Packages

A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

P2C2M

Posterior Predictive Checks of Coalescent Models

p2distance

Welfare's Synthetic Indicator

p3state.msm

Analyzing survival data

pa

Performance Attribution for Equity Portfolios

PAA

PAA (Protein Array Analyzer)

PAactivPAL

Summarize Daily Physical Activity from 'activPAL' Accelerometer Data

PabonLasso

Pabon Lasso Graphs and Comparing Situations of a Unit in Two Different Times

PAC

Partition-Assisted Clustering and Multiple Alignments of Networks

PACBO

Clustering Online Datasets

pacbpred

PAC-Bayesian Estimation and Prediction in Sparse Additive Models.

pack

Convert values to/from raw vectors

packagedocs

Build Website of Package Documentation

packagefinder

Comfortable Search for R Packages on CRAN Directly from the R Console

packageRank

Computation and Visualization of Package Download Counts and Percentiles

packagetrackr

Track R Package Downloads from RStudio's CRAN Mirror

packcircles

Circle Packing

packClassic

Toy example of Pack Classic

packdep

Mapping dependencies among R packages

packHV

A few Useful Functions for Statisticians

packMBPLSDA

Multi-Block Partial Least Squares Discriminant Analysis

packrat

A Dependency Management System for Projects and their R Package Dependencies

packS4

Toy Example of S4 Package

PACLasso

Penalized and Constrained Lasso Optimization

pacman

Package Management Tool

paco

Procrustes Application to Cophylogenetic Analysis

pacose

iPACOSE, PACOSE and other methods for covariance selection

pacotest

Testing for Partial Copulas and the Simplifying Assumption in Vine Copulas

pact

Predictive Analysis of Clinical Trials

PACVB

Variational Bayes (VB) Approximation of Gibbs Posteriors with Hinge Losses

Pade

Padé Approximant Coefficients

PADOG

Pathway Analysis with Down-weighting of Overlapping Genes (PADOG)

padr

Quickly Get Datetime Data Ready for Analysis

paeg1acdf

paeg1acdf

paeg1aprobe

Probe sequence data for microarrays of type paeg1a

paf

Attributable Fraction Function for Censored Survival Data

pafdR

Book Companion for Processing and Analyzing Financial Data with R

PAFit

Generative Mechanism Estimation in Temporal Complex Networks

pagedown

Paginate the HTML Output of R Markdown with CSS for Print

pagenum

Put Page Numbers on Graphics

pageviews

An API Client for Wikimedia Traffic Data

PAGI

The package can identify the dysregulated KEGG pathways based on global influence from the internal effect of pathways and crosstalk between pathways.

PAGWAS

Pathway Analysis Methods for Genomewide Association Data

painter

Creation and Manipulation of Color Palettes

paintmap

Plotting Paintmaps

paircompviz

Multiple comparison test visualization

pairedCI

Confidence intervals for the ratio of locations and for the ratio of scales of two paired samples

PairedData

Paired Data Analysis

pairheatmap

A tool for comparing heatmaps

pairsD3

D3 Scatterplot Matrices

PairTrading

classical pair trading based on cointegration in finance

PairViz

Visualization using Graph Traversal

pairwise

Rasch Model Parameters by Pairwise Algorithm

pairwiseCI

Confidence Intervals for Two Sample Comparisons

PairwiseD

Pairing Up Units and Vectors in Panel Data Setting

pak

Another Approach to Package Installation

PakPC2017

Pakistan Population Census 2017

PakPMICS2014Ch

Multiple Indicator Cluster Survey (MICS) 2014 Child Questionnaire Data for Punjab, Pakistan

PakPMICS2014HH

Multiple Indicator Cluster Survey (MICS) 2014 Household Questionnaire Data for Punjab, Pakistan

PakPMICS2014HL

Multiple Indicator Cluster Survey (MICS) 2014 Household Listing Questionnaire Data for Punjab, Pakistan

PakPMICS2014Wm

Multiple Indicator Cluster Survey (MICS) 2014 Women Questionnaire Data for Punjab, Pakistan

PakPMICS2018

Multiple Indicator Cluster Survey (MICS) 2017-18 Data for Punjab, Pakistan

PakPMICS2018bh

Multiple Indicator Cluster Survey (MICS) 2017-18 Birth History of Children Questionnaire Data for Punjab, Pakistan

PakPMICS2018fs

Multiple Indicator Cluster Survey (MICS) 2017-18 Children Age 5-17 Questionnaire Data for Punjab, Pakistan

PakPMICS2018hh

Multiple Indicator Cluster Survey (MICS) 2017-18 Household Questionnaire Data for Punjab, Pakistan

PakPMICS2018mm

Multiple Indicator Cluster Survey (MICS) 2017-18 Maternal Mortality Questionnaire Data for Punjab, Pakistan

PakPMICS2018mn

Multiple Indicator Cluster Survey (MICS) 2017-18 Men Questionnaire Data for Punjab, Pakistan

palaeoSig

Significance Tests for Palaeoenvironmental Reconstructions

palasso

Paired Lasso Regression

paleobioDB

Download and Process Data from the Paleobiology Database

paleofire

Analysis of Charcoal Records from the Global Charcoal Database

paleoMAS

Paleoecological Analysis

paleomorph

Geometric Morphometric Tools for Paleobiology

paleotree

Paleontological and Phylogenetic Analyses of Evolution

paleoTS

Analyze Paleontological Time-Series

paletteer

Comprehensive Collection of Color Palettes

palettesForR

GPL Palettes Copied from 'Gimp' and 'Inkscape'

palettetown

Use Pokemon Inspired Colour Palettes

palinsol

Insolation for Palaeoclimate Studies

palm

Fitting Point Process Models via the Palm Likelihood

palmtree

Partially Additive (Generalized) Linear Model Trees

paloma

Poisson Approximation for LOcal Motif Assessment

palr

Colour Palettes for Data

pals

Color Palettes, Colormaps, and Tools to Evaluate Them

pamctdp

Principal Axes Methods for Contingency Tables with Partition Structures on Rows and Columns

PAmeasures

Prediction and Accuracy Measures for Nonlinear Models and for Right-Censored Time-to-Event Data

PamGeneMixed

Preprocessing and Modeling Kinase Activity Profiles in PamChip Data

pamm

Power Analysis for Random Effects in Mixed Models

pammtools

Piece-Wise Exponential Additive Mixed Modeling Tools

pampe

Implementation of the Panel Data Approach Method for Program Evaluation

pamr

Pam: Prediction Analysis for Microarrays

pan

Multiple Imputation for Multivariate Panel or Clustered Data

pAnalysis

Benchmarking and Rescaling R2 using Noise Percentile Analysis

PANDA

Preferential Attachment Based Common Neighbor Distribution Derived Functional Associations

pandaR

PANDA Algorithm

pander

An R 'Pandoc' Writer

pandocfilters

Pandoc Filters for R

panelaggregation

Aggregate Longitudinal Survey Data

panelAR

Estimation of Linear AR(1) Panel Data Models with Cross-Sectional Heteroskedasticity and/or Correlation

panelcn.mops

CNV detection tool for targeted NGS panel data

PanelCount

Random Effects and/or Sample Selection Models for Panel Count Data

Paneldata

Linear models for panel data

panelr

Regression Models and Utilities for Repeated Measures and Panel Data

panelvar

Panel Vector Autoregression

panelView

Visualizing Panel Data

pangaear

Client for the 'Pangaea' Database

PANICr

PANIC Tests of Nonstationarity

PanJen

A Semi-Parametric Test for Specifying Functional Form

PAnnBuilder

Protein annotation data package builder

panp

Presence-Absence Calls from Negative Strand Matching Probesets

PANR

Posterior association networks and functional modules inferred from rich phenotypes of gene perturbations

PANTHER.db

A set of annotation maps describing the entire PANTHER Gene Ontology

PanVizGenerator

Generate PanViz visualisations from your pangenome

papayar

View Medical Research Images using the Papaya JavaScript Library

papeR

A Toolbox for Writing Pretty Papers and Reports

paperplanes

Distance Recordings from a Paper Plane Folding/Flying Experiment

PAPi

Predict metabolic pathway activity based on metabolomics data

parallelDist

Parallel Distance Matrix Computation using Multiple Threads

ParallelForest

Random Forest Classification with Parallel Computing

parallelize.dynamic

Automate parallelization of function calls by means of dynamic code analysis

ParallelLogger

Support for Parallel Computation, Logging, and Function Automation

parallelMap

Unified Interface to Parallelization Back-Ends

parallelMCMCcombine

Methods for combining independent subset Markov chain Monte Carlo (MCMC) posterior samples to estimate a posterior density given the full data set

parallelML

A Parallel-Voting Algorithm for many Classifiers

ParallelPC

Paralellised Versions of Constraint Based Causal Discovery Algorithms

parallelSVM

A Parallel-Voting Version of the Support-Vector-Machine Algorithm

ParallelTree

Parallel Tree

paramGUI

A Shiny GUI for some Parameter Estimation Examples

ParamHelpers

Helpers for Parameters in Black-Box Optimization, Tuning and Machine Learning

paramhetero

Numeric and Visual Comparisons of Heterogeneity in Parametric Models

paramlink

Parametric Linkage and Other Pedigree Analysis in R

params

Simplify Parameters

paramtest

Run a Function Iteratively While Varying Parameters

paran

Horn's Test of Principal Components/Factors

parathyroidSE

RangedSummarizedExperiment for RNA-Seq of primary cultures of parathyroid tumors by Haglund et al., J Clin Endocrinol Metab 2012.

ParBayesianOptimization

Parallel Bayesian Optimization of Hyperparameters

parboost

Distributed Model-Based Boosting

parcoords

'Htmlwidget' for 'd3.js' Parallel Coordinates Chart

parcor

Regularized estimation of partial correlation matrices

ParDNAcopy

Parallel implementation of the "segment" function of package "DNAcopy"

ParentOffspring

Conduct the Parent-Offspring Test Using Monomorphic SNP Markers

ParetoPosStable

Computing, Fitting and Validating the PPS Distribution

parfm

Parametric Frailty Models

parfossil

Parallelized functions for palaeoecological and palaeogeographical analysis

parglm

Parallel GLM

parglms

support for parallelized estimation of GLMs/GEEs

parlitools

Tools for Analysing UK Politics

parma

Portfolio Allocation and Risk Management Applications

parmigene

Parallel Mutual Information estimation for Gene Network reconstruction.

parmsurvfit

Parametric Models for Survival Data

parody

Parametric And Resistant Outlier DYtection

PARSE

Model-Based Clustering with Regularization Methods for High-Dimensional Data

parsec

Partial Orders in Socio-Economics

parsedate

Recognize and Parse Dates in Various Formats, Including All ISO 8601 Formats

parsemsf

Parse ThermoFisher MSF Files and Estimate Protein Abundances

parser

Detailed R source code parser

parsetools

Parse Tools

parSim

Parallel Simulation Studies

parsnip

A Common API to Modeling and Analysis Functions

parspatstat

Parallel spatial statistics

PartCensReg

Estimation and Diagnostics for Partially Linear Censored Regression Models Based on Heavy-Tailed Distributions

partDSA

Partitioning Using Deletion, Substitution, and Addition Moves

PartheenMetaData.db

PartheenMetaData http://swegene.onk.lu.se Annotation Data (PartheenMetaData)

partialAR

Partial Autoregression

partialCI

Partial Cointegration

Partiallyoverlapping

Partially Overlapping Samples Tests

partialOR

Partial Odds Ratio

particles

A Graph Based Particle Simulator Based on D3-Force

partition

Agglomerative Partitioning Framework for Dimension Reduction

partitionComparison

Implements Measures for the Comparison of Two Partitions

partitionMap

Partition Maps

partitionMetric

Compute a distance metric between two partitions of a set

partitions

Additive Partitions of Integers

partools

Tools for the 'Parallel' Package

partsm

Periodic Autoregressive Time Series Models

party

A Laboratory for Recursive Partytioning

partykit

A Toolkit for Recursive Partytioning

parviol

Parviol

PAS

Polygenic Analysis System (PAS)

PASenseWear

Summarize Daily Physical Activity from 'SenseWear' Accelerometer Data

Pasha

Preprocessing of Aligned Sequences from HTS Analyses

pasilla

Data package with per-exon and per-gene read counts of RNA-seq samples of Pasilla knock-down by Brooks et al., Genome Research 2011.

pasillaBamSubset

Subset of BAM files from "Pasilla" experiment

PasillaTranscriptExpr

Data package with transcript expression obtained with kallisto from pasilla knock-down RNA-Seq data from Brooks et al.

