3CPET: Finding Co-factor Complexes in Chia-PET experiment using a Hierarchical Dirichlet Process
Affymetrix ragene10 annotation data (chip ragene10sttranscriptcluster)
Affymetrix ragene11 annotation data (chip ragene11sttranscriptcluster)
Affymetrix ragene20 annotation data (chip ragene20sttranscriptcluster)
Affymetrix ragene21 annotation data (chip ragene21sttranscriptcluster)
Data Fusion Filters for Attitude Heading Reference System (AHRS) with Several Variants of the Kalman Filter and the Mahoney and Madgwick Filters
Occurrence Filtering, Geographic and Taxonomic Standardization and Generation of Species Range Polygons
Rank Product method for identifying differentially expressed genes with application in meta-analysis
Identification and Assessment of Single Nucleotide Variants through Shifts in Non-Consensus Base Call Frequencies
Alternative Bootstrap-Based t-Test Aiming to Reduce Type-I Error for Non-Negative, Zero-Inflated Data
R-based analysis of ChIP-seq And Differential Expression - a tool for integrating a count-based ChIP-seq analysis with differential expression summary data
A package for survival time prediction based on a piecewise baseline hazard Cox regression model.
Chess Move, Generation/Validation, Piece Placement/ Movement, and Check/Checkmate/Stalemate Detection
RcisTarget motif databases for human (hg19) - Subset of 4.6k motifs
RClimMAWGEN (R Climate Index Multi-site Auto-regressive Weather GENeretor): a package to generate time series of climate indices from RMAWGEN generations.
R Commander Plug-in for Fuzzy Clustering Methods (Fuzzy C-Means and Gustafson Kessel)
Improved Foreign Function Interface (FFI) and Dynamic Bindings to C Libraries (e.g. OpenGL)
Automated access to old World Fertility Survey data saved in fixed-width format based on ISI-formatted codebooks.
Gene and Splice Site Annotation Using Annotation Data from Ensembl and UCSC Genome Browsers
A function set for the Extrapolation Strategy (RMA+) and Extrapolation Averaging (RMA++) methods.
Expander Functions for Generating Full Gradient and Hessian from Single-Slot and Multi-Slot Base Distributions
Functions for Mapping Key-Value Pairs, Many-to-Many, One-to-Many, and Many-to-One Relations
Reordering and/or Reflecting Factors for Simulation Studies with Exploratory Factor Analysis
Access matrix-like HDF5 server content or BigQuery content through a SummarizedExperiment interface
Companion package to the 'Using R and Bioconductor for proteomics data analysis' publication
Hierarchical Modeling and Frequency Method Checking on Overdispersed Gaussian, Poisson, and Binomial Data
Normalized gene expression dataset published by Wollbold et al.  (WOLLBOLD).
Retrieves altmetrics from ImpactStory. See http://impactstory.org for more about the metrics.
RIPSeeker: a statistical package for identifying protein-associated transcripts from RIP-seq experiments
Risk Regression Models and Prediction Scores for Survival Analysis with Competing Risks
Modeling, Analysis, Validation and Visualization of Observer Performance Studies in Diagnostic Radiology
Bayesian hierarchical model for genome-wide nucleosome positioning with high-throughput short-read data (MNase-Seq)
Estimates, Plots and Evaluates Leaf Angle Distribution Functions, Calculates Extinction Coefficients
Continuous Optimization using Memetic Algorithms with Local Search Chains (MA-LS-Chains) in R
Supervised, Unsupervised, Semi-Supervised Classification with MIXture MODelling (Interface of MIXMOD Software)
Rounded Mixture Package. Performs Probability Mass Function Estimation with Nonparametric Mixtures of Rounded Kernels
RMRAINGEN (R Multi-site RAINfall GENeretor): a package to generate daily time series of rainfall from monthly mean values
Agilent Chips that use Agilent design number 028282 annotation data (chip RnAgilentDesign028282)
Mapping of Signalling Networks through Synthetic Genetic Interaction Analysis by RNAi
Aligned reads from RNAseq experiment: Transcription profiling by high throughput sequencing of HNRNPC knockdown and control HeLa cells
Gene-level RNA-seq differential expression and pathway analysis using Rsubread and the edgeR quasi-likelihood pipeline
Fast Network Modularity and Roles Computation by Simulated Annealing (Rgraph C Library Wrapper for R)
Tools for Analyzing Content Homogeneity and News Diffusion using Computational Text Analysis
Truncated Maximum Likelihood Fit and Robust Accelerated Failure Time Regression for Gaussian and Log-Weibull Case
Robust Mixture Modeling Fitted via Spatial-EM Algorithm for Model-Based Clustering and Outlier Detection
Construction of diagnostic or prognostic scoring system and internal validation of its discriminative capacities based on ROC curve and 0.633+ boostrap resampling.
'Multi-Solution' Binary Linear Problem Plug-in for the 'R' Optimization Interface
Nonlinear Root Finding, Equilibrium and Steady-State Analysis of Ordinary Differential Equations
Tools for parsing and manipulating rpart objects, including generating machine readable rules.
Fast Simulation of Normal/Exponential Random Variables and Stochastic Differential Equations / Poisson Processes
Sample Size Computations Controlling the Type-II Generalized Family-Wise Error Rate
Predefined Bayes models fitted with Markov chain Monte Carlo (MCMC) (related to the 'rrisk' project)
Builds Empirical Remote Sensing Models of Water Quality Variables and Analyzes Long-Term Trends
Estimating the Proportion of Genetically Modified Seeds in Seedlots via Multinomial Group Testing
rSFFreader reads in sff files generated by Roche 454 and Life Sciences Ion Torrent sequencers
Gini methodology-based correlation and clustering analysis of microarray and RNA-Seq gene expression data
Conversion Between Attitude Representations of DCM, Euler Angles, Quaternions, and Euler Vectors
Statistical Downscaling Toolkit for Climate Change Scenario using Non Parametric Quantile Mapping
Robust Estimation of the Proportion of Treatment Effect Explained by Surrogate Marker Information
Interface Utilities, Model Templates, Parallel Computing Methods and Additional Distributions for MCMC Models in JAGS
Calling haplotype-based and variant-based pedigree disequilibrium test for rare variants in pedigrees.
Codelink Rat Whole Genome Bioarray (~34 000 rat gene targets) annotation data (chip rwgcod)