Renjin.org | Packages

Utilities to compute, compare, and plot the agreement between ordered vectors of features (ie. distinct genomic experiments). The package includes Correspondence-At-the-TOP (CAT) analysis.

Matching

Multivariate and Propensity Score Matching with Balance Optimization

MatchingFrontier

Computation of the Balance - Sample Size Frontier in Matching Methods for Causal Inference

MatchIt

Nonparametric Preprocessing for Parametric Causal Inference

MatchItSE

Calculates SE for Matched Samples from 'MatchIt'

MatchLinReg

Combining Matching and Linear Regression for Causal Inference

matchMulti

Optimal Multilevel Matching using a Network Algorithm

matconv

A Code Converter from the Matlab/Octave Language to R

mateable

Tools to Assess Mating Potential in Space and Time

mathpix

Support for the 'Mathpix' API (Image to 'LaTeX')

maticce

Mapping Transitions in Continuous Character Evolution

matie

Measuring Association and Testing Independence Efficiently

matlabr

An Interface for MATLAB using System Calls

matlib

Matrix Functions for Teaching and Learning Linear Algebra and Multivariate Statistics

MatManlyMix

Matrix Clustering with Gaussian and Manly Mixture Models

Matrix

Sparse and Dense Matrix Classes and Methods

Matrix.utils

Data.frame-Like Operations on Sparse and Dense Matrix Objects

matrixcalc

Collection of functions for matrix calculations

MatrixEQTL

Matrix eQTL: Ultra Fast eQTL Analysis via Large Matrix Operations

MatrixLDA

Penalized Matrix-Normal Linear Discriminant Analysis

MatrixModels

Modelling with Sparse And Dense Matrices

matrixpls

Matrix-Based Partial Least Squares Estimation

MatrixRider

Obtain total affinity and occupancies for binding site matrices on a given sequence

matrixsampling

Simulations of Matrix Variate Distributions

matrixStats

Functions that Apply to Rows and Columns of Matrices (and to Vectors)

matrixTests

Fast Statistical Hypothesis Tests on Rows and Columns of Matrices

matter

A framework for rapid prototyping with binary data on disk

MATTOOLS

Modern Calibration Functions for the Modern Analog Technique (MAT)

MatTransMix

Clustering with Matrix Gaussian and Matrix Transformation Mixture Models

mau

Decision Models with Multi Attribute Utility Theory

MAVTgsa

Three methods to identify differentially expressed gene sets, ordinary least square test, Multivariate Analysis Of Variance test with n contrasts and Random forest.

MaXact

Exact max-type Cochran-Armitage trend test(CATT)

MaxContrastProjection

Perform a maximum contrast projection of 3D images along the z-dimension into 2D

maxent

Low-memory Multinomial Logistic Regression with Support for Text Classification

MaxentVariableSelection

Selecting the Best Set of Relevant Environmental Variables along with the Optimal Regularization Multiplier for Maxent Niche Modeling

maximin

Space-Filling Design under Maximin Distance

maxLik

Maximum Likelihood Estimation and Related Tools

maxlike

Model Species Distributions by Estimating the Probability of Occurrence Using Presence-Only Data

maxmatching

Maximum Matching for General Weighted Graph

maxnet

Fitting 'Maxent' Species Distribution Models with 'glmnet'

MaxSkew

Orthogonal Data Projections with Maximal Skewness

MazamaSpatialUtils

Spatial Data Download and Utility Functions

MazamaWebUtils

Utility Functions for Building Web Databrowsers

mazeinda

Monotonic Association on Zero-Inflated Data

MBAmethyl

Model-based analysis of DNA methylation data

MBASED

Package containing functions for ASE analysis using Meta-analysis Based Allele-Specific Expression Detection

mbbefd

Maxwell Boltzmann Bose Einstein Fermi Dirac Distribution and Destruction Rate Modelling

MBC

Multivariate Bias Correction of Climate Model Outputs

MBCB

MBCB (Model-based Background Correction for Beadarray)

MBCbook

Companion Package for the Book "Model-Based Clustering and Classification for Data Science" by Bouveyron et al. (2019, ISBN:9781108644181).