pass

Prediction and Stability Selection of Tuning Parameters

passport

Travel Smoothly Between Country Name and Code Formats

password

Create Random Passwords

pasta

Noodlyfied Pasting of Strings

pastecs

Package for Analysis of Space-Time Ecological Series

pastis

Phylogenetic Assembly with Soft Taxonomic Inferences

PASWR

PROBABILITY and STATISTICS WITH R

PASWR2

Probability and Statistics with R, Second Edition

patchDVI

Package to Patch .dvi or .synctex Files

patchPlot

Scatterplots of image patches

patchSynctex

Communication Between Editor and Viewer for Literate Programs

patentsview

An R Client to the 'PatentsView' API

Path2PPI

Prediction of pathway-related protein-protein interaction networks

PATHChange

A Tool for Identification of Differentially Expressed Pathways using Multi-Statistic Comparison

pathClass

Classification using biological pathways as prior knowledge

pathdiagram

Basic functions for drawing path diagrams

pathfindR

Pathway Enrichment Analysis Utilizing Active Subnetworks

pathifier

Quantify deregulation of pathways in cancer

pathlibr

OO Path Manipulation in R

pathmapping

Compute Deviation and Correspondence Between Spatial Paths

pathmox

Pathmox Approach of Segmentation Trees in Partial Least Squares Path Modeling

PathNet

An R package for pathway analysis using topological information

PathNetData

Experimental data for the PathNet package

pathological

Path Manipulation Utilities

PathoStat

PathoStat Statistical Microbiome Analysis Package

pathprint

Pathway fingerprinting for analysis of gene expression arrays

pathprintGEOData

Pathway fingerprint vectors representing a subsection of arrays from the GEO data repository

pathRender

Render molecular pathways

PathSelectMP

Backwards Variable Selection for Paths using M Plus

pathVar

Methods to Find Pathways with Significantly Different Variability

pathview

a tool set for pathway based data integration and visualization

PathwaySplice

An R Package for Unbiased Splicing Pathway Analysis

patPRO

Visualizing Temporal Microbiome Data

patrick

Parameterized Unit Testing

patternator

Feature Extraction from Female Brown Anole Lizard Dorsal Patterns

PatternClass

Class-Focused Pattern Metric Comparisons using Simulation

patternize

Quantification of Color Pattern Variation

patternplot

Versatile Pie Charts, Bar Charts and Box Plots using Patterns, Colors and Images

Patterns

Deciphering Biological Networks with Patterned Heterogeneous Measurements

PAutilities

Streamline Physical Activity Research

pauwels2014

Bayesian Experimental Design for Systems Biology.

pavo

Perceptual Analysis, Visualization and Organization of Spectral Colour Data in R

pawacc

Physical Activity with Accelerometers

PAWL

Implementation of the PAWL algorithm

pawls

Penalized Adaptive Weighted Least Squares Regression

paws

Amazon Web Services Software Development Kit

paws.analytics

Amazon Web Services Analytics APIs

paws.application.integration

Amazon Web Services Application Integration APIs

paws.common

Paws Low-Level Amazon Web Services API

paws.compute

Amazon Web Services Compute APIs

paws.cost.management

Amazon Web Services Cost Management APIs

paws.customer.engagement

Amazon Web Services Customer Engagement APIs

paws.database

Amazon Web Services Database APIs

paws.machine.learning

Amazon Web Services Machine Learning APIs

paws.management

Amazon Web Services Management & Governance APIs

paws.networking

Amazon Web Services Networking & Content Delivery APIs

paws.security.identity

Amazon Web Services Security, Identity, & Compliance APIs

paws.storage

Amazon Web Services Storage APIs

paxtoolsr

PaxtoolsR: Access Pathways from Multiple Databases through BioPAX and Pathway Commons

pbapply

Adding Progress Bar to '*apply' Functions

Pbase

Manipulating and exploring protein and proteomics data

pbatR

Pedigree/Family-Based Genetic Association Tests Analysis and Power

PBC

Product of Bivariate Copulas (PBC)

pbcmc

Permutation-Based Confidence for Molecular Classification

PBD

Protracted Birth-Death Model of Diversification

pbdBASE

Programming with Big Data -- Base Wrappers for Distributed Matrices

pbdDEMO

Programming with Big Data -- Demonstrations and Examples Using 'pbdR' Packages

pbdDMAT

'pbdR' Distributed Matrix Methods

pbdMPI

Programming with Big Data -- Interface to MPI

pbdNCDF4

Programming with Big Data -- Interface to Parallel Unidata NetCDF4 Format Data Files

pbdPROF

Programming with Big Data --- MPI Profiling Tools

pbdRPC

Programming with Big Data -- Remote Procedure Call

pbdSLAP

Programming with Big Data -- Scalable Linear Algebra Packages

pbdZMQ

Programming with Big Data -- Interface to 'ZeroMQ'

PBIBD

Partially Balanced Incomplete Block Designs

PBImisc

A Set of Datasets Used in My Classes or in the Book 'Modele Liniowe i Mieszane w R, Wraz z Przykladami w Analizie Danych'

pbivnorm

Vectorized Bivariate Normal CDF

pbkrtest

Parametric Bootstrap and Kenward Roger Based Methods for Mixed Model Comparison

pbm

Protein Binding Models

pbmcapply

Tracking the Progress of Mc*pply with Progress Bar

PBNPA

Permutation Based Non-Parametric Analysis of CRISPR Screen Data

pbo

Probability of Backtest Overfitting

pBrackets

Plot Brackets

PBRF

The Probability of Being in Response Function and Its Variance Estimates

pbs

Periodic B Splines

PBSadmb

ADMB for R Using Scripts or GUI

PBSddesolve

Solver for Delay Differential Equations

PBSmapping

Mapping Fisheries Data and Spatial Analysis Tools

PBSmodelling

GUI Tools Made Easy: Interact with Models and Explore Data

pbv

Probabilities for Bivariate Normal Distribution

pca3d

Three Dimensional PCA Plots

PCA4TS

Segmenting Multiple Time Series by Contemporaneous Linear Transformation

PCA4you

PCA Plotting in a User Friendly Way

pcaBootPlot

Create 2D Principal Component Plots with Bootstrapping

pcadapt

Fast Principal Component Analysis for Outlier Detection

PCADSC

Tools for Principal Component Analysis-Based Data Structure Comparisons

pcaExplorer

Interactive Visualization of RNA-seq Data Using a Principal Components Approach

pcaGoPromoter

pcaGoPromoter is used to analyze DNA micro array data

pcaGoPromoter.Hs.hg19

pcaGoPromoter.Hs.hg19 is a data package used by pcaGoPromoter

pcaGoPromoter.Mm.mm9

pcaGoPromoter.Mm.mm9 is a data package used by pcaGoPromoter

pcaGoPromoter.Rn.rn4

pcaGoPromoter.Rn.rn4 is a data package used by pcaGoPromoter

pcaL1

L1-Norm PCA Methods

pcalg

Methods for Graphical Models and Causal Inference

pCalibrate

Bayesian Calibrations of P-Values

pcaMethods

A collection of PCA methods

PCAmixdata

Multivariate Analysis of Mixed Data

PCAN

Phenotype Consensus ANalysis (PCAN)

pcaPA

Parallel Analysis for Ordinal and Numeric Data using Polychoric and Pearson Correlations with S3 Classes

pcaPP

Robust PCA by Projection Pursuit

pccc

Pediatric Complex Chronic Conditions

PCDimension

Finding the Number of Significant Principal Components

pcdpca

Dynamic Principal Components for Periodically Correlated Functional Time Series

PCDSpline

Semiparametric regression analysis of panel count data using monotone splines

pcensmix

Model Fitting to Progressively Censored Mixture Data

pcenum

Permutations and Combinations Enumeration

pcev

Principal Component of Explained Variance

pcFactorStan

Stan Models for the Pairwise Comparison Factor Model

PCFAM

Computation of Ancestry Scores with Mixed Families and Unrelated Individuals

pcg

Preconditioned Conjugate Gradient Algorithm for solving Ax=b

pcgen

Reconstruction of Causal Networks for Data with Random Genetic Effects

PCGSE

Principal Component Gene Set Enrichment

pch

Piecewise Constant Hazards Models for Censored and Truncated Data

PCHiCdata

Promoter Capture Hi-C data

PCICt

Implementation of POSIXct Work-Alike for 365 and 360 Day Calendars

pcIRT

IRT Models for Polytomous and Continuous Item Responses

PCIT

Partial Correlation Coefficient with Information Theory

pcLasso

Principal Components Lasso

pcmabc

Approximate Bayesian Computations for Phylogenetic Comparative Methods

PCMBase

Simulation and Likelihood Calculation of Phylogenetic Comparative Models

PCMRS

Model Response Styles in Partial Credit Models

pcnetmeta

Patient-Centered Network Meta-Analysis

pco

Panel Cointegration Tests

pcot2

Principal Coordinates and Hotelling's T-Square method

PCovR

Principal Covariates Regression

PCpheno

Phenotypes and cellular organizational units

PCPS

Principal Coordinates of Phylogenetic Structure

pcr

Analyzing Real-Time Quantitative PCR Data

pcrcoal

Implementing the Coalescent Approach to PCR Simulation Developed by Weiss and Von Haeseler (NAR, 1997)

PCRedux

Quantitative Polymerase Chain Reaction (qPCR) Data Mining and Machine Learning Helper Tool

pcrsim

Simulation of the Forensic DNA Process

PCS

Calculate the probability of correct selection (PCS)

