Damped Anderson Acceleration with Epsilon Monotonicity for Accelerating EM-Like Monotone Algorithms
Importing and Analysing SNP and Silicodart Data Generated by Genome-Wide Restriction Fragment Analysis
An R package to convert data sets for import into JAGS, WinBUGS and OpenBUGS and to generate data.frames for predicting the effects of particular variables.
A Suite of Checks for Identification of Potential Errors in a Data Frame as Part of the Data Screening Process
Data Cloud Geometry (DCG): Using Random Walks to Find Community Structure in Social Network Analysis
Differential Co-expression Analysis and Differential Regulation Analysis of Gene Expression Microarray Data
Dynamic Deterministic Effects Propagation Networks: Infer signalling networks for timecourse RPPA data.
Deconvolution density estimation with adaptive methods for a variable prone to measurement error
A tool for differential expression analysis and DEGs based investigation to complex diseases by bi-clustering analysis
Identification of Dichotomous Differential Item Functioning (DIF) using Angoff's Delta Plot Method
Calculation of Gst and D values characterizing the genetic differentiation between populations.
Annotation-agnostic differential expression analysis of RNA-seq data at base-pair resolution via the DER Finder approach
Poor prognosis colon cancer is defined by a molecularly distinct subtype and precursor lesion
DEsubs: an R package for flexible identification of differentially expressed subpathways using RNA-seq expression experiments
Implementation of the DetMCD Algorithm (Robust and Deterministic Estimation of Location and Scatter)
DEXUS - Identifying Differential Expression in RNA-Seq Studies with Unknown Conditions or without Replicates
Extrapolation and Bridging of Adult Information in Early Phase Dose-Finding Paediatrics Studies
Diagnostic Plot and Multivariate Summary Statistics of Weighted Samples from Importance Sampling
Defines some physical constants and dielectric functions commonly used in optics, plasmonics.
Fast and Scalable Learning of Sparse Changes in High-Dimensional Gaussian Graphical Model Structure
Inference and Analysis for Diffusion Processes via Data Imputation and Method of Lines
An application programming interface for generating null models of social contacts based on individuals' space use
Data-Informed Link Strength. Combine multiple-relationship networks into a single weighted network. Impute (fill-in) missing network links.
Robust Tests for Differential Dispersion and Differential Expression in RNA-Sequencing Data
DiscML: An R package for estimating evolutionary rates of discrete characters using maximum likelihood
Estimate the Gene Expression Levels and Component Proportions of the Normal, Stroma (Immune) and Tumor Components of Bulk Tumor Samples
Calculates Disproportionate Impact When Binary Success Data are Disaggregated by Subgroups
Functions for re-sampling a community matrix to compute diversity indices at different sampling levels.
Implementation of Adaptive or Non-Adaptive Differentiable Lasso and SCAD Penalties in Linear Models
Experimental data and documented source code for the paper "A Map of Directional Genetic Interactions in a Metazoan Cell"
DMRforPairs: identifying Differentially Methylated Regions between unique samples using array based methylation profiles
Delete or Merge Regressors Algorithms for Linear and Logistic Model Selection and High-Dimensional Data
Detection and inference of differentially methylated regions from Whole Genome Bisulfite Sequencing
A tool for creating and analysing DNA barcodes used in Next Generation Sequencing multiplexing experiments
Differential Exon Usage Test for RNA-Seq Data via Empirical Bayes Shrinkage of the Dispersion Parameter
Dirichlet Process Mixtures (DPM) and related models using Gaussian Graphical Models (GGM) for Sparse covariance estimation in heterogeneous samples
Synthetic Expression Data for Gene Regulatory Network Inference from the 2009 DREAM4 challenge
Regularized Estimation of Dynamic Linear Regression in the Presence of Autocorrelated Residuals (DREGAR)
Differential transcript usage and tuQTL analyses with Dirichlet-multinomial model in RNA-seq
Drug Repurposing: Integration and Systematic Investigation of Genomic High Throughput Data
Drivernet: uncovering somatic driver mutations modulating transcriptional networks in cancer
Dual Empirical Likelihood Inference under Density Ratio Models in the Presence of Multiple Samples
Dunnett-Tukey-Kramer Pairwise Multiple Comparison Test Adjusted for Unequal Variances and Unequal Sample Sizes
A Class for Working with Time Series Based on 'data.table' and 'R6' with Largely Optional Reference Semantics