mbest

Moment-Based Estimation for Hierarchical Models

MBHdesign

Spatial Designs for Ecological and Environmental Surveys

MBI

(M)ultiple-site (B)iodiversity (I)ndices Calculator

MBmca

Nucleic Acid Melting Curve Analysis on Microbead Surfaces with R

mbmdr

Model Based Multifactor Dimensionality Reduction

mboxr

Reading, Extracting, and Converting an Mbox File into a Tibble

mBPCR

Bayesian Piecewise Constant Regression for DNA copy number estimation

mbrglm

Median Bias Reduction in Binomial-Response GLMs

MBSGS

Multivariate Bayesian Sparse Group Selection with Spike and Slab

MBSP

Multivariate Bayesian Model with Shrinkage Priors

MBTAr

Access Data from the Massachusetts Bay Transit Authority (MBTA) Web API

mBvs

Bayesian Variable Selection Methods for Multivariate Data

mc.heterogeneity

A Monte Carlo Based Heterogeneity Test for Meta-Analysis

mc2d

Tools for Two-Dimensional Monte-Carlo Simulations

MC2toPath

Translates information from netcdf files with MC2 output into inter-PVT transitions.

MCAvariants

Multiple Correspondence Analysis Variants

mcBFtest

Monte Carlo Based Tests for the Behrens Fisher Problem as an Alternative to Welch's t-Approximation

MCbiclust

Massive correlating biclusters for gene expression data and associated methods

mcbiopi

Matrix Computation Based Identification of Prime Implicants

mccf1

Creates the MCC-F1 Curve and Calculates the MCC-F1 Metric and the Best Threshold

mccmeiv

Analysis of Matched Case Control Data with a Mismeasured Exposure that is Accompanied by Instrumental Variables

MCDA

Support for the Multicriteria Decision Aiding Process

MCDM

Multi-Criteria Decision Making Methods for Crisp Data

mcemGLM

Maximum Likelihood Estimation for Generalized Linear Mixed Models

mcga

Machine Coded Genetic Algorithms for Real-Valued Optimization Problems

mcgfa

Mixtures of Contaminated Gaussian Factor Analyzers

mcgibbsit

Warnes and Raftery's MCGibbsit MCMC diagnostic

mcglm

Multivariate Covariance Generalized Linear Models

mcGlobaloptim

Global optimization using Monte Carlo and Quasi Monte Carlo simulation

MChtest

Monte Carlo Hypothesis Tests with Sequential Stopping

MCI

Multiplicative Competitive Interaction (MCI) Model

MCI2

Market Area Models for Retail and Service Locations

mcIRT

IRT models for multiple choice items (mcIRT)

mclcar

Estimating Conditional Auto-Regressive (CAR) Models using Monte Carlo Likelihood Methods

mclust

Gaussian Mixture Modelling for Model-Based Clustering, Classification, and Density Estimation

MCMC.OTU

Bayesian Analysis of Multivariate Counts Data in DNA Metabarcoding and Ecology

MCMC4Extremes

Posterior Distribution of Extreme Value Models in R

mcmcabn

Flexible Implementation of a Structural MCMC Sampler for DAGs

MCMChybridGP

Hybrid Markov chain Monte Carlo using Gaussian Processes

MCMCprecision

Precision of Discrete Parameters in Transdimensional MCMC

MCMCtreeR

Prepare MCMCtree Analyses and Plot Bayesian Divergence Time Analyses Estimates on Trees

MCMCvis

Tools to Visualize, Manipulate, and Summarize MCMC Output

mcMST

A Toolbox for the Multi-Criteria Minimum Spanning Tree Problem

mco

Multiple criteria optimization algorithms and related functions

mcompanion

Objects and Methods for Multi-Companion Matrices

MConjoint

Conjoint Analysis through Averaging of Multiple Analyses

mcPAFit

Estimating Preferential Attachment from a Single Network Snapshot by Markov Chain Monte Carlo

MCPAN

Multiple Comparisons Using Normal Approximation

mcparallelDo

A Simplified Interface for Running Commands on Parallel Processes

McParre

Run a Regenerative Markov chain in Parallel on a Cluster

mcpd

Tools to analyse and use passport data for biological collections.

MCPerm

A Monte Carlo permutation method for multiple test correlation

MCPMod

Design and Analysis of Dose-Finding Studies

mcprofile

Testing Generalized Linear Hypotheses for Generalized Linear Model Parameters by Profile Deviance