pcse

Panel-Corrected Standard Error Estimation in R

PCSinR

Parallel Constraint Satisfaction Networks in R

pct

Propensity to Cycle Tool

pcurve

Principal curve analysis

pcxn

Exploring, analyzing and visualizing functions utilizing the pcxnData package

pcxnData

Correlation coefficients and p values between pre-defined pathway/gene sets

pd.081229.hg18.promoter.medip.hx1

Platform Design Info for NimbleGen 081229_hg18_promoter_medip_hx1

pd.2006.07.18.hg18.refseq.promoter

Platform Design Info for NimbleGen 2006-07-18_hg18_refseq_promoter

pd.2006.07.18.mm8.refseq.promoter

Platform Design Info for NimbleGen 2006-07-18_mm8_refseq_promoter

pd.2006.10.31.rn34.refseq.promoter

Platform Design Info for NimbleGen 2006-10-31_rn34_refseq_promoter

pd.ag

Platform Design Info for The Manufacturer's Name AG

pd.aragene.1.0.st

Platform Design Info for Affymetrix AraGene-1_0-st

pd.aragene.1.1.st

Platform Design Info for Affymetrix AraGene-1_1-st

pd.atdschip.tiling

Platform Design Info for Affymetrix Atdschip_tiling

pd.ath1.121501

Platform Design Info for The Manufacturer's Name ATH1-121501

pd.barley1

Platform Design Info for The Manufacturer's Name Barley1

pd.bovgene.1.0.st

Platform Design Info for Affymetrix BovGene-1_0-st

pd.bovgene.1.1.st

Platform Design Info for Affymetrix BovGene-1_1-st

pd.bovine

Platform Design Info for The Manufacturer's Name Bovine

pd.bsubtilis

Platform Design Info for The Manufacturer's Name Bsubtilis

pd.cangene.1.0.st

Platform Design Info for Affymetrix CanGene-1_0-st

pd.cangene.1.1.st

Platform Design Info for Affymetrix CanGene-1_1-st

pd.canine

Platform Design Info for The Manufacturer's Name Canine

pd.canine.2

Platform Design Info for The Manufacturer's Name Canine_2

pd.celegans

Platform Design Info for The Manufacturer's Name Celegans

pd.charm.hg18.example

Platform Design Info for NimbleGen charm_hg18_example

pd.chicken

Platform Design Info for The Manufacturer's Name Chicken

pd.chigene.1.0.st

Platform Design Info for Affymetrix ChiGene-1_0-st

pd.chigene.1.1.st

Platform Design Info for Affymetrix ChiGene-1_1-st

pd.chogene.2.0.st

Platform Design Info for Affymetrix CHOGene-2_0-st

pd.chogene.2.1.st

Platform Design Info for Affymetrix CHOGene-2_1-st

pd.citrus

Platform Design Info for The Manufacturer's Name Citrus

pd.clariom.d.human

Platform Design Info for Affymetrix Clariom_D_Human

pd.clariom.s.human

Platform Design Info for Affymetrix Clariom_S_Human

pd.clariom.s.human.ht

Platform Design Info for Affymetrix Clariom_S_Human_HT

pd.clariom.s.mouse

Platform Design Info for Affymetrix Clariom_S_Mouse

pd.clariom.s.mouse.ht

Platform Design Info for Affymetrix Clariom_S_Mouse_HT

pd.clariom.s.rat

Platform Design Info for Affymetrix Clariom_S_Rat

pd.clariom.s.rat.ht

Platform Design Info for Affymetrix Clariom_S_Rat_HT

pd.cotton

Platform Design Info for The Manufacturer's Name Cotton

pd.cyngene.1.0.st

Platform Design Info for Affymetrix CynGene-1_0-st

pd.cyngene.1.1.st

Platform Design Info for Affymetrix CynGene-1_1-st

pd.cyrgene.1.0.st

Platform Design Info for Affymetrix CyRGene-1_0-st

pd.cyrgene.1.1.st

Platform Design Info for Affymetrix CyRGene-1_1-st

pd.cytogenetics.array

Platform Design Info for Affymetrix Cytogenetics_Array

pd.drogene.1.0.st

Platform Design Info for Affymetrix DroGene-1_0-st

pd.drogene.1.1.st

Platform Design Info for Affymetrix DroGene-1_1-st

pd.drosgenome1

Platform Design Info for The Manufacturer's Name DrosGenome1

pd.drosophila.2

Platform Design Info for The Manufacturer's Name Drosophila_2

pd.e.coli.2

Platform Design Info for The Manufacturer's Name E_coli_2

pd.ecoli

Platform Design Info for The Manufacturer's Name Ecoli

pd.ecoli.asv2

Platform Design Info for The Manufacturer's Name Ecoli_ASv2

pd.elegene.1.0.st

Platform Design Info for Affymetrix EleGene-1_0-st

pd.elegene.1.1.st

Platform Design Info for Affymetrix EleGene-1_1-st

pd.equgene.1.0.st

Platform Design Info for Affymetrix EquGene-1_0-st

pd.equgene.1.1.st

Platform Design Info for Affymetrix EquGene-1_1-st

pd.feinberg.hg18.me.hx1

Platform Design Info for NimbleGen feinberg_hg18_me_hx1

pd.feinberg.mm8.me.hx1

Platform Design Info for NimbleGen feinberg_mm8_me_hx1

pd.felgene.1.0.st

Platform Design Info for Affymetrix FelGene-1_0-st

pd.felgene.1.1.st

Platform Design Info for Affymetrix FelGene-1_1-st

pd.fingene.1.0.st

Platform Design Info for Affymetrix FinGene-1_0-st

pd.fingene.1.1.st

Platform Design Info for Affymetrix FinGene-1_1-st

pd.genomewidesnp.5

Platform Design Info for Affymetrix GenomeWideSNP_5

pd.genomewidesnp.6

Platform Design Info for Affymetrix GenomeWideSNP_6

pd.guigene.1.0.st

Platform Design Info for Affymetrix GuiGene-1_0-st

pd.guigene.1.1.st

Platform Design Info for Affymetrix GuiGene-1_1-st

pd.hc.g110

Platform Design Info for The Manufacturer's Name HC_G110

pd.hg.focus

Platform Design Info for The Manufacturer's Name HG-Focus

pd.hg.u133.plus.2

Platform Design Info for The Manufacturer's Name HG-U133_Plus_2

pd.hg.u133a

Platform Design Info for The Manufacturer's Name HG-U133A

pd.hg.u133a.2

Platform Design Info for The Manufacturer's Name HG-U133A_2

pd.hg.u133a.tag

Platform Design Info for The Manufacturer's Name HG-U133A_tag

pd.hg.u133b

Platform Design Info for The Manufacturer's Name HG-U133B

pd.hg.u219

Platform Design Info for The Manufacturer's Name HG-U219

pd.hg.u95a

Platform Design Info for The Manufacturer's Name HG_U95A

pd.hg.u95av2

Platform Design Info for The Manufacturer's Name HG_U95Av2

pd.hg.u95b

Platform Design Info for The Manufacturer's Name HG_U95B

pd.hg.u95c

Platform Design Info for The Manufacturer's Name HG_U95C

pd.hg.u95d

Platform Design Info for The Manufacturer's Name HG_U95D

pd.hg.u95e

Platform Design Info for The Manufacturer's Name HG_U95E

pd.hg18.60mer.expr

Platform Design Info for NimbleGen hg18_60mer_expr

pd.ht.hg.u133.plus.pm

Platform Design Info for The Manufacturer's Name HT_HG-U133_Plus_PM

pd.ht.hg.u133a

Platform Design Info for The Manufacturer's Name HT_HG-U133A

pd.ht.mg.430a

Platform Design Info for The Manufacturer's Name HT_MG-430A

pd.hta.2.0

Platform Design Info for Affymetrix HTA-2_0

pd.hu6800

Platform Design Info for The Manufacturer's Name Hu6800

pd.huex.1.0.st.v2

Platform Design Info for Affymetrix HuEx-1_0-st-v2

pd.hugene.1.0.st.v1

Platform Design Info for Affymetrix HuGene-1_0-st-v1

pd.hugene.1.1.st.v1

Platform Design Info for Affymetrix HuGene-1_1-st-v1

pd.hugene.2.0.st

Platform Design Info for Affymetrix HuGene-2_0-st

pd.hugene.2.1.st

Platform Design Info for Affymetrix HuGene-2_1-st

pd.maize

Platform Design Info for The Manufacturer's Name Maize

pd.mapping250k.nsp

Platform Design Info for Affymetrix Mapping250K_Nsp

pd.mapping250k.sty

Platform Design Info for Affymetrix Mapping250K_Sty

pd.mapping50k.hind240

Platform Design Info for Affymetrix Mapping50K_Hind240

pd.mapping50k.xba240

Platform Design Info for Affymetrix Mapping50K_Xba240

pd.margene.1.0.st

Platform Design Info for Affymetrix MarGene-1_0-st

pd.margene.1.1.st

Platform Design Info for Affymetrix MarGene-1_1-st

pd.medgene.1.0.st

Platform Design Info for Affymetrix MedGene-1_0-st

pd.medgene.1.1.st

Platform Design Info for Affymetrix MedGene-1_1-st

pd.medicago

Platform Design Info for The Manufacturer's Name Medicago

pd.mg.u74a

Platform Design Info for The Manufacturer's Name MG_U74A

pd.mg.u74av2

Platform Design Info for The Manufacturer's Name MG_U74Av2

pd.mg.u74b

Platform Design Info for The Manufacturer's Name MG_U74B

pd.mg.u74bv2

Platform Design Info for The Manufacturer's Name MG_U74Bv2

pd.mg.u74c

Platform Design Info for The Manufacturer's Name MG_U74C

pd.mg.u74cv2

Platform Design Info for The Manufacturer's Name MG_U74Cv2

pd.mirna.1.0

Platform Design Info for The Manufacturer's Name miRNA-1_0

pd.mirna.2.0

Platform Design Info for Affymetrix miRNA-2_0

pd.mirna.3.0

Platform Design Info for Affymetrix miRNA-3_0

pd.mirna.3.1

Platform Design Info for Affymetrix miRNA-3_1

pd.mirna.4.0

Platform Design Info for Affymetrix miRNA-4_0

pd.moe430a

Platform Design Info for The Manufacturer's Name MOE430A

pd.moe430b

Platform Design Info for The Manufacturer's Name MOE430B

pd.moex.1.0.st.v1

Platform Design Info for Affymetrix MoEx-1_0-st-v1

pd.mogene.1.0.st.v1

Platform Design Info for Affymetrix MoGene-1_0-st-v1

pd.mogene.1.1.st.v1

Platform Design Info for Affymetrix MoGene-1_1-st-v1

pd.mogene.2.0.st

Platform Design Info for Affymetrix MoGene-2_0-st

pd.mogene.2.1.st

Platform Design Info for Affymetrix MoGene-2_1-st

pd.mouse430.2

Platform Design Info for The Manufacturer's Name Mouse430_2

pd.mouse430a.2

Platform Design Info for The Manufacturer's Name Mouse430A_2

pd.mta.1.0

Platform Design Info for Affymetrix MTA-1_0

pd.mu11ksuba

Platform Design Info for The Manufacturer's Name Mu11KsubA

pd.mu11ksubb

Platform Design Info for The Manufacturer's Name Mu11KsubB

pd.nugo.hs1a520180

Platform Design Info for The Manufacturer's Name NuGO_Hs1a520180

pd.nugo.mm1a520177

Platform Design Info for The Manufacturer's Name NuGO_Mm1a520177

pd.ovigene.1.0.st

Platform Design Info for Affymetrix OviGene-1_0-st

pd.ovigene.1.1.st

Platform Design Info for Affymetrix OviGene-1_1-st

pd.pae.g1a

Platform Design Info for The Manufacturer's Name Pae_G1a

pd.plasmodium.anopheles

Platform Design Info for The Manufacturer's Name Plasmodium_Anopheles

pd.poplar

Platform Design Info for The Manufacturer's Name Poplar

pd.porcine

Platform Design Info for The Manufacturer's Name Porcine

pd.porgene.1.0.st

Platform Design Info for Affymetrix PorGene-1_0-st

pd.porgene.1.1.st

Platform Design Info for Affymetrix PorGene-1_1-st

pd.rabgene.1.0.st

Platform Design Info for Affymetrix RabGene-1_0-st

pd.rabgene.1.1.st

Platform Design Info for Affymetrix RabGene-1_1-st

pd.rae230a

Platform Design Info for The Manufacturer's Name RAE230A

pd.rae230b

Platform Design Info for The Manufacturer's Name RAE230B

pd.raex.1.0.st.v1

Platform Design Info for Affymetrix RaEx-1_0-st-v1

pd.ragene.1.0.st.v1

Platform Design Info for Affymetrix RaGene-1_0-st-v1

pd.ragene.1.1.st.v1

Platform Design Info for Affymetrix RaGene-1_1-st-v1

pd.ragene.2.0.st

Platform Design Info for Affymetrix RaGene-2_0-st

pd.ragene.2.1.st

Platform Design Info for Affymetrix RaGene-2_1-st

pd.rat230.2

Platform Design Info for The Manufacturer's Name Rat230_2

pd.rcngene.1.0.st

Platform Design Info for Affymetrix RCnGene-1_0-st

pd.rcngene.1.1.st

Platform Design Info for Affymetrix RCnGene-1_1-st

pd.rg.u34a

Platform Design Info for The Manufacturer's Name RG_U34A

pd.rg.u34b

Platform Design Info for The Manufacturer's Name RG_U34B

pd.rg.u34c

Platform Design Info for The Manufacturer's Name RG_U34C

pd.rhegene.1.0.st

Platform Design Info for Affymetrix RheGene-1_0-st

pd.rhegene.1.1.st

Platform Design Info for Affymetrix RheGene-1_1-st

pd.rhesus

Platform Design Info for The Manufacturer's Name Rhesus

pd.rice

Platform Design Info for The Manufacturer's Name Rice

pd.rjpgene.1.0.st

Platform Design Info for Affymetrix RJpGene-1_0-st

pd.rjpgene.1.1.st

Platform Design Info for Affymetrix RJpGene-1_1-st

pd.rn.u34

Platform Design Info for The Manufacturer's Name RN_U34

pd.rta.1.0

Platform Design Info for Affymetrix RTA-1_0

pd.rusgene.1.0.st

Platform Design Info for Affymetrix RUSGene-1_0-st

pd.rusgene.1.1.st

Platform Design Info for Affymetrix RUSGene-1_1-st

pd.s.aureus

Platform Design Info for The Manufacturer's Name S_aureus

pd.soybean

Platform Design Info for The Manufacturer's Name Soybean

pd.soygene.1.0.st

Platform Design Info for Affymetrix SoyGene-1_0-st

pd.soygene.1.1.st

Platform Design Info for Affymetrix SoyGene-1_1-st

pd.sugar.cane

Platform Design Info for The Manufacturer's Name Sugar_Cane

pd.tomato

Platform Design Info for The Manufacturer's Name Tomato

pd.u133.x3p

Platform Design Info for The Manufacturer's Name U133_X3P

pd.vitis.vinifera

Platform Design Info for The Manufacturer's Name Vitis_Vinifera

pd.wheat

Platform Design Info for The Manufacturer's Name wheat

pd.x.laevis.2

Platform Design Info for The Manufacturer's Name X_laevis_2

pd.x.tropicalis

Platform Design Info for The Manufacturer's Name X_tropicalis

pd.xenopus.laevis

Platform Design Info for The Manufacturer's Name Xenopus_laevis

pd.yeast.2

Platform Design Info for The Manufacturer's Name Yeast_2

pd.yg.s98

Platform Design Info for The Manufacturer's Name YG_S98

pd.zebgene.1.0.st

Platform Design Info for Affymetrix ZebGene-1_0-st

pd.zebgene.1.1.st

Platform Design Info for Affymetrix ZebGene-1_1-st

pd.zebrafish

Platform Design Info for The Manufacturer's Name Zebrafish

pdc

Permutation Distribution Clustering

pder

Panel Data Econometrics with R

pdfCluster

Cluster Analysis via Nonparametric Density Estimation

PDFEstimator

Nonparametric Probability Density Estimator

pdfetch

Fetch Economic and Financial Time Series Data from Public Sources

pdfsearch

Search Tools for PDF Files

pdftables

Programmatic Conversion of PDF Tables

pdftools

Text Extraction, Rendering and Converting of PDF Documents

pdInfoBuilder

Platform Design Information Package Builder

pdist

Partitioned Distance Function

PDM

Photogrammetric Distances Measurer

pdmclass

Classification of Microarray Samples using Penalized Discriminant Methods

pdmod

Proximal/Distal Modeling Framework for Pavlovian Conditioning Phenomena

PDN

Personalized Disease Network

pdolsms

Panel Dynamic OLS Estimation of Cointegrating Vectors

pdp

Partial Dependence Plots

PdPDB

Pattern Discovery in PDB Structures of Metalloproteins

PDQutils

PDQ Functions via Gram Charlier, Edgeworth, and Cornish Fisher Approximations

pdR

Threshold Model and Unit Root Tests in Cross-section and Time Series Data

pds3

Manipulate PDS3 ODL Files

PDSCE

Positive definite sparse covariance estimators

PDShiny

'Probability Distribution Shiny'

pdSpecEst

An Analysis Toolbox for Hermitian Positive Definite Matrices

peacots

Periodogram Peaks in Correlated Time Series

Peak2Trough

Estimation of the peak-to-trough ratio of a seasonal variation component

PeakError

Compute the Annotation Error of Peak Calls

peakPantheR

Peak Picking and Annotation of High Resolution Experiments

peakPick

Peak Picking Methods Inspired by Biological Data

peakRAM

Monitor the Total and Peak RAM Used by an Expression or Function

Peaks

Peaks

PeakSegDisk

Disk-Based Implementation of PeakSegFPOP

PeakSegDP

Dynamic Programming Algorithm for Peak Detection in ChIP-Seq Data

PeakSegJoint

Joint Peak Detection in Several ChIP-Seq Samples

PeakSegOptimal

Optimal Segmentation Subject to Up-Down Constraints

pear

Package for Periodic Autoregression Analysis

pearson7

Maximum Likelihood Inference for the Pearson VII Distribution with Shape Parameter 3/2

PearsonDS

Pearson Distribution System

PearsonICA

Independent component analysis using score functions from the Pearson system

pec

Prediction Error Curves for Risk Prediction Models in Survival Analysis

PECA

Probe-level Expression Change Averaging

pedantics

Functions to Facilitate Power and Sensitivity Analyses for Genetic Studies of Natural Populations

pedbarrayv10.db

FHCRC Nelson Lab pedbarrayv10 Annotation Data (pedbarrayv10)

pedbarrayv9.db

FHCRC Nelson Lab pedbarrayv9 Annotation Data (pedbarrayv9)

PedCNV

An implementation for association analysis with CNV data.

pedgene

Gene-Level Statistics for Pedigree Data

pedigree

Pedigree functions

pedigreemm

Pedigree-based mixed-effects models

pedigreeTools

Versatile Functions for Working with Pedigrees

pedometrics

Pedometric Tools and Techniques

pedquant

Public Economic Data and Quantitative Analysis

PeerPerformance

Luck-Corrected Peer Performance Analysis in R

pegas

Population and Evolutionary Genetics Analysis System

PEGroupTesting

Population Proportion Estimation using Group Testing

PEIP

Geophysical Inverse Theory and Optimization

PELVIS

Probabilistic Sex Estimate using Logistic Regression, Based on VISual Traits of the Human Os Coxae

PEMM

A Penalized EM algorithm incorporating missing-data mechanism

pems.utils

Portable Emissions (and Other Mobile) Measurement System Utilities

penalized

L1 (Lasso and Fused Lasso) and L2 (Ridge) Penalized Estimation in GLMs and in the Cox Model

penalizedLDA

Penalized Classification using Fisher's Linear Discriminant

penalizedSVM

Feature Selection SVM using Penalty Functions

penaltyLearning

Penalty Learning

pencopula

Flexible Copula Density Estimation with Penalized Hierarchical B-Splines

pencopulaCond

Estimating Non-Simplified Vine Copulas Using Penalized Splines

PenCoxFrail

Regularization in Cox Frailty Models

pendensity

Density Estimation with a Penalized Mixture Approach

penDvine

Flexible Pair-Copula Estimation in D-Vines using Bivariate Penalized Splines

PenLNM

Group l1 penalized logistic normal multinomial (LNM) regression model.

penMSM

Estimating Regularized Multi-state Models Using L1 Penalties

penRvine

Flexible R-Vines Estimation Using Bivariate Penalized Splines

pense

Penalized Elastic Net S/MM-Estimator of Regression

pensim

Simulation of high-dimensional data and parallelized repeated penalized regression

pepDat

Peptide microarray data package

peperr

Parallelised Estimation of Prediction Error

peplib

Peptide Library Analysis Methods

PepPrep

Insilico peptide mutation, digestion and homologous comparison.

PepSAVIms

PepSAVI-MS Data Analysis

pepStat

Statistical analysis of peptide microarrays

peptider

Evaluation of Diversity in Nucleotide Libraries

Peptides

Calculate Indices and Theoretical Physicochemical Properties of Protein Sequences

pepXMLTab

Parsing pepXML files and filter based on peptide FDR.

pequod

Moderated Regression Package

perARMA

Periodic Time Series Analysis

Perc

Using Percolation and Conductance to Find Information Flow Certainty in a Direct Network

perccal

Implementing Double Bootstrap Linear Regression Confidence Intervals Using the 'perc-cal' Method

perccalc

Estimate Percentiles from an Ordered Categorical Variable

PerFit

Person Fit

PerfMeas

PerfMeas: Performance Measures for ranking and classification tasks

performance

Assessment of Regression Models Performance

PerformanceAnalytics

Econometric Tools for Performance and Risk Analysis

performanceEstimation

An Infra-Structure for Performance Estimation of Predictive Models

pergola

Toolbox for Polyploid Genetic Data

peRiodiCS

Functions for Generating Periodic Curves

PeriodicTable

Periodic Table of the Elements

periscope

Enterprise Streamlined 'Shiny' Application Framework

perm

Exact or Asymptotic permutation tests

PermAlgo

Permutational Algorithm to Simulate Survival Data

PerMallows

Permutations and Mallows Distributions

permDep

Permutation Tests for General Dependent Truncation

permGPU

Using GPUs in Statistical Genomics

permGS

Permutational Group Sequential Test for Time-to-Event Data

permPATH

Permutation Based Gene Expression Pathway Analysis

permtest

Permutation test to compare variability within and distance between two groups

permubiome

A Permutation Based Test for Biomarker Discovery in Microbiome Data

permuco

Permutation Tests for Regression, (Repeated Measures) ANOVA/ANCOVA and Comparison of Signals

permutations

The Symmetric Group: Permutations of a Finite Set

permute

Functions for Generating Restricted Permutations of Data

permutes

Permutation Tests for Time Series Data

PERregress

Regression Functions and Datasets

perry

Resampling-based prediction error estimation for regression models

PerseusR

Perseus R Interop

persiandictionary

English to Persian dictionary

PersianStemmer

Persian Stemmer for Text Analysis

PersomicsArray

Automated Persomics Array Image Extraction

personalized

Estimation and Validation Methods for Subgroup Identification and Personalized Medicine

personograph

Pictographic Representation of Treatment Effects

perspectev

Permutation of Species During Turnover Events

peRspective

Interface to the 'Perspective' API

perturb

Tools for Evaluating Collinearity

perturbatr

Statistical Analysis of High-Throughput Genetic Perturbation Screens

perturbR

Random Perturbation of Count Matrices

pesel

Automatic Estimation of Number of Principal Components in PCA

pesticides

Analysis of single serving and composite pesticide residue measurements

PET

Simulation and Reconstruction of PET Images

PetfindeR

'Petfinder' API Wrapper

petitr

Relative Growth Rate

pETM

Penalized Exponential Tilt Model

petrinetR

Building, Visualizing, Exporting and Replaying Petri Nets

petro.One

Statistics and Text Mining for Oil and Gas Papers from OnePetro Metadata

pewdata

Reproducible Retrieval of Pew Research Center Datasets

pez

Phylogenetics for the Environmental Sciences

PF

Prevented fraction.

pfa

Estimates False Discovery Proportion Under Arbitrary Covariance Dependence

PFAM.db

A set of protein ID mappings for PFAM

pfda

Paired Functional Data Analysis

PGA

An package for identification of novel peptides by customized database derived from RNA-Seq

pgam

Poisson-Gamma Additive Models

pgbart

Bayesian Additive Regression Trees Using Particle Gibbs Sampler and Gibbs/Metropolis-Hastings Sampler

pgca

PGCA: An Algorithm to Link Protein Groups Created from MS/MS Data

pgdraw

Generate Random Samples from the Polya-Gamma Distribution

PGEE

Penalized Generalized Estimating Equations in High-Dimension

pgee.mixed

Penalized Generalized Estimating Equations for Bivariate Mixed Outcomes

PGICA

Parallel Group ICA Algorithm

pgirmess

Spatial Analysis and Data Mining for Field Ecologists

pglm

Panel Generalized Linear Models

pGLS

Generalized Least Square in comparative Phylogenetics

PGM2

Nested Resolvable Designs and their Associated Uniform Designs

pGMGM

Estimating Multiple Gaussian Graphical Models (GGM) in Penalized Gaussian Mixture Models (GMM)

pgmm

Parsimonious Gaussian Mixture Models

pgnorm

The p-Generalized Normal Distribution

PGPC

Experimental data and analysis of the chemical-genetic interaction screen in isogenic HCT116 cell lines

pGPx

Pseudo-Realizations for Gaussian Process Excursions

pgraph

Build Dependency Graphs using Projection

PGRdup

Discover Probable Duplicates in Plant Genetic Resources Collections

pgs

Precision of Geometric Sampling

pgsc

Computes Powell's Generalized Synthetic Control Estimator

PGSEA

Parametric Gene Set Enrichment Analysis

ph2bayes

Bayesian Single-Arm Phase II Designs

ph2bye

Phase II Clinical Trial Design Using Bayesian Methods

ph2hetero

Stratified Adaptive Designs for Two-Stage Phase II Studies

ph2mult

Phase II Clinical Trial Design for Multinomial Endpoints

phalen

Phalen Algorithms and Functions

phangorn

Phylogenetic Reconstruction and Analysis

phantasus

Visual and interactive gene expression analysis

phantom

Gene Set Pareto Heterogeneity Analysis of Time-Course Gene Expression Data

PharmacoGx

Analysis of Large-Scale Pharmacogenomic Data

PharmacoGx

Analysis of Large-Scale Pharmacogenomic Data

PharmPow

Pharmacometric Power calculations for mixed study designs

Phase123

Simulating and Conducting Phase 123 Trials

phase1PRMD

Personalized Repeated Measurement Design for Phase I Clinical Trials

phase1RMD

Repeated Measurement Design for Phase I Clinical Trial

phaseR

Phase Plane Analysis of One and Two Dimensional Autonomous ODE Systems

PhaseType

Inference for Phase-type Distributions

phastCons100way.UCSC.hg19

UCSC phastCons conservation scores for hg19

phastCons100way.UCSC.hg38

UCSC phastCons conservation scores for hg38

phastCons7way.UCSC.hg38

UCSC phastCons conservation scores for hg38

phateR

PHATE - Potential of Heat-Diffusion for Affinity-Based Transition Embedding

phcfM

Modelling anthropogenic deforestation

pheatmap

Pretty Heatmaps

PHEindicatormethods

Common Public Health Statistics and their Confidence Intervals

phenability

Nonparametric Stability Analysis

phenex

Auxiliary Functions for Phenological Data Analysis

PHENIX

Phenotypic Integration Index

phenmod

Auxiliary functions for phenological data processing, modelling and result handling

pheno

Auxiliary functions for phenological data analysis

pheno2geno

High-Throughput Generation of Genetic Markers and Maps from Molecular Phenotypes for Crosses Between Inbred Strains

phenocamapi

Interacting with the PhenoCam Data and API

phenocamr

Facilitates 'PhenoCam' Data Access and Time Series Post-Processing

phenoCDM

Continuous Development Models for Incremental Time-Series Analysis

phenoDist

Phenotypic distance measures

phenofit

Extract Remote Sensing Vegetation Phenology

phenology

Tools to Manage a Parametric Function that Describes Phenology

phenomap

Projecting Satellite-Derived Phenology in Space

phenopath

Genomic trajectories with heterogeneous genetic and environmental backgrounds

phenopix

Process Digital Images of a Vegetation Cover

phenoTest

Tools to test association between gene expression and phenotype in a way that is efficient, structured, fast and scalable. We also provide tools to do GSEA (Gene set enrichment analysis) and copy number variation.

PhenotypeSimulator

Flexible Phenotype Simulation from Different Genetic and Noise Models

PhenStat

Statistical analysis of phenotypic data

PHeval

Evaluation of the Proportional Hazards Assumption with a Standardized Score Process

phia

Post-Hoc Interaction Analysis

phiDelta

Tool for Phi Delta Analysis of Features

philentropy

Similarity and Distance Quantification Between Probability Functions

philr

Phylogenetic partitioning based ILR transform for metagenomics data

phitest

Nonparametric goodness-of-fit methods based on phi-divergences

phmm

Proportional Hazards Mixed-Effects Model

phom

Persistent Homology in R

phonenumber

Convert Letters to Numbers and Back as on a Telephone Keypad

phonics

Phonetic Spelling Algorithms

phonR

Tools for Phoneticians and Phonologists

phonTools

Tools for Phonetic and Acoustic Analyses

phosphonormalizer

Compensates for the bias introduced by median normalization in phosphoproteomics

photobiology

Photobiological Calculations

photobiologyFilters

Spectral Transmittance Data for Filters

photobiologyInOut

Read Spectral and Logged Data from Foreign Files

photobiologyLamps

Spectral Irradiance Data for Lamps

photobiologyLEDs

Spectral Data for Light-Emitting-Diodes

photobiologyPlants

Plant Photobiology Related Functions and Data

photobiologySensors

Spectral Response Data for Light Sensors

photobiologySun

Data for Sunlight Spectra

photobiologyWavebands

Waveband Definitions for UV, VIS, and IR Radiation

photosynthesis

Model C3 Photosynthesis

phrasemachine

Simple Phrase Extraction

phreeqc

R Interface to Geochemical Modeling Software

phtt

Panel Data Analysis with Heterogeneous Time Trends

phuassess

Proportional Habitat Use Assessment

phuse

Web Application Framework for 'PhUSE' Scripts

PhViD

PharmacoVigilance Signal Detection

Phxnlme

Run Phoenix NLME and Perform Post-Processing

PhyActBedRest

Marks periods of sleep in Actigraph accelerometer data

phybreak

Analysis of Outbreaks with Sequence Data

phyclust

Phylogenetic Clustering (Phyloclustering)

phyext

An extension of some of the classes in phylobase. Tree objects now support subnodes on branches

phyext2

An Extension (for Package 'SigTree') of Some of the Classes in Package 'phylobase'

PhyInformR

Rapid Calculation of Phylogenetic Information Content

phylin

Spatial Interpolation of Genetic Data

phylobase

Base Package for Phylogenetic Structures and Comparative Data

phylocanvas

Interactive Phylogenetic Trees Using the 'Phylocanvas' JavaScript Library

phyloclim

Integrating Phylogenetics and Climatic Niche Modeling

phylocomr

Interface to 'Phylocom'

phylocurve

Phylogenetic Comparative Methods for High-Dimensional Traits

phylodyn

Statistical Tools for Phylodynamics

PhylogeneticEM

Automatic Shift Detection using a Phylogenetic EM

PHYLOGR

Functions for Phylogenetically Based Statistical Analyses

phylogram

Dendrograms for Evolutionary Analysis

phyloland

Modelling Competitive Exclusion and Limited Dispersal in a Statistical Phylogeographic Framework

phylolm

Phylogenetic Linear Regression

PhyloMeasures

Fast and Exact Algorithms for Computing Phylogenetic Biodiversity Measures

phylometrics

Estimating Statistical Errors of Phylogenetic Metrics

phylopath

Perform Phylogenetic Path Analysis

phyloseq

Handling and analysis of high-throughput microbiome census data

phyloseqGraphTest

Graph-Based Permutation Tests for Microbiome Data

phylosignal

Exploring the Phylogenetic Signal in Continuous Traits

phylosim

Flexible Simulations of Biological Sequence Evolution

phylotaR

Automated Phylogenetic Sequence Cluster Identification from 'GenBank'

phylotate

Phylogenies with Annotations

phylotools

Phylogenetic Tools for Eco-Phylogenetics

phyloTop

Calculating Topological Properties of Phylogenies

phyndr

Matches Tip and Trait Data

phyreg

The Phylogenetic Regression of Grafen (1989)

PhysActBedRest

Marks Periods of 'Bedrest' in Actigraph Accelerometer Data

PhysicalActivity

Process Accelerometer Data for Physical Activity Measurement

physiology

Calculate physiologic characteristics of awake and anesthetized adults, children and infants

PhySortR

A Fast, Flexible Tool for Sorting Phylogenetic Trees

phytools

Phylogenetic Tools for Comparative Biology (and Other Things)

Pi

Leveraging Genetic Evidence to Prioritise Drug Targets at the Gene and Pathway Level

pi0

Estimating the Proportion of True Null Hypotheses for FDR

piano

Platform for integrative analysis of omics data

picante

Integrating Phylogenies and Ecology

picasso

Pathwise Calibrated Sparse Shooting Algorithm

pickgene

Adaptive Gene Picking for Microarray Expression Data Analysis

PICS

Probabilistic inference of ChIP-seq

pid

Process Improvement using Data

PieceExpIntensity

Bayesian Model to Find Changepoints Based on Rates and Count Data

piecepackr

Board Game Graphics

piecewiseSEM

Piecewise Structural Equation Modeling

pifpaf

Potential Impact Fraction and Population Attributable Fraction for Cross-Sectional Data

pig.db0

Base Level Annotation databases for pig

PIGE

Self Contained Gene Set Analysis for Gene- And Pathway-Environment Interaction Analysis

Pigengene

Infers biological signatures from gene expression data

piggyback

Managing Larger Data on a GitHub Repository

PIGShift

Polygenic Inverse Gamma Shifts

Pijavski

Global Univariate Minimization

pillar

Coloured Formatting for Columns

pim

Fit Probabilistic Index Models

pimeta

Prediction Intervals for Random-Effects Meta-Analysis

PIN

Estimates the parameters of a trading-tree model for the computation of the probability of informed trading

pinbasic

Fast and Stable Estimation of the Probability of Informed Trading (PIN)

pinfsc50

Sequence ('FASTA'), Annotation ('GFF') and Variants ('VCF') for 17 Samples of 'P. Infestans" and 1 'P. Mirabilis'

PING

Probabilistic inference for Nucleosome Positioning with MNase-based or Sonicated Short-read Data

pingers

Identify, Ping, and Log Internet Provider Connection Data

pingr

Check if a Remote Computer is Up

pinnacle.API

A Wrapper for the Pinnacle API

pinnacle.data

Market Odds Data from Pinnacle

pinochet

Data About the Victims of the Pinochet Regime, 1973-1990

pinp

'pinp' is not 'PNAS'

PINSPlus

Clustering Algorithm for Data Integration and Disease Subtyping

pint

Pairwise INTegration of functional genomics data

pinyin

Convert Chinese Characters into Pinyin, Sijiao, Wubi or Other Codes

pipe.design

Dual-Agent Dose Escalation for Phase I Trials using the PIPE Design

pipefittr

Convert Nested Functions to Pipes

pipeGS

Permutation p-Value Estimation for Gene Set Tests

pipeliner

Machine Learning Pipelines for R

pipeR

Multi-Paradigm Pipeline Implementation

PIPS

Predicted Interval Plots

pirate

Generated Effect Modifier

piratings

Calculate Pi Ratings for Teams Competing in Sport Matches

pitchRx

Tools for Harnessing 'MLBAM' 'Gameday' Data and Visualizing 'pitchfx'

piton

Parsing Expression Grammars in Rcpp

pivmet

Pivotal Methods for Bayesian Relabelling and k-Means Clustering

pivot

'SQL' PIVOT and UNPIVOT

PivotalR

A Fast, Easy-to-Use Tool for Manipulating Tables in Databases and a Wrapper of MADlib

pivotaltrackR

A Client for the 'Pivotal Tracker' API

pivottabler

Create Pivot Tables in R

pixels

Tools for Working with Image Pixels

pixiedust

Tables so Beautifully Fine-Tuned You Will Believe It's Magic

pixmap

Bitmap Images (``Pixel Maps'')

PK

Basic Non-Compartmental Pharmacokinetics

PKconverter

The Parameter Converter of the Pharmacokinetic Models

PKfit

Data Analysis Tool for Pharmacokinetics

pkgbuild

Find Tools Needed to Build R Packages

pkgcache

Cache 'CRAN'-Like Metadata and R Packages

pkgcond

Classed Error and Warning Conditions

pkgconfig

Private Configuration for 'R' Packages

pkgcopier

Copy Local R Packages to Another Environment

pkgDepTools

Package Dependency Tools

pkgdown

Make Static HTML Documentation for a Package

pkggraph

A Consistent and Intuitive Platform to Explore the Dependencies of Packages on the Comprehensive R Archive Network Like Repositories

pkgKitten

Create Simple Packages Which Do not Upset R Package Checks

pkgload

Simulate Package Installation and Attach

pkgmaker

Development Utilities for R Packages

pkgnet

Get Network Representation of an R Package

PKgraph

Model diagnostics for population pharmacokinetic models

pkgsearch

Search CRAN R Packages

PkgsFromFiles

Finding and Installing Packages Used in R and RMarkdown Files

pkgutils

pkgutils -- Utilities for creating R packages.

pkgverse

Build a Meta-Package Universe

PKI

Public Key Infrastucture for R Based on the X.509 Standard

PKmodelFinder

Software for Pharmacokinetic model

pkmon

Least-Squares Estimator under k-Monotony Constraint for Discrete Functions

PKNCA

Perform Pharmacokinetic Non-Compartmental Analysis

PKPDmisc

Pharmacokinetic and Pharmacodynamic Data Management Functions

PKPDmodels

Pharmacokinetic/pharmacodynamic models

pkr

Pharmacokinetics in R

PKreport

A reporting pipeline for checking population pharmacokinetic model assumption

pks

Probabilistic Knowledge Structures

pKSEA

Prediction-Based Kinase-Substrate Enrichment Analysis

pksensi

Global Sensitivity Analysis in Physiologically Based Kinetic Modeling

PKtools

unified computational interfaces for pop PK

PL.popN

Population Size Estimation

pla

Parallel Line Assays

plac

A Pairwise Likelihood Augmented Cox Estimator for Left-Truncated Data

placement

Tools for Accessing the Google Maps API

PlackettLuce

Plackett-Luce Models for Rankings

plainview

Plot Raster Images Interactively on a Plain HTML Canvas

plan

Tools for Project Planning

planar

Multilayer Optics

Planesmuestra

Functions for Calculating Dodge Romig, MIL STD 105E and MIL STD 414 Acceptance Sampling Plan

planor

Generation of Regular Factorial Designs

plantecophys

Modelling and Analysis of Leaf Gas Exchange Data

plaqr

Partially Linear Additive Quantile Regression

plasFIA

FIA-HRMS plasma dataset

PlasmaMutationDetector

Tumor Mutation Detection in Plasma

Plasmidprofiler

Visualization of Plasmid Profile Results

Plasmode

'Plasmode' Simulation

plasmodiumanophelescdf

plasmodiumanophelescdf

plasmodiumanophelesprobe

Probe sequence data for microarrays of type plasmodiumanopheles

plateCore

Statistical tools and data structures for plate-based flow cytometry

plater

Read, Tidy, and Display Data from Microtiter Plates

platetools

Tools and Plots for Multi-Well Plates

PlayerRatings

Dynamic Updating Methods for Player Ratings Estimation

playitbyr

Representing and exploring data through sound

playwith

A GUI for interactive plots using GTK+

plde

Penalized Log-Density Estimation Using Legendre Polynomials

pleiades

Interface to the 'Pleiades' 'Archeological' Database

pleio

Pleiotropy Test for Multiple Traits on a Genetic Marker

plethem

Population Life Course Exposure to Health Effects Modeling

plethy

R framework for exploration and analysis of respirometry data

plfm

Probabilistic Latent Feature Analysis

plfMA

A GUI to View, Design and Export Various Graphs of Data

plgem

Detect differential expression in microarray and proteomics datasets with the Power Law Global Error Model (PLGEM)

plgp

Particle Learning of Gaussian Processes

pliable

The Pliable Lasso

plier

Implements the Affymetrix PLIER algorithm

plink

IRT Separate Calibration Linking Methods

plinkQC

Genotype Quality Control with 'PLINK'

PLIS

Multiplicity control using Pooled LIS statistic

plm

Linear Models for Panel Data

plmDE

Additive partially linear models for differential gene expression analysis

PLMIX

Bayesian Analysis of Finite Mixtures of Plackett-Luce Models for Partial Rankings/Orderings

PLmixed

Estimate (Generalized) Linear Mixed Models with Factor Structures

plmm

Partially Linear Mixed Effects Model

pln

Polytomous logit-normit (graded logistic) model estimation

PLNmodels

Poisson Lognormal Models

plogr

The 'plog' C++ Logging Library

PLordprob

Multivariate Ordered Probit Model via Pairwise Likelihood

plot.matrix

Visualizes a Matrix as Heatmap

plot2groups

Plot scatter points for two groups of values

plot3D

Plotting Multi-Dimensional Data

plot3Drgl

Plotting Multi-Dimensional Data - Using 'rgl'

plot3logit

Ternary Plots for Trinomial Regression Models

PlotContour

Plot Contour Line

plotdap

Easily Visualize Data from 'ERDDAP' Servers via the 'rerddap' Package

plotfunctions

Various Functions to Facilitate Visualization of Data and Analysis

plotGMM

Tools for Visualizing Gaussian Mixture Models

plotGoogleMaps

Plot Spatial or Spatio-Temporal Data Over Google Maps

plothelper

New Plots Based on 'ggplot2' and Functions to Create Regular Shapes

plotKML

Visualization of Spatial and Spatio-Temporal Objects in Google Earth

plotluck

'ggplot2' Version of "I'm Feeling Lucky!"

plotly

Create Interactive Web Graphics via 'plotly.js'

plotlyGeoAssets

Render 'Plotly' Maps without an Internet Connection

plotMCMC

MCMC Diagnostic Plots

plotMElm

Plot Marginal Effects from Linear Models

plotmo

Plot a Model's Residuals, Response, and Partial Dependence Plots

plotpc

Plot Principal Component Histograms Around a Scatter Plot

PlotPrjNetworks

Useful Networking Tools for Project Management

plotprotein

Development of Visualization Tools for Protein Sequence

PlotRegionHighlighter

Creates an envelope that surrounds a set of points plotted in a two dimensional space.

plotrix

Various Plotting Functions

plotROC

Generate Useful ROC Curve Charts for Print and Interactive Use

plotrr

Making Visual Exploratory Data Analysis with Nested Data Easier

plotSEMM

Graphing Nonlinear Relations Among Latent Variables from Structural Equation Mixture Models

plotwidgets

Spider Plots, ROC Curves, Pie Charts and More for Use in Other Plots

PLPE

Local Pooled Error Test for Differential Expression with Paired High-throughput Data

plRasch

Log Linear by Linear Association models and Rasch family models by pseudolikelihood estimation

PLRModels

Statistical inference in partial linear regression models

plrs

Piecewise Linear Regression Splines (PLRS) for the association between DNA copy number and gene expression

pls

Partial Least Squares and Principal Component Regression

PLSbiplot1

The Partial Least Squares (PLS) Biplot

plsdepot

Partial Least Squares (PLS) Data Analysis Methods

plsdof

Degrees of Freedom and Statistical Inference for Partial Least Squares Regression

plsgenomics

PLS Analyses for Genomics

plspm

Tools for Partial Least Squares Path Modeling (PLS-PM)

plspm.formula

Formula Based PLS Path Modeling

plspolychaos

Sensitivity Indexes from Polynomial Chaos Expansions and PLS

plsr

Pleasure - Partial Least Squares Analysis with Permutation Testing

plsRbeta

Partial Least Squares Regression for Beta Regression Models

plsRcox

Partial Least Squares Regression for Cox Models and Related Techniques

plsRglm

Partial Least Squares Regression for Generalized Linear Models

plsVarSel

Variable Selection in Partial Least Squares

pltesim

Simulate Probabilistic Long-Term Effects in Models with Temporal Dependence

plugdensity

Plug-in Kernel Density Estimation

plumber

An API Generator for R

plumbr

Mutable and dynamic data models

plus

Penalized Linear Unbiased Selection

pluscode

Encoder for Google 'Pluscodes'

plusser

A Google+ Interface for R

plw

Probe level Locally moderated Weighted t-tests.

plyr

Tools for Splitting, Applying and Combining Data

plyranges

A fluent interface for manipulating GenomicRanges

pm4py

Interface to the 'PM4py' Process Mining Library

PMA

Penalized Multivariate Analysis

pmap

Process Map Visualization

pmatch

Pattern Matching

pmc

Phylogenetic Monte Carlo

pmcgd

pmcgd

pmclust

Parallel Model-Based Clustering using Expectation-Gathering-Maximization Algorithm for Finite Mixture Gaussian Model

PMCMR

Calculate Pairwise Multiple Comparisons of Mean Rank Sums

PMCMRplus

Calculate Pairwise Multiple Comparisons of Mean Rank Sums Extended

pmd

Paired Mass Distance Analysis for GC/LC-MS Based Non-Targeted Analysis

pmfdR

Book Companion for Processing and Modelling Financial Data with R

pmg

Poor Man's GUI

pmhtutorial

Minimal Working Examples for Particle Metropolis-Hastings

pMineR

Processes Mining in Medicine

pmlr

Penalized Multinomial Logistic Regression

pmm

Parallel Mixed Model

PMmisc

P&M Miscellaneous R Functions

pmml

Generate PMML for Various Models

pmmlTransformations

Transforms Input Data from a PMML Perspective

pmpp

Posterior Mean Panel Predictor

pmr

Probability Models for Ranking Data

pmsampsize

Calculates the Minimum Sample Size Required for Developing a Multivariable Prediction Model

pmultinom

One-Sided Multinomial Probabilities

PMwR

Portfolio Management with R

pmxTools

Pharmacometric and Pharmacokinetic Toolkit

PNADcIBGE

Downloading, Reading and Analysing PNADc Microdata

pnea

Parametric Network Enrichment Analysis

pnf

Prime Numbers and Integer Factorization

png

Read and write PNG images

pnmtrem

Probit-Normal Marginalized Transition Random Effects Models

pnn

Probabilistic neural networks

PoA

Finds the Price of Anarchy for Routing Games

POCRCannotation.db

A package containing metadata for POCRC arrays

POCRE

Penalized Orthogonal-Components Regression

pocrm

Dose Finding in Drug Combination Phase I Trials Using PO-CRM

POD

Probability of Detection for Qualitative PCR Methods

podkat

Position-Dependent Kernel Association Test

POET

Principal Orthogonal ComplEment Thresholding (POET) Method

pogit

Bayesian Variable Selection for a Poisson-Logistic Model

pogos

PharmacOGenomics Ontology Support

poibin

The Poisson Binomial Distribution

PoiClaClu

Classification and Clustering of Sequencing Data Based on a Poisson Model

poilog

Poisson lognormal and bivariate Poisson lognormal distribution

POINT

Protein Structure Guided Local Test

pointblank

Validation of Local and Remote Data Tables

pointdensityP

Point Density for Geospatial Data

pointdexter

Labels Points Inside Polygons

PointFore

Interpretation of Point Forecasts as State-Dependent Quantiles and Expectiles

pointRes

Analyzing Pointer Years and Components of Resilience

poio

Input/Output Functionality for "PO" and "POT" Message Translation Files

PoisBinNonNor

Data Generation with Poisson, Binary and Continuous Components

poisbinom

A Faster Implementation of the Poisson-Binomial Distribution

PoisBinOrd

Data Generation with Poisson, Binary and Ordinal Components

PoisBinOrdNonNor

Generation of Up to Four Different Types of Variables

PoisBinOrdNor

Data Generation with Poisson, Binary, Ordinal and Normal Components

poisFErobust

Poisson Fixed Effects Robust

PoisNonNor

Simultaneous Generation of Count and Continuous Data

PoisNor

Simultaneous Generation of Multivariate Data with Poisson and Normal Marginals

poisson

Simulating Homogenous & Non-Homogenous Poisson Processes

poisson.glm.mix

Fit high dimensional mixtures of Poisson GLMs

poissonMT

Robust M-Estimators Based on Transformations for Poisson Model

PoissonPCA

Poisson-Noise Corrected PCA

PoissonSeq

Significance analysis of sequencing data based on a Poisson log linear model

poistweedie

Poisson-Tweedie exponential family models

poker

Play Texas Hold Em Poker

poLCA

Polytomous variable Latent Class Analysis

polidata

Political Data Interface in R

poliscidata

Datasets and Functions Featured in Pollock and Edwards, An R Companion to Essentials of Political Analysis, Second Edition

politeness

Detecting Politeness Features in Text

politicaldata

Tools for Acquiring and Analyzing Political Data

pollen

Analysis of Aerobiological Data

pollimetry

Estimate Pollinator Body Size and Co-Varying Ecological Traits

pollstR

Client for the HuffPost Pollster API

polmineR

Toolkit for Corpus Analysis

PoloniexR

Interface to the Poloniex Cryptocurrency Trading API

polspline

Polynomial Spline Routines

polyaAeppli

Implementation of the Polya-Aeppli distribution

polyapost

Simulating from the Polya Posterior

polychaosbasics

Sensitivity Indexes Calculated from Polynomial Chaos Expansions

Polychrome

Qualitative Palettes with Many Colors

polyclip

Polygon Clipping

polycor

Polychoric and Polyserial Correlations

polyCub

Cubature over Polygonal Domains

polydect

polydect

polyester

Simulate RNA-seq reads

Polyfit

Add-on to DESeq to improve p-values and q-values

polyfreqs

Bayesian Population Genomics in Autopolyploids

polyglot

Learn Foreign Language Vocabulary

polylabelr

Find the Pole of Inaccessibility (Visual Center) of a Polygon

polymapR

Linkage Analysis in Outcrossing Polyploids

polynom

A Collection of Functions to Implement a Class for Univariate Polynomial Manipulations

PolynomF

Polynomials in R

PolyPatEx

Paternity Exclusion in Autopolyploid Species

polyphemus

Genome wide analysis of RNA Polymerase II-based ChIP Seq data.

PolyPhen.Hsapiens.dbSNP131

PolyPhen Predictions for Homo sapiens dbSNP build 131

polyPK

The Pharmacokinetics (PK) of Multi-Component Drugs Using a Metabolomics Approach

polypoly

Helper Functions for Orthogonal Polynomials

polyRAD

Genotype Calling with Uncertainty from Sequencing Data in Polyploids and Diploids

polyreg

Polynomial Regression

polysat

Tools for Polyploid Microsatellite Analysis

polySegratio

Simulate and Test Marker Dosage for Dominant Markers in Autopolyploids

polySegratioMM

Bayesian Mixture Models for Marker Dosage in Autopolyploids

polytomous

Polytomous logistic regression for fixed and mixed effects

PolyTrend

Trend Classification Algorithm

polywog

Bootstrapped Basis Regression with Oracle Model Selection

pom

POM - Patch Occupancy Models

POMaSPU

Adaptive Association Tests for Multiple Phenotypes using Proportional Odds Model (POM-aSPU)

pomdp

Solver for Partially Observable Markov Decision Processes (POMDP)

Pomic

Pattern Oriented Modelling Information Criterion

PoMoS

Polynomial (ordinary differential equation) Model Search

pomp

Statistical Inference for Partially Observed Markov Processes

pompom

Person-Oriented Method and Perturbation on the Model

pooh

Partial Orders and Relations

pool

Object Pooling

PooledMeanGroup

Pooled Mean Group Estimation of Dynamic Heterogenous Panels

poolfstat

Computing F-Statistics from Pool-Seq Data

pooling

Fit Poolwise Regression Models

poolVIM

Gene-Based Association Tests using the Actual Impurity Reduction (AIR) Variable Importance

pop

A Flexible Syntax for Population Dynamic Modelling

pop.wolf

Models for Simulating Wolf Populations

popbio

Construction and Analysis of Matrix Population Models

popdemo

Demographic Modelling Using Projection Matrices

POPdemog

Plot Population Demographic History

PopED

Population (and Individual) Optimal Experimental Design

popEpi

Functions for Epidemiological Analysis using Population Data

popgen

Statistical and Population Genetics

PopGenKit

Useful functions for (batch) file conversion and data resampling in microsatellite datasets

PopGenome

An Efficient Swiss Army Knife for Population Genomic Analyses

PopGenReport

A Simple Framework to Analyse Population and Landscape Genetic Data

popgraph

This is an R package that constructs and manipulates population graphs.

popkin

Estimate Kinship and FST under Arbitrary Population Structure

popKorn

For interval estimation of mean of selected populations

poplarcdf

poplarcdf

poplarprobe

Probe sequence data for microarrays of type poplar

poplite

Tools for Simplifying the Population and Querying of SQLite Databases

popPK

Summary of Population Pharmacokinetic Analysis

poppr

Genetic Analysis of Populations with Mixed Reproduction

popprxl

Read GenAlEx Files Directly from Excel

popRange

popRange: A spatially and temporally explicit forward genetic simulator

popReconstruct

Reconstruct Human Populations of the Recent Past

popsom

Functions for Constructing and Evaluating Self-Organizing Maps

poptrend

Estimate Smooth and Linear Trends from Population Count Survey Data

population

Models for Simulating Populations

populationPDXdesign

Designing Population PDX Studies

PopVar

Genomic Breeding Tools: Genetic Variance Prediction and Cross-Validation

porcine.db

Affymetrix porcine annotation data (chip porcine)

porcinecdf

porcinecdf

porcineprobe

Probe sequence data for microarrays of type porcine

portalr

Create Useful Summaries of the Portal Data

portes

Portmanteau Tests for Univariate and Multivariate Time. Series Models

portfolio

Analysing equity portfolios

PortfolioAnalytics

Portfolio Analysis, Including Numerical Methods for Optimization of Portfolios

portfolioBacktest

Automated Backtesting of Portfolios over Multiple Datasets

PortfolioEffectEstim

High Frequency Price Estimators by PortfolioEffect

PortfolioEffectHFT

High Frequency Portfolio Analytics by PortfolioEffect

PortfolioOptim

Small/Large Sample Portfolio Optimization

portfolioSim

Framework for simulating equity portfolio strategies

PortRisk

Portfolio Risk Analysis

portsort

Factor-Based Portfolio Sorts

PoSI

Valid Post-Selection Inference for Linear LS Regression

POST

Projection onto Orthogonal Space Testing for High Dimensional Data

postal

United States Postal Service API Interface

postCP

A package to estimate posterior probabilities and perform model selection in change-point models using constrained HMM.

postGIStools

Tools for Interacting with 'PostgreSQL' / 'PostGIS' Databases

postgwas

GWAS Post-Processing Utilities

postinfectious

Estimating the Incubation Period Distribution of Post-Infectious Syndrome

postlightmercury

Parses Web Pages using Postlight Mercury

postlogic

Infix and Postfix Logic Operators

POT

Generalized Pareto Distribution and Peaks Over Threshold

potts

Markov Chain Monte Carlo for Potts Models

PottsUtils

Utility Functions of the Potts Models

POUMM

The Phylogenetic Ornstein-Uhlenbeck Mixed Model

powdist

Power and Reversal Power Distributions

powdR

Full Pattern Summation of X-Ray Powder Diffraction Data

powell

Powell's UObyQA algorithm

PoweR

Computation of Power and Level Tables for Hypothesis Tests

Power2Stage

Power and Sample-Size Distribution of 2-Stage Bioequivalence Studies

powerAnalysis

Power Analysis in Experimental Design

powerbydesign

Power Estimates for ANOVA Designs

powerCompRisk

Power Analysis Tool for Joint Testing Hazards with Competing Risks Data

powerCRT

Power Analysis for Cluster Randomized Trials

powerEQTL

Power and Sample Size Calculation for eQTL Analysis

PowerExplorer

Power Estimation Tool for RNA-Seq and proteomics data

PowerfulMaxEigenpair

Powerful Algorithm for Maximal Eigenpair

powerGWASinteraction

Power Calculations for GxE and GxG Interactions for GWAS

poweRlaw

Analysis of Heavy Tailed Distributions

powerlmm

Power Analysis for Longitudinal Multilevel Models

powerMediation

Power/Sample Size Calculation for Mediation Analysis

PowerNormal

Power Normal Distribution

powerpkg

Power analyses for the affected sib pair and the TDT design

powerplus

Exponentiation Operations

powerr

Analysis of Power System

powerSurvEpi

Power and Sample Size Calculation for Survival Analysis of Epidemiological Studies

powerTCR

Model-Based Comparative Analysis of the TCR Repertoire

PowerTOST

Power and Sample Size Based on Two One-Sided t-Tests (TOST) for (Bio)Equivalence Studies

PowerUpR

Power Analysis Tools for Multilevel Randomized Experiments

PowerVenn

Statistical Test of Higher Order Intersections Among Multiple Sets

PP

Person Parameter Estimation

PP3

Three-Dimensional Exploratory Projection Pursuit

ppcc

Probability Plot Correlation Coefficient Test

PPCI

Projection Pursuit for Cluster Identification

ppclust

Probabilistic and Possibilistic Cluster Analysis

ppcor

Partial and Semi-Partial (Part) Correlation

ppcSpatial

Spatial Analysis of Pakistan Population Census

PPforest

Projection Pursuit Classification Forest

ppgmmga

Projection Pursuit Based on Gaussian Mixtures and Evolutionary Algorithms

ppiData

A package that contains the bait to prey directed graphs for protein-protein interactions.

PPInfer

Inferring functionally related proteins using protein interaction networks

ppiPre

Predict Protein-Protein Interactions Based on Functional and Topological Similarities

ppiStats

Protein-Protein Interaction Statistical Package

ppitables

Lookup Tables to Generate Poverty Likelihoods and Rates using the Poverty Probability Index (PPI)

ppls

Penalized Partial Least Squares

ppMeasures

Point pattern distances and prototypes.

ppmlasso

Point Process Models with LASSO Penalties

PPQplan

Process Performance Qualification (PPQ) Plans in Chemistry, Manufacturing and Controls (CMC) Statistical Analysis

PPRL

Privacy Preserving Record Linkage

pps

Functions for PPS sampling

ppsbm

Clustering in Longitudinal Networks

ppstat

Point Process Statistics

PPtree

Projection pursuit classification tree

PPtreeViz

Projection Pursuit Classification Tree Visualization

pqantimalarials

web tool for estimating under-five deaths caused by poor-quality antimalarials in sub-Saharan Africa

PQLseq

Efficient Mixed Model Analysis of Count Data in Large-Scale Genomic Sequencing Studies

pqsfinder

Identification of potential quadruplex forming sequences

prabclus

Functions for Clustering and Testing of Presence-Absence, Abundance and Multilocus Genetic Data

pracma

Practical Numerical Math Functions

PracTools

Tools for Designing and Weighting Survey Samples

prada

Data analysis for cell-based functional assays

pragma

Provides a pragma / directive / keyword syntax for R.

prais

Prais-Winsten Estimator for AR(1) Serial Correlation

praise

Praise Users

praktikum

Kvantitatiivsete meetodite praktikumi asjad / Functions used in the course "Quantitative methods in behavioural sciences" (SHPH.00.004), University of Tartu

praznik

Collection of Information-Based Feature Selection Filters

prc

Paired Response Curve

prcbench

Testing Workbench for Precision-Recall Curves

prclust

Penalized Regression-Based Clustering Method

prcr

Person-Centered Analysis

pre

Prediction Rule Ensembles

prebs

Probe region expression estimation for RNA-seq data for improved microarray comparability

prebsdata

Data for 'prebs' package

precintcon

Precipitation Intensity, Concentration and Anomaly Analysis

PrecipStat

Precipitation Statistics

PreciseSums

Accurate Floating Point Sums and Products

precrec

Calculate Accurate Precision-Recall and ROC (Receiver Operator Characteristics) Curves

PREDA

Position Related Data Analysis

PREDAsampledata

expression and copy number data on clear cell renal carcinoma samples

predatory

Tools for Detecting Predatory Publishers and Journals

predfinitepop

Predictive Inference on Totals and Averages of Finite Populations Segmented in Planned and Unplanned Domains.

predict3d

Draw Three Dimensional Predict Plot Using Package 'rgl'

PredictABEL

Assessment of Risk Prediction Models

prediction

Tidy, Type-Safe 'prediction()' Methods

predictionet

Inference for predictive networks designed for (but not limited to) genomic data

predictionInterval

Prediction Interval Functions for Assessing Replication Study Results

PredictionR

Prediction for Future Data from any Continuous Distribution

PredictiveRegression

Prediction Intervals for Three Basic Statistical Models

predictmeans

Calculate Predicted Means for Linear Models

predictoR

Predictive Data Analysis System

predictrace

Predict the Race of a Given Surname Using Census Data

PredictTestbench

Test Bench for Comparison of Data Prediction Models

predkmeans

Covariate Adaptive Clustering

predmixcor

Classification rule based on Bayesian mixture models with feature selection bias corrected

PredPsych

Predictive Approaches in Psychology

predtoolsTS

Time Series Prediction Tools

prefeR

R Package for Pairwise Preference Elicitation

preference

2-Stage Preference Trial Design and Analysis

prefmod

Utilities to Fit Paired Comparison Models for Preferences

PreKnitPostHTMLRender

Pre-Knitting Processing and Post HTML-Rendering Processing

PReMiuM

Dirichlet Process Bayesian Clustering, Profile Regression

prepdat

Preparing Experimental Data for Statistical Analysis

prepplot

Prepare Figure Region for Base Graphics

PreProcess

Basic Functions for Pre-Processing Microarrays

preprocessCore

A collection of pre-processing functions

preprocomb

Tools for Preprocessing Combinations

preprosim

Lightweight Data Quality Simulation for Classification

preproviz

Tools for Visualization of Interdependent Data Quality Issues

PREPShiny

Interactive Document for Preprocessing the Dataset

preputils

Utilities for Preparation of Data Analysis

prereg

R Markdown Templates to Preregister Scientific Studies

PresenceAbsence

Presence-Absence Model Evaluation.

presens

Interface for PreSens Fiber Optic Data

preseqR

Predicting Species Accumulation Curves

PResiduals

Probability-Scale Residuals and Residual Correlations

preText

Diagnostics to Assess the Effects of Text Preprocessing Decisions

prettyB

Pretty Base Graphics

prettycode

Pretty Print R Code in the Terminal

prettydoc

Creating Pretty Documents from R Markdown

prettyGraphs

Publication-Quality Graphics

prettymapr

Scale Bar, North Arrow, and Pretty Margins in R

prettyR

Pretty Descriptive Stats

prettyunits

Pretty, Human Readable Formatting of Quantities

prevalence

Tools for Prevalence Assessment Studies

PrevMap

Geostatistical Modelling of Spatially Referenced Prevalence Data

prevR

Estimating Regional Trends of a Prevalence from a DHS

prevtoinc

Prevalence to Incidence Calculations for Point-Prevalence Studies in a Nosocomial Setting

pRF

Permutation Significance for Random Forests

priceR

Regular Expressions for Prices and Currencies

pricesensitivitymeter

Van Westendorp Price Sensitivity Meter Analysis

prim

Patient Rule Induction Method (PRIM)

primefactr

Use Prime Factorization for Computations

primer

Functions and data for A Primer of Ecology with R

primerTree

Visually Assessing the Specificity and Informativeness of Primer Pairs

primes

Generate and Test for Prime Numbers

primeviewcdf

primeviewcdf

primeviewprobe

Probe sequence data for microarrays of type primeview

PRIMME

Eigenvalues and Singular Values and Vectors from Large Matrices

PRIMsrc

PRIM Survival Regression Classification

princurve

Fits a Principal Curve in Arbitrary Dimension

prinsimp

Finding and plotting simple basis vectors for multivariate data

printr

Automatically Print R Objects to Appropriate Formats According to the 'knitr' Output Format

PriorCD

Prioritizing Cancer Drugs for Interested Cancer

PriorGen

Generates Prior Distributions for Proportions

prioritizr

Systematic Conservation Prioritization in R

prioritizrdata

Conservation Planning Data Sets

prioritylasso

Analyzing Multiple Omics Data with an Offset Approach

prism

Access Data from the Oregon State Prism Climate Project

PRISM.forecast

Penalized Regression with Inferred Seasonality Module - Forecasting Unemployment Initial Claims using 'Google Trends' Data

PRISMA

Protocol Inspection and State Machine Analysis

PRISMAstatement

Plot Flow Charts According to the "PRISMA" Statement

prisonbrief

Downloads and Parses World Prison Brief Data

prithulib

Perform Random Experiments

PrivateLR

Differentially Private Regularized Logistic Regression

Prize

Prize: an R package for prioritization estimation based on analytic hierarchy process

prLogistic

Estimation of Prevalence Ratios using Logistic Models

prnsamplr

Permanent Random Number Sampling

pro

Point-Process Response Model for Optogenetics

prob

Elementary Probability on Finite Sample Spaces

probably

Tools for Post-Processing Class Probability Estimates

proBAMr

Generating SAM file for PSMs in shotgun proteomics data

probemapper

Connects to QBRC's ProbeMapper platform

probemod

Statistical Tools for Probing Moderation Effects

ProbForecastGOP

Probabilistic weather forecast using the GOP method

probhat

Generalized Kernel Smoothing

ProbitSpatial

Probit with Spatial Dependence, SAR and SEM Models

probout

Unsupervised Multivariate Outlier Probabilities for Large Datasets

PROBShiny

Interactive Document for Working with Basic Probability

probsvm

probsvm: Class probability estimation for Support Vector Machines

ProbYX

Inference for the Stress-Strength Model R = P(Y<X)

pROC

Display and Analyze ROC Curves

proccalibrad

Extraction of Bands from MODIS Calibrated Radiances MOD02 NRT

PROcess

Ciphergen SELDI-TOF Processing

processanimateR

Process Map Token Replay Animation

processcheckR

Rule-Based Conformance Checking of Business Process Event Data

processcontrol

Statistical Process Control Charts

processdata

Process Data

processmapR

Construct Process Maps Using Event Data

processmonitR

Building Process Monitoring Dashboards

processR

Implementation of the 'PROCESS' Macro

processx

Execute and Control System Processes

procoil

Prediction of Oligomerization of Coiled Coil Proteins

ProCoNA

Protein co-expression network analysis (ProCoNA).

ProData

SELDI-TOF data of Breast cancer samples

ProDenICA

Product Density Estimation for ICA using tilted Gaussian density estimates

prodest

Production Function Estimation

prodigenr

Research Project Directory Generator

prodlim

Product-Limit Estimation for Censored Event History Analysis

productivity

Indices of Productivity Using Data Envelopment Analysis (DEA)

productplots

Product Plots for R

prof.tree

An Alternative Display Profiling Data as Tree Structure

profanal

Implements profile analysis described in Davison & Davenport (2002)

PROFANCY

The package can prioritize candidate disease metabolites based on global functional relationships between metabolites in the context of metabolic pathways

profdpm

Profile Dirichlet Process Mixtures

ProfessR

Grades Setting and Exam Maker

proFIA

Preprocessing of FIA-HRMS data

profile

Read, Manipulate, and Write Profiler Data

ProfileLikelihood

Profile Likelihood for a Parameter in Commonly Used Statistical Models

profileModel

Profiling Inference Functions for Various Model Classes

profileR

Profile Analysis of Multivariate Data in R

profileScoreDist

Profile score distributions

profilr

Quickly Profile Data in R

ProFit

Fit Projected 2D Profiles to Galaxy Images

profmem

Simple Memory Profiling for R

ProFound

Photometry Tools

profr

An Alternative Display for Profiling Information

proftools

Profile Output Processing Tools for R

profvis

Interactive Visualizations for Profiling R Code

progeny

Pathway RespOnsive GENes for activity inference from gene expression

progenyClust

Finding the Optimal Cluster Number Using Progeny Clustering

ProgGUIinR

support package for "Programming Graphical User Interfaces in R"

prognosticROC

Prognostic ROC curves for evaluating the predictive capacity of a binary test

progress

Terminal Progress Bars

proj4

A simple interface to the PROJ.4 cartographic projections library

ProjectionBasedClustering

Projection Based Clustering

projections

Project Future Case Incidence

ProjectManagement

Management of Deterministic and Stochastic Projects

projector

Project Dense Vectors Representation of Texts on a 2D Plan

projects

A Project Infrastructure for Researchers

ProjectTemplate

Automates the Creation of New Statistical Analysis Projects

projmanr

Project Management Tools

projpred

Projection Predictive Feature Selection

ProliferativeIndex

Calculates and Analyzes the Proliferative Index

pRoloc

A unifying bioinformatics framework for spatial proteomics

pRolocdata

Data accompanying the pRoloc package

pRolocGUI

Interactive visualisation of spatial proteomics data

PROMETHEE

Preference Ranking Organization METHod for Enrichment of Evaluations

PROMISE

PRojection Onto the Most Interesting Statistical Evidence

promises

Abstractions for Promise-Based Asynchronous Programming

promote

Client for the 'Alteryx Promote' API

promotionImpact

Analysis & Measurement of Promotion Effectiveness

ProNet

Biological Network Construction, Visualization and Analyses

prop.comb.RR

Analyzing Combination of Proportions and Relative Risk

propagate

Propagation of Uncertainty

PropCIs

Various Confidence Interval Methods for Proportions

PropClust

Propensity Clustering and Decomposition

PROPER

PROspective Power Evaluation for RNAseq

properties

Parse 'Java' Properties Files for 'R Service Bus' Applications

prophet

Automatic Forecasting Procedure

proportion

Inference on Single Binomial Proportion and Bayesian Computations

propOverlap

Feature (gene) selection based on the Proportional Overlapping Scores

propr

Calculating Proportionality Between Vectors of Compositional Data

PROPS

PRObabilistic Pathway Score (PROPS)

PropScrRand

Propensity score methods for assigning treatment in randomized trials

proPubBills

'ProPublica' U.S. Congress Bills API Wrapper

ProPublicaR

Access Functions for ProPublica's APIs

PROreg

Patient Reported Outcomes Regression Analysis

PROscorer

Functions to Score Commonly-Used Patient-Reported Outcome (PRO) Measures and Other Psychometric Instruments

PROscorerTools

Tools to Score Patient-Reported Outcome (PRO) and Other Psychometric Measures

prospectr

Miscellaneous functions for processing and sample selection of vis-NIR diffuse reflectance data

PROSPER

Simulation of Weed Population Dynamics

Prostar

Provides a GUI for DAPAR

prostateCancerCamcap

Prostate Cancer Data

prostateCancerGrasso

Prostate Cancer Data

prostateCancerStockholm

Prostate Cancer Data

prostateCancerTaylor

Prostate Cancer Data

prostateCancerVarambally

Prostate Cancer Data

prot2D

Statistical Tools for volume data from 2D Gel Electrophoresis

ProteinDescriptors

Generates Various Protein Descriptors for Machine Learning Algorithms

proteinProfiles

Protein Profiling

proteomicdesign

Optimization of a multi-stage proteomic study

proteomics

Statistical Analysis of High Throughput Proteomics Data

ProteomicsAnnotationHubData

Transform public proteomics data resources into Bioconductor Data Structures

proteoQC

An R package for proteomics data quality control

ProtGenerics

S4 generic functions for Bioconductor proteomics infrastructure

protiq

Protein (identification and) quantification based on peptide evidence

proto

Prototype Object-Based Programming

protoclass

Interpretable classification with prototypes

protoclust

Hierarchical Clustering with Prototypes

PROTOLIDAR

PRocess TOol LIdar DAta in R

protolite

Fast and Simple Object Serialization to Protocol Buffers

proton

The Proton Game

prototest

Inference on Prototypes from Clusters of Features

protr

Generating Various Numerical Representation Schemes for Protein Sequences

ProTrackR

Manipulate and Play 'ProTracker' Modules

protViz

Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics

proustr

Tools for Natural Language Processing in French

provenance

Statistical Toolbox for Sedimentary Provenance Analysis

provParseR

Pulls Information from Prov.Json Files

provSummarizeR

Summarizes Provenance Related to Inputs and Outputs of a Script or Console Commands

provViz

Provenance Visualizer

proxy

Distance and Similarity Measures

proxyC

Computes Proximity in Large Sparse Matrices

prozor

Minimal Protein Set Explaining Peptide Spectrum Matches

prrd

Parallel Runs of Reverse Depends

PRROC

Precision-Recall and ROC Curves for Weighted and Unweighted Data

PRSim

Stochastic Simulation of Streamflow Time Series using Phase Randomization

pRSR

Test of Periodicity using Response Surface Regression

pryr

Tools for Computing on the Language

Przewodnik

Datasets and Functions Used in the Book 'Przewodnik po Pakiecie R'

ps

List, Query, Manipulate System Processes

PSAboot

Bootstrapping for Propensity Score Analysis

PSAgraphics

Propensity Score Analysis Graphics

psbcGroup

Penalized Parametric and Semiparametric Bayesian Survival Models with Shrinkage and Grouping Priors

PSCBS

Analysis of Parent-Specific DNA Copy Numbers

pscl

Political Science Computational Laboratory

pscore

Standardizing Physiological Composite Risk Endpoints

psd

Adaptive, Sine-Multitaper Power Spectral Density Estimation

psda

Polygonal Symbolic Data Analysis

psData

Download Regularly Maintained Political Science Data Sets

pse

Parameter Space Exploration with Latin Hypercubes

PSEA

Population-Specific Expression Analysis.

pseudo

Computes Pseudo-Observations for Modeling

pseudorank

Pseudo-Ranks

pseval

Methods for Evaluating Principal Surrogates of Treatment Response

PSF

Forecasting of Univariate Time Series Using the Pattern Sequence-Based Forecasting (PSF) Algorithm

psfmi

Prediction Model Selection and Performance Evaluation in Multiple Imputed Datasets

PSGExpress

Portfolio Safeguard: Optimization, Statistics and Risk Management

psgp

Projected Spatial Gaussian Process Methods

pSI

Specificity Index Statistic

psica

Decision Tree Analysis for Probabilistic Subgroup Identification with Multiple Treatments

psichomics

Graphical Interface for Alternative Splicing Quantification, Analysis and Visualisation

PSICQUIC

Proteomics Standard Initiative Common QUery InterfaCe

psidR

Build Panel Data Sets from PSID Raw Data

PsiHat

Several Local False Discovery Rate Estimators

PSIMEX

SIMEX Algorithm on Pedigree Structures

PSLM2015

Pakistan Social and Living Standards Measurement Survey 2014-15

PSM

Non-Linear Mixed-Effects Modelling using Stochastic Differential Equations

PSMix

Population structure inference using mixture model

pso

Particle Swarm Optimization

psoptim

Particle Swarm Optimization

pspearman

Spearman's rank correlation test

pspline

Penalized Smoothing Splines

PSPManalysis

Analysis of Physiologically Structured Population Models

pssm

Piecewise Exponential Model for Time to Progression and Time from Progression to Death

pssmooth

Flexible and Efficient Evaluation of Principal Surrogates/Treatment Effect Modifiers

psSubpathway

Flexible Identification of Phenotype-Specific Subpathways

PST

Probabilistic Suffix Trees and Variable Length Markov Chains

Pstat

Assessing Pst Statistics

pstest

Specification Tests for Parametric Propensity Score Models

PSTR

Panel Smooth Transition Regression Modelling

PsumtSim

Simulations of grouped responses relative to baseline.

PSW

Propensity Score Weighting Methods for Dichotomous Treatments

psy

Various procedures used in psychometry

psych

Procedures for Psychological, Psychometric, and Personality Research

psychmeta

Psychometric Meta-Analysis Toolkit

psycho

Efficient and Publishing-Oriented Workflow for Psychological Science

psychometric

Applied Psychometric Theory

psychomix

Psychometric Mixture Models

psychonetrics

Structural Equation Modeling and Confirmatory Network Analysis

psychotools

Psychometric Modeling Infrastructure

psychotree

Recursive Partitioning Based on Psychometric Models

psychReport

Reproducible Reports in Psychology

psychTools

Tools to Accompany the 'psych' Package for Psychological Research

PsyControl

CUSUM Person Fit Statistics

psygenet2r

psygenet2r - An R package for querying PsyGeNET and to perform comorbidity studies in psychiatric disorders

psymonitor

Real Time Monitoring of Asset Markets: Bubbles and Crisis

psyosphere

Analyse GPS Data

psyphy

Functions for analyzing psychophysical data in R

psytabs

Produce Well-Formatted Tables for Psychological Research

pt

Computational models for prospect theory and other theories of risky decision making

PTAk

Principal Tensor Analysis on k Modes

PTE

Personalized Treatment Evaluator

pterrace

Persistence Terrace for Topological Data Analysis

ptest

Periodicity Tests in Short Time Series

PtH2O2lipids

P. tricornutum HPLC-ESI-MS Lipid Data from van Creveld et al. (2015)

ptinpoly

Point-In-Polyhedron Test (2D and 3D)

ptmixed

Poisson-Tweedie Generalized Linear Mixed Model

PtProcess

Time Dependent Point Process Modelling

pts2polys

Construct Polygons Summarising the Location and Variability of Point Sets

ptstem

Stemming Algorithms for the Portuguese Language

ptsuite

Tail Index Estimation for Power Law Distributions

ptw

Parametric Time Warping

ptwikiwords

Words Used in Portuguese Wikipedia

PTXQC

Quality Report Generation for MaxQuant Results

ptycho

Bayesian Variable Selection with Hierarchical Priors

PubBias

Performs simulation study to look for publication bias, using a technique described by Ioannidis and Trikalinos; Clin Trials. 2007;4(3):245-53.

pubchunks

Fetch Sections of XML Scholarly Articles

pubh

A Toolbox for Public Health and Epidemiology

PublicationBias

Sensitivity Analysis for Publication Bias in Meta-Analyses

Publish

Format Output of Various Routines in a Suitable Way for Reports and Publication

pubmed.mineR

Text Mining of PubMed Abstracts

PubMedWordcloud

'Pubmed' Word Clouds

pubprint

Printing Results of Statistical Computing in a Publishable Way

pubtatordb

Create and Query a Local 'PubTator' Database

PUlasso

High-Dimensional Variable Selection with Presence-Only Data

pullword

R Interface to Pullword Service

pulsar

Parallel Utilities for Lambda Selection along a Regularization Path

pulseTD

Identification of Transcriptional Dynamics using Pulse Models via 4su-Seq Data and RNA-Seq Data

pulver

Parallel Ultra-Rapid p-Value Computation for Linear Regression Interaction Terms

puma

Propagating Uncertainty in Microarray Analysis(including Affymetrix tranditional 3' arrays and exon arrays and Human Transcriptome Array 2.0)

pumadata

Various data sets for use with the puma package

pumilioR

Pumilio in R

puniform

Meta-Analysis Methods Correcting for Publication Bias

PUPAIM

'A Collection of Physical and Chemical Adsorption Isotherm Models'

PurBayes

Bayesian Estimation of Tumor Purity and Clonality

PureCN

Copy number calling and SNV classification using targeted short read sequencing

purge

Purge Training Data from Models

purging

Simple Method for Purging Mediation Effects among Independent Variables

purrr

Functional Programming Tools

purrrlyr

Tools at the Intersection of 'purrr' and 'dplyr'

purrrogress

Add Progress Bars to Mapping Functions

pushbar

Create Sliders for 'Shiny'

pushoverr

Send Push Notifications using Pushover

pvac

PCA-based gene filtering for Affymetrix arrays

PVAClone

Population Viability Analysis with Data Cloning

pvaluefunctions

Creates and Plots P-Value Functions, S-Value Functions, Confidence Distributions and Confidence Densities

pvar

Calculation and Application of p-Variation

pvca

Principal Variance Component Analysis (PVCA)

pvclass

P-Values for Classification

pvclust

Hierarchical Clustering with P-Values via Multiscale Bootstrap Resampling

Pviz

Peptide Annotation and Data Visualization using Gviz

PVR

Phylogenetic Eigenvectors Regression and Phylogentic Signal-Representation Curve

pvrank

Rank Correlations

pvsR

An R package to interact with the Project Vote Smart API for scientific research

PWD

Time Series Regression Using the Power Weighted Densities (PWD) Approach

PWEALL

Design and Monitoring of Survival Trials Accounting for Complex Situations

pweight

P-Value Weighting

PWFSLSmoke

Utilities for Working with Air Quality Monitoring Data

PWMEnrich

PWM enrichment analysis

PWMEnrich.Dmelanogaster.background

D. melanogaster background for PWMEnrich

PWMEnrich.Hsapiens.background

H. sapiens background for PWMEnrich

PWMEnrich.Mmusculus.background

M. musculus background for PWMEnrich

pwOmics

Pathway-based data integration of omics data

pwr

Basic Functions for Power Analysis

pwr2

Power and Sample Size Analysis for One-way and Two-way ANOVA Models

pwr2ppl

Power Analyses for Common Designs (Power to the People)

pwrAB

Power Analysis for AB Testing

pwrFDR

FDR Power

PwrGSD

Power in a Group Sequential Design

pwrRasch

Statistical Power Simulation for Testing the Rasch Model

pwt

Penn World Table (Versions 5.6, 6.x, 7.x)

pwt8

Penn World Table (Version 8.x)

pwt9

Penn World Table (Version 9.x)

pxR

PC-Axis with R

pxweb

R Interface to PXWEB APIs

PxWebApiData

PX-Web Data by API

pycno

Pycnophylactic Interpolation

pyinit

Pena-Yohai Initial Estimator for Robust S-Regression

pyramid

Functions to draw population pyramid

pystr

Python String Methods in R

PythonInR

Use 'Python' from Within 'R'

pzfx

Read and Write 'GraphPad Prism' Files