariate Stratification of Survey Populations

StratifiedBalancing

Performs Stratified Covariate Balancing for Data with Discrete and Continuous Outcome Variables

StratifiedMedicine

Stratified Medicine

StratifiedRF

Builds Trees by Sampling Variables in Groups

stratifyR

Optimal Stratification of Univariate Populations

stratigraph

Toolkit for the plotting and analysis of stratigraphic and palaeontological data

StratigrapheR

Integrated Stratigraphy

StratSel

Strategic Selection Estimator

STraTUS

Enumeration and Uniform Sampling of Transmission Trees for a Known Phylogeny

stratvns

Optimal Stratification in Stratified Sampling Optimization Algorithm

straweib

Stratified Weibull Regression Model

stream

Infrastructure for Data Stream Mining

streambugs

Parametric Ordinary Differential Equations Model of Growth, Death, and Respiration of Macroinvertebrate and Algae Taxa

streamDepletr

Estimate Streamflow Depletion Due to Groundwater Pumping

Streamer

Enabling stream processing of large files

StreamingLm

What the package does (short line)

StreamMetabolism

Calculate Single Station Metabolism from Diurnal Oxygen Curves

streamMOA

Interface for MOA Stream Clustering Algorithms

streamR

Access to Twitter Streaming API via R

stremo

Functions to help the process of learning structural equation modelling

stremr

Streamlined Estimation of Survival for Static, Dynamic and Stochastic Treatment and Monitoring Regimes

stressr

Fetch and plot financial stress index and component data.

StressStrength

Computation and Estimation of Reliability of Stress-Strength Models

strex

Extra String Manipulation Functions

strider

Strided Iterator and Range

String2AdjMatrix

Creates an Adjacency Matrix from a List of Strings

stringb

Convenient Base R String Handling

STRINGdb

STRINGdb (Search Tool for the Retrieval of Interacting proteins database)

stringdist

Approximate String Matching and String Distance Functions

stringformattr

Dynamic String Formatting

stringgaussnet

PPI and Gaussian Network Construction from Transcriptomic Analysis Results Integrating a Multilevel Factor

stringi

Character String Processing Facilities

stringr

Simple, Consistent Wrappers for Common String Operations

strip

Lighten your R Model Outputs

stripless

Structured Trellis Displays Without Strips for Lattice Graphics

striprtf

Extract Text from RTF File

STRMPS

Analysis of Short Tandem Repeat (STR) Massively Parallel Sequencing (MPS) Data

STROMA4

Assign Properties to TNBC Patients

StroupGLMM

R Codes and Datasets for Generalized Linear Mixed Models: Modern Concepts, Methods and Applications by Walter W. Stroup

strptimer

An Easy Interface to Time Formatting

strucchange

Testing, Monitoring, and Dating Structural Changes

StructFDR

False Discovery Control Procedure Integrating the Prior Structure Information

StructR

Structural geology tools

structree

Tree-Structured Clustering

structSSI

Multiple Testing for Hypotheses with Hierarchical or Group Structure

strum

STRUctural Modeling of Latent Variables for General Pedigree

strvalidator

Process Control and Internal Validation of Forensic STR Kits

stsm

Structural Time Series Models

stsm.class

Class and Methods for Structural Time Series Models

stubthat

Stubbing Framework for R

studentlife

Tidy Handling and Navigation of the Student-Life Dataset

stUPscales

Spatio-Temporal Uncertainty Propagation Across Multiple Scales

STV

Single Transferable Vote Counting

StVAR

Student's t Vector Autoregression (StVAR)

styler

Non-Invasive Pretty Printing of R Code

stylo

Stylometric Multivariate Analyses

subcopem2D

Bivariate Empirical Subcopula

SubCultCon

Maximum-Likelihood Cultural Consensus Analysis with Sub-Cultures

subdetect

Detect Subgroup with an Enhanced Treatment Effect

subgroup

Methods for exploring treatment effect heterogeneity in subgroup analysis of clinical trials

subgroup.discovery

Subgroup Discovery and Bump Hunting

SubgrpID

Patient Subgroup Identification for Clinical Drug Development

SubgrPlots

Graphical Displays for Subgroup Analysis in Clinical Trials

subgxe

Combine Multiple GWAS by Using Gene-Environment Interactions

SubLasso

Gene selection using Lasso for Microarray data with user-defined genes fixed in model.