MCRestimate

Misclassification error estimation with cross-validation

MCSim

Determine the Optimal Number of Clusters

mcsm

Functions for Monte Carlo Methods with R

mcStats

Visualize Results of Statistical Hypothesis Tests

MCUSUM

Multivariate Cumulative Sum (MCUSUM) Control Chart

md

Selecting Bandwidth for Kernel Density Estimator with Minimum Distance Method

md.log

Produces Markdown Log File with a Built-in Function Call

mda

Mixture and Flexible Discriminant Analysis

mDAG

Inferring Causal Network from Mixed Observational Data Using a Directed Acyclic Graph

mdatools

Multivariate Data Analysis for Chemometrics

mded

Measuring the Difference Between Two Empirical Distributions

mdendro

Variable-Group Methods for Agglomerative Hierarchical Clustering

mdhglm

Multivariate Double Hierarchical Generalized Linear Models

MDimNormn

Multi-Dimensional MA Normalization for Plate Effect

mdp

Molecular Degree of Perturbation calculates scores for transcriptome data samples based on their perturbation from controls

mdpeer

Graph-Constrained Regression with Enhanced Regularization Parameters Selection

mdqc

Mahalanobis Distance Quality Control for microarrays

Converts mdr files (markdown with support for R code) into markdown, html, or pdf. This Renjin extension (package) is similar to rmd files with the difference that there is no knitting. The R syntax snippets should return markdown code, i.e. no "magic" conversions. This gives you better control of the output.

MDR

Detect gene-gene interactions using multifactor dimensionality reduction

mdr2html

This is a Renjin extension (package) that converts mdr files (markdown with support for R code) into html. It is similar to rmd files with the difference that there is no knitting. The R syntax snippets should return markdown code, i.e. no "magic" conversions. This gives you better control of the output. The mdr file is converted to a html file.

mds

Medical Devices Surveillance

mdscore

Improved Score Tests for Generalized Linear Models

mdsdt

Functions for Analysis of Data with General Recognition Theory

MDSGUI

A GUI for interactive MDS in R

MDSMap

High Density Genetic Linkage Mapping using Multidimensional Scaling

mdsOpt

Searching for Optimal MDS Procedure for Metric and Interval-Valued Data

MDSPCAShiny

Interactive Document for Working with Multidimensional Scaling and Principal Component Analysis

mdsr

Complement to 'Modern Data Science with R'

mdsstat

Statistical Trending for Medical Devices Surveillance

MDTS

Detection of de novo deletion in targeted sequencing trios

mdw

Maximum Diversity Weighting

MEAL

Perform methylation analysis

MEALData

Example data of MEAL package

meanr

Sentiment Analysis Scorer

MeanShift

Clustering via the Mean Shift Algorithm

meanShiftR

A Computationally Efficient Mean Shift Implementation

meaRtools

Micro-Electro Array (MEA) Analysis

MeasurementError.cor

Measurement Error model estimate for correlation coefficient

measurements

Tools for Units of Measurement

measures

Performance Measures for Statistical Learning

measuRing

Detection and Control of Tree-Ring Widths on Scanned Image Sections

meboot

Maximum Entropy Bootstrap for Time Series

MEclustnet

Fitting the Mixture of Experts Latent Position Cluster Model to Network Data

MED

Mediation by Tilted Balancing

medAdherence

Medication Adherence: Commonly Used Definitions

MedDietCalc

Multi Calculator to Compute Scores of Adherence to Mediterranean Diet

MedDietScore

Scores of Adherence to Mediterranean Diet and Other Tools for Nutriepidemiological Research

mederrRank

Bayesian Methods for Identifying the Most Harmful Medication Errors

medfate

Mediterranean Forest Simulation

medflex

Flexible Mediation Analysis Using Natural Effect Models

MediaK

Calculate MeDiA_K Distance

Mediana

Clinical Trial Simulations

mediation

Causal Mediation Analysis

medicagocdf

medicagoprobe

Probe sequence data for microarrays of type medicago

medicalrisk

Medical Risk and Comorbidity Tools for ICD-9-CM Data

medicare

Tools for Obtaining and Cleaning Medicare Public Use Files

MeDiChI

MeDiChI ChIP-chip deconvolution library

MEDIPS

DNA IP-seq data analysis

MEDIPSData

Example data for MEDIPS and QSEA packages

meditations

Prints a Random Quote from Marcus Aurelius' Book Meditations

MEDME

Modelling Experimental Data from MeDIP Enrichment

medmod

Simple Mediation and Moderation Analysis

MedOr

Median Ordering Statistical R package

medSTC

A max-margin supervised Sparse Topical Coding Model

MedSurvey

Mediation Analysis for Complex Surveys

MEEBOdata

MEEBO set and MEEBO controls.

MEET

MEET: Motif Elements Estimation Toolkit

meetupapi

Access 'Meetup' API

mefa

Multivariate Data Handling in Ecology and Biogeography

mefa4

Multivariate Data Handling with S4 Classes and Sparse Matrices

Mega2R

Accessing and Processing a 'Mega2' Genetic Database

megaptera

MEGAPhylogeny Techniques in R

MEGENA

Multiscale Clustering of Geometrical Network

meifly

Interactive model exploration using GGobi

MEIGOR

MEIGO - MEtaheuristics for bIoinformatics Global Optimization

Meiosis

Simulation of Meiosis in Plant Breeding Research

mekko

Variable Width Bar Charts: Bar Mekko

melody

Statistical Methods for the Quantitative Analysis of Song Spectrograms

meltt

Matching Event Data by Location, Time and Type

melviewr

View and Classify MELODIC Output for ICA+FIX

mem

The Moving Epidemic Method

memapp

The Moving Epidemic Method Web Application

meme

Create Meme

memery

Internet Memes for Data Analysts

memgene

Spatial Pattern Detection in Genetic Distance Data Using Moran's Eigenvector Maps

memisc

Management of Survey Data and Presentation of Analysis Results

memnet

Network Tools for Memory Research

memo

In-Memory Caching for Repeated Computations

memoise

Memoisation of Functions

memor

A 'rmarkdown' Template that Can be Highly Customized

memoria

Quantifying Ecological Memory in Palaeoecological Datasets and Other Long Time-Series

MEMSS

Data Sets from Mixed-Effects Models in S

memuse

Memory Estimation Utilities

MendelianRandomization

Mendelian Randomization Package

MEPDF

Creation of Empirical Density Functions Based on Multivariate Data

mephas

Shiny Application of Medical and Pharmaceutical Statistics

merDeriv

Case-Wise and Cluster-Wise Derivatives for Mixed Effects Models

mergedblocks

Merged Block Randomization

MergeGUI

A GUI for Merging Datasets in R

MergeMaid

Merge Maid

Mergeomics

Integrative network analysis of omics data

merlin

Mixed Effects Regression for Linear, Non-Linear and User-Defined Models

merror

Accuracy and Precision of Measurements

merTools

Tools for Analyzing Mixed Effect Regression Models

MeSH.Aca.eg.db

Mapping table for Anolis carolinensis Gene ID to MeSH

MeSH.Aga.PEST.eg.db

Mapping table for Anopheles gambiae str. PEST Gene ID to MeSH

MeSH.Ame.eg.db

Mapping table for Ailuropoda melanoleuca Gene ID to MeSH

MeSH.Aml.eg.db

Mapping table for Apis mellifera Gene ID to MeSH

MeSH.Ana.eg.db

Mapping table for Filamentos cyanobacteria Gene ID to MeSH

MeSH.Ani.FGSC.eg.db

Mapping table for Aspergillus nidulans FGSC A4 Gene ID to MeSH

MeSH.AOR.db

A set of annotation maps describing the entire MeSH

MeSH.Ath.eg.db

Mapping table for Arabidopsis thaliana Gene ID to MeSH

MeSH.Atu.K84.eg.db

Mapping table for Agrobacterium Tumefaciens K84 Gene ID to MeSH

MeSH.Bfl.eg.db

Mapping table for Branchiostoma floridae Gene ID to MeSH

MeSH.Bsu.168.eg.db

Mapping table for Bacillus subtilis subsp. spizizenii str. 168 Gene ID to MeSH

MeSH.Bsu.TUB10.eg.db

Mapping table for Bacillus subtilis subsp. spizizenii str. TU-B-10 Gene ID to MeSH

MeSH.Bta.eg.db

Mapping table for Bos taurus Gene ID to MeSH

MeSH.Cal.SC5314.eg.db

Mapping table for Candida albicans SC5314 Gene ID to MeSH

MeSH.Cbr.eg.db

Mapping table for Caenorhabditis briggsae Gene ID to MeSH

MeSH.Cel.eg.db

Mapping table for Caenorhabditis elegans Gene ID to MeSH

MeSH.Cfa.eg.db

Mapping table for Canis familiaris Gene ID to MeSH

MeSH.Cin.eg.db

Mapping table for Ciona intestinalis Gene ID to MeSH

MeSH.Cja.eg.db

Mapping table for Callithrix jacchus Gene ID to MeSH

MeSH.Cpo.eg.db

Mapping table for Cavia porcellus Gene ID to MeSH

MeSH.Cre.eg.db

Mapping table for Caenorhabditis remani Gene ID to MeSH

MeSH.Dan.eg.db

Mapping table for Drosophila ananassae Gