Methods for Detecting Safety Signals in Clinical Trials Using Body-Systems (System Organ Classes)
Analysis of CAGE (Cap Analysis of Gene Expression) sequencing data for precise mapping of transcription start sites and promoterome mining
R graphics device using cairo graphics library for creating high-quality bitmap (PNG, JPEG, TIFF), vector (PDF, SVG, PostScript) and display (X11 and Win32) output
Camera Trap Data Management and Preparation of Occupancy and Spatial Capture-Recapture Analyses
Development and validation of diagnostic tests from high-dimensional molecular data: Datasets
Accessing Intra-Tumor Heterogeneity and Tracking Longitudinal and Spatial Clonal Evolutionary History by Next-Generation Sequencing
Estimation of caribou abundance based on large scale aggregations monitored by radio telemetry
Reparameterized and marginalized posterior sampling for conditional autoregressive models, OpenCL implementation
Deriving Expressions of Joint Interventional Distributions and Transport Formulas in Causal Models
Collection of Functions for Processing, Visualizing and Analyzing Cambial Activity and Wood Formation Monitoring Data
Clustering of Multivariate Binary Data with Dimension Reduction via L1-Regularized Likelihood Maximization
Coupled-Dipole Approximation for Electromagnetic Scattering by Three-Dimensional Clusters of Sub-Wavelength Particles
Evaluate Differentially Private Algorithms for Publishing Cumulative Distribution Functions
Benchmark functions for the Special Session and Competition on Real-Parameter Single Objective Optimization at CEC-2013
Training of boolean logic models of signalling networks using prior knowledge networks and perturbation data.
Functions to fit cell volume distributions and thereby estimate cell growth rates and division times
Calculate AUC-type measure when gold standard is continuous and the corresponding optimal linear combination of variables with respect to it.
Chemometrics with R - Multivariate Data Analysis in the Natural Sciences and Life Sciences
Batch annotation of the peaks identified from either ChIP-seq, ChIP-chip experiments or any experiments resulted in large number of chromosome ranges
ChIPXpress: enhanced transcription factor target gene identification from ChIP-seq and ChIP-chip data using publicly available gene expression profiles
chromDraw is a R package for drawing the schemes of karyotypes in the linear and circular fashion.
A framework for two-class classification problems, with applications to differential variability and differential distribution testing
This package classifies putative polyadenylation sites as true or false/internally oligodT primed
Climate analysis and empirical-statistical downscaling (ESD) package for monthly and daily data.
Lasso Estimation of Conditional Logistic Regression Models for Matched Case-Control Studies
Calculate the consensus clustering result from re-sampled clustering experiments with the option of using multiple algorithms and parameter
Optimal Distance-Based Clustering for Multidimensional Data with Sequential Constraint
statistical analysis and visualization of functional profiles for genes and gene clusters
Investigates Significance of Clusters by Reducing the Data to One Dimension to be Able to Easy Set a Score for the Separation, and a p-Value is then Calculated from Permutations of the Original Data
Assessment of Stability of Individual Objects or Clusters in Partitioning Solutions
Convert segment data into a region by sample matrix to allow for other high level computational analyses.
CNVrd2: a read depth-based method to detect and genotype complex common copy number variants from next generation sequencing data.
Plot and add custom coloring to Venn diagrams for 2-dimensional, 3-dimensional and 4-dimensional data.
A 'ggplot2' Extension to Visualize Two Variables per Color Aesthetic Through Color Space Projections
coMET: visualisation of regional epigenome-wide association scan (EWAS) results and DNA co-methylation patterns
Extract and plot common trends from a cointegration system. Calculate P-value for Johansen Statistics.
RNAseq data simulation, differential expression analysis and performance comparison of differential expression methods
An R pipeline for .bed file annotation, statistical comparison of GO term enrichment between gene sets and data visualisation
Numerically Evaluate Integrals and Derivatives (also Higher Order) of Vector- And Complex-Valued Functions
Estimation, Gene Selection, and Survival Prediction Based on the Compound Covariate Method Under the Cox Proportional Hazard Model
Algorithms for Fitting Circles, Ellipses and Conics Based on the Work by Prof. Nikolai Chernov
A Tool for Reproducible Research by Converting 'LaTeX' Files Generated by R Sweave to Rich Text Format Files
Detection of consensus regions inside a group of experiences using genomic positions and genomic ranges
Constrained, Covariance-Matching Constrained and Universal Point or Block Kriging
Model-Based Clustering and Classification with the Multivariate Contaminated Normal Distribution
Copula Mixed Effect Models for Bivariate and Trivariate Meta-Analysis of Diagnostic Test Accuracy Studies
Segmentation of single- and multi-track copy number data by penalized least squares regression.
Record Linkage, Incorporating Imputation for Missing Agreement Patterns, and Modeling Correlation Patterns Between Fields
Estimate Correlations Between Repeatedly Measured Endpoints (E.g., Reliability) Based on Linear Mixed-Effects Models
Find the maximum likelihood estimator of the shape constrained hazard baseline and the effect parameters in the Cox proportional hazards model
Probabilistic damage tolerance analysis for fatigue cracking of metallic aerospace structures
Genotype Calling (CRLMM) and Copy Number Analysis tool for Affymetrix SNP 5.0 and 6.0 and Illumina arrays.
A Partial Clustering Algorithm with Automatic Estimation of the Number of Clusters and Identification of Outliers
Analysis, exploration, manipulation, and visualization of Cufflinks high-throughput sequencing data.
The package will formally test two curves represented by discrete data sets to be statistically equal or not when the errors of the two curves were assumed either equal or not using the tube formula to calculate the tail probabilities.
Customized Training for Lasso and Elastic-Net Regularized Generalized Linear Models
Generate customized protein database from NGS data, with a focus on RNA-Seq data, for proteomics search.
An R package to perform LPUE standardization and stock assessment of the English Channel cuttlefish stock using a two-stage biomass model
Penalized Logistic Regression Model using Majorization Minimization by Coordinate Descent (MMCD) Algorithm
Query 'Team Cymru' 'IP' Address, Autonomous System Number ('ASN'), Border Gateway Protocol ('BGP'), Bogon and 'Malware' Hash Data Services