sublime

Automatic Lesion Incidence Estimation and Detection using Multi-Modality Longitudinal Magnetic Resonance Images

submax

Effect Modification in Observational Studies Using the Submax Method

subniche

Within Outlying Mean Indexes: Refining the OMI Analysis

SubpathwayLNCE

Identify Signal Subpathways Competitively Regulated by LncRNAs Based on ceRNA Theory

subplex

Unconstrained Optimization using the Subplex Algorithm

subprocess

Manage Sub-Processes in R

subrank

Computes Copula using Ranks and Subsampling

subsamp

Subsample Winner Algorithm for Variable Selection in Linear Regression with a Large Number of Variables

subscore

Computing Subscores in Classical Test Theory and Item Response Theory

subscreen

Systematic Screening of Study Data for Subgroup Effects

subselect

Selecting Variable Subsets

subsemble

An Ensemble Method for Combining Subset-Specific Algorithm Fits

subSeq

Subsampling of high-throughput sequencing count data

subspace

Interface to OpenSubspace

subspaceMOA

Interface to 'subspaceMOA'

subtee

Subgroup Treatment Effect Estimation in Clinical Trials

SubTite

Subgroup Specific Optimal Dose Assignment

subtype

Cluster analysis to find molecular subtypes and their assessment

SubVis

Visual Exploration of Protein Alignments Resulting from Multiple Substitution Matrices

suddengains

Identify Sudden Gains in Longitudinal Data

sudoku

Sudoku Puzzle Generator and Solver

sudokuAlt

Tools for Making and Spoiling Sudoku Games

sudokuplus

Sudoku Puzzle (9*9 12*12 16*16) Generator and Solver

SUE

Subsampling method

sugaR

Plots to help optimising diabetes therapy

sugarbag

Create Tessellated Hexagon Maps

sugarcanecdf

sugarcanecdf

sugarcaneprobe

Probe sequence data for microarrays of type sugarcane

sugrrants

Supporting Graphs for Analysing Time Series

sumFREGAT

Fast Region-Based Association Tests on Summary Statistics

summariser

Easy Calculation and Visualisation of Confidence Intervals

SummarizedBenchmark

Classes and methods for performing benchmark comparisons

SummarizedExperiment

SummarizedExperiment container

summarytools

Tools to Quickly and Neatly Summarize Data

SUMMER

Spatio-Temporal Under-Five Mortality Methods for Estimation

sunburstR

'Htmlwidget' for 'Kerry Rodden' 'd3.js' Sequence and 'd2b' Sunburst

suncalc

Compute Sun Position, Sunlight Phases, Moon Position and Lunar Phase

Sunclarco

Survival Analysis using Copulas

Sunder

Quantification of the effect of geographic versus environmental isolation on genetic differentiation

sundialr

An Interface to 'SUNDIALS' Ordinary Differential Equation (ODE) Solvers

SunterSampling

Sunter's sampling design

supc

The Self-Updating Process Clustering Algorithms

supclust

Supervised Clustering of Predictor Variables such as Genes

superbiclust

Generating Robust Biclusters from a Bicluster Set (Ensemble Biclustering)

superdiag

R Code for Testing Markov Chain Nonconvergence

SuperExactTest

Exact Test and Visualization of Multi-Set Intersections

SuperGauss

Superfast Likelihood Inference for Stationary Gaussian Time Series

superheat

A Graphical Tool for Exploring Complex Datasets Using Heatmaps

SuperLearner

Super Learner Prediction

superMDS

Implements the supervised multidimensional scaling (superMDS) proposal of Witten and Tibshirani (2011)

superml

Build Machine Learning Models Like Using Python's Scikit-Learn Library in R

supernova

Judd, McClelland, & Ryan Formatting for ANOVA Output

superpc

Supervised principal components

SuperPCA

Supervised Principal Component Analysis

SuperpixelImageSegmentation

Superpixel Image Segmentation

SuperRanker

Sequential Rank Agreement

supervisedPRIM

Supervised Classification Learning and Prediction using Patient Rule Induction Method (PRIM)

SupMZ

Detecting Structural Change with Heteroskedasticity

suppdata

Downloading Supplementary Data from Published Manuscripts

SuppDists

Supplementary Distributions

support

Support Points

support.BWS

Basic Functions for Supporting an Implementation of Best-Worst Scaling

support.BWS2

Basic Functions for Supporting an Implementation of Case 2 Best-Worst Scaling

support.CEs

Basic Functions for Supporting an Implementation of Choice Experiments

supportInt

Calculates Likelihood Support Intervals for Common Data Types

supraHex

supraHex: a supra-hexagonal map for analysing tabular omics data

sure

Surrogate Residuals for Ordinal and General Regression Models

surface

Fitting Hansen Models to Investigate Convergent Evolution

SurfaceTortoise

Find Optimal Sampling Locations Based on Spatial Covariate(s)

suropt

Surrogate-Based Optimization

Surrogate

Evaluation of Surrogate Endpoints in Clinical Trials

SurrogateOutcome

Estimation of the Proportion of Treatment Effect Explained by Surrogate Outcome Information

SurrogateTest

Early Testing for a Treatment Effect using Surrogate Marker Information

surrosurv

Evaluation of Failure Time Surrogate Endpoints in Individual Patient Data Meta-Analyses

suRtex

LaTeX descriptive statistic reporting for survey data

surv2sampleComp

Inference for Model-Free Between-Group Parameters for Censored Survival Data

survAccuracyMeasures

Estimate accuracy measures for risk prediction markers from survival data

survAUC

Estimators of prediction accuracy for time-to-event data.

survAWKMT2

Two-Sample Tests Based on Differences of Kaplan-Meier Curves

survBayes

Fits a proportional hazards model to time to event data by a Bayesian approach

SurvBoost

Gradient Boosting for Survival Data

survBootOutliers

Concordance Based Bootstrap Methods for Outlier Detection in Survival Analysis

survC1

C-statistics for risk prediction models with censored survival data

survClip

Survival Analysis for Pathways

survcomp

Performance Assessment and Comparison for Survival Analysis

SurvDisc

Discrete Time Survival and Longitudinal Data Analysis

surveillance

Temporal and Spatio-Temporal Modeling and Monitoring of Epidemic Phenomena

survELtest

Comparing Multiple Survival Functions with Crossing Hazards in R

survexp.fr

Relative survival, AER and SMR based on French death rates

survey

Analysis of Complex Survey Samples

surveybootstrap

Tools for the Bootstrap with Survey Data

surveydata

Tools to Work with Survey Data

surveyeditor

Generate a Survey that can be Completed by Survey Respondents

surveyoutliers

Helps Manage Outliers in Sample Surveys

surveyplanning

Survey Planning Tools

surveysd

Survey Standard Error Estimation for Cumulated Estimates and their Differences in Complex Panel Designs

Survgini

The Gini concentration test for survival data

SurvGSD

Group Sequential Design for a Clinical Trial with Censored Survival Data

survHE

Survival Analysis in Health Economic Evaluation

survIDINRI

IDI and NRI for comparing competing risk prediction models with censored survival data

survidm

Inference and Prediction in an Illness-Death Model

survival

Survival Analysis

survivalAnalysis

High-Level Interface for Survival Analysis and Associated Plots

survivalBIV

Estimation of the bivariate distribution function

survivALL

Continuous Biomarker Assessment by Exhaustive Survival Analysis

survivalMPL

Penalised Maximum Likelihood for Survival Analysis Models

survivalROC

Time-dependent ROC curve estimation from censored survival data

survivalsvm

Survival Support Vector Analysis

survJamda

Survival Prediction by Joint Analysis of Microarray Gene Expression Data

survJamda.data

survJamda.data

survminer

Drawing Survival Curves using 'ggplot2'

survMisc

Miscellaneous Functions for Survival Data

survPen

Multidimensional Penalized Splines for Survival and Net Survival Models

survPresmooth

Presmoothed Estimation in Survival Analysis

SurvRank

Rank Based Survival Modelling

survrec

Survival analysis for recurrent event data

SurvRegCensCov

Weibull Regression for a Right-Censored Endpoint with Interval-Censored Covariate

survRM2

Comparing Restricted Mean Survival Time

survRM2adapt

Flexible and Coherent Test/Estimation Procedure Based on Restricted Mean Survival Times

survsim

Simulation of Simple and Complex Survival Data

survSNP

Power Calculations for SNP Studies with Censored Outcomes

survsup

Plotting Survival Curves with Numbers at Risk Table

survtmle

Compute Targeted Minimum Loss-Based Estimates in Right-Censored Survival Settings

SurvTrunc

Analysis of Doubly Truncated Data

survutils

Utility Functions for Survival Analysis

Sushi

Tools for visualizing genomics data

sutteForecastR

Forecasting Data using Alpha-Sutte Indicator

sva

Surrogate Variable Analysis

sValues

Measures of the Sturdiness of Regression Coefficients

svapls

Surrogate variable analysis using partial least squares in a gene expression study.

SVAPLSseq

SVAPLSseq-An R package to estimate the hidden factors of unwanted variability and adjust for them to enable a more powerful and accurate differential expression analysis based on RNAseq data

svars

Data-Driven Identification of SVAR Models

svcm

2d and 3d Space-Varying Coefficient Models

svd

Interfaces to Various State-of-Art SVD and Eigensolvers

svDialogs

'SciViews' - Standard Dialog Boxes for Windows, MacOS and Linuxes

svDialogstcltk

SciViews GUI API - Dialog boxes using Tcl/Tk

svdvis

Singular Value Decomposition Visualization

svdvisual

SVD visualization tools

svenssonm

Svensson's Method

svglite

An 'SVG' Graphics Device

SVGMapping

Map experimental data on custom-made SVG file

svgPanZoom

R 'Htmlwidget' to Add Pan and Zoom to Almost any R Graphic

svGUI

SciViews - Manage GUIs in R

svgViewR

3D Animated Interactive Visualizations Using SVG

svHttp

SciViews GUI API - R HTTP server

svIDE

Functions to Ease Interactions Between R and IDE or Code Editors

svKomodo

SciViews GUI API - Functions to interface with Komodo Edit/IDE

SVM2CRM

SVM2CRM: support vector machine for cis-regulatory elements detections

SVM2CRMdata

An example dataset for use with the SVM2CRM package

svmadmm

Linear/Nonlinear SVM Classification Solver Based on ADMM and IADMM Algorithms

svMisc

SciViews - Miscellaneous Functions

SVMMaj

Implementation of the SVM-Maj Algorithm

svmpath

The SVM Path Algorithm

svmplus

Implementation of Support Vector Machines Plus (SVM+)

SVN

Statistically Validated Networks

svrpath

The SVR Path Algorithm

svs

Tools for Semantic Vector Spaces

svSocket

SciViews GUI API - R Socket Server

svSweave

SciViews GUI API - Sweave functions

svTools

Wrappers for Tools in Other Packages for IDE Friendliness

svUnit

SciViews GUI API - Unit testing

svWidgets

Management of GUI Widgets, Windows, and Other GUI Resources

svydiags

Linear Regression Model Diagnostics for Survey Data

SvyNom

Nomograms for Right-Censored Outcomes from Survey Designs

svyPVpack

A package for complex surveys including plausible values

swa

Subsampling Winner Algorithm for Classification

swagger

Dynamically Generates Documentation from a 'Swagger' Compliant API

swamp

Visualization, Analysis and Adjustment of High-Dimensional Data in Respect to Sample Annotations

swapClass

A Null Model Adapted to Abundance Class Data in Ecology

SwarmSVM

Ensemble Learning Algorithms Based on Support Vector Machines

swatches

Read, Inspect, and Manipulate Color Swatch Files

SWATH2stats

Transform and Filter SWATH Data for Statistical Packages

SwathXtend

SWATH extended library generation and statistical data analysis

SWATmodel

A multi-OS implementation of the TAMU SWAT model.

swCRTdesign

Stepped Wedge Cluster Randomized Trial (SW CRT) Design

swdft

Sliding Window Discrete Fourier Transform (SWDFT)

SweaveListingUtils

Utilities for Sweave Together with TeX 'listings' Package

sweep

Tidy Tools for Forecasting

sweidnumbr

Handling of Swedish Identity Numbers

swephR

High Precision Swiss Ephemeris

sweSCB

An R interface to the web API of Statistics Sweden

swfdr

Science-wise false discovery rate and proportion of true null hypotheses estimation

swfscMisc

Miscellaneous Functions for Southwest Fisheries Science Center

swgee

Simulation Extrapolation Inverse Probability Weighted Generalized Estimating Equations

SwimR

SwimR: A Suite of Analytical Tools for Quantification of C. elegans Swimming Behavior

swirl

Learn R, in R

swirlify

A Toolbox for Writing 'swirl' Courses

SwissAir

Air Quality Data of Switzerland for One Year in 30 Min Resolution

swissdd

Get Swiss Federal and Cantonal Vote Results from Opendata.swiss

swissMrP

Multilevel Regression with Post-Stratification (MrP) for Switzerland

switchBox

Utilities to train and validate classifiers based on pair switching using the K-Top-Scoring-Pair (KTSP) algorithm

switchde

Switch-like differential expression across single-cell trajectories

switchnpreg

Switching nonparametric regression models for a single curve and functional data

switchr

Installing, Managing, and Switching Between Distinct Sets of Installed Packages

switchrGist

Publish Package Manifests to GitHub Gists

swmmr

R Interface for US EPA's SWMM

SWMPr

Retrieving, Organizing, and Analyzing Estuary Monitoring Data

SWMPrExtension

Additional Functions for Retrieving, Organizing, and Analyzing Estuary Monitoring Data

SWordInstaller

SWord: Use R in Microsoft Word (Installer)

sybil

Efficient Constrained Based Modelling

sybilccFBA

Cost Constrained Flux Balance Analysis (ccFBA): MetabOlic Modeling with ENzyme kineTics (MOMENT)

sybilcycleFreeFlux

Cycle-Free Flux Balance Analysis

sybilDynFBA

Dynamic FBA : Dynamic Flux Balance Analysis

sybilEFBA

Using Gene Expression Data to Improve Flux Balance Analysis Predictions

sybilSBML

SBML Integration in Package 'Sybil'

sylcount

Syllable Counting and Readability Measurements

syllabifyr

Syllabifier for CMU Dictionary Transcriptions

syllable

A Small Collection of Syllable Counting Functions

sylly

Hyphenation and Syllable Counting for Text Analysis

sylly.en

Language Support for 'sylly' Package: English

sym.arma

Autoregressive and Moving Average Symmetric Models

symbolicDA

Analysis of Symbolic Data

symbols

Symbol plots

symDMatrix

Partitioned Symmetric Matrices

symmoments

Symbolic central and noncentral moments of the multivariate normal distribution

SympluR

Analyze Healthcare Social Media Data from the 'Symplur' API

SymTS

Symmetric Tempered Stable Distributions

synapter

Label-free data analysis pipeline for optimal identification and quantitation

synapterdata

Data accompanying the synapter package

synbreed

Framework for the Analysis of Genomic Prediction Data using R

synbreedData

Data for the Synbreed Package

synchronicity

Boost Mutex Functionality in R

synchrony

Methods for Computing Spatial, Temporal, and Spatiotemporal Statistics

SynchWave

Synchrosqueezed Wavelet Transform

SyncMove

Subsample Temporal Data to Synchronal Events and Compute the MCI

SyncRNG

A Synchronized Tausworthe RNG for R and Python

SYNCSA

Analysis of Functional and Phylogenetic Patterns in Metacommunities

SynergizeR

Interface to The Synergizer service for translating between sets of biological identifiers.

synergyfinder

Calculate and Visualize Synergy Scores for Drug Combinations

synergyfinder

Calculate and Visualize Synergy Scores for Drug Combinations

SyNet

Inference and Analysis of Sympatry Networks

synlet

Hits Selection for Synthetic Lethal RNAi Screen Data

synlik

Synthetic Likelihood Methods for Intractable Likelihoods

synoptReg

Synoptic Climate Classification and Spatial Regionalization of Environmental Data

synRNASeqNet

Synthetic RNA-Seq Network Generation and Mutual Information Estimates

syntaxr

An 'SPSS' Syntax Generator for Multi-Variable Manipulation

Synth

Synthetic Control Group Method for Comparative Case Studies

synthACS

Synthetic Microdata and Spatial MicroSimulation Modeling for ACS Data

synthpop

Generating Synthetic Versions of Sensitive Microdata for Statistical Disclosure Control

sys

Powerful and Reliable Tools for Running System Commands in R

sysfonts

Loading Fonts into R

sysid

System Identification in R

systemfit

Estimating Systems of Simultaneous Equations

systemfonts

System Native Font Finding

systemicrisk

A Toolbox for Systemic Risk

systemPipeR

systemPipeR: NGS workflow and report generation environment

systemPipeRdata

systemPipeRdata: NGS workflow templates and sample data

syt

Standard Young Tableaux

syuzhet

Extracts Sentiment and Sentiment-Derived Plot Arcs from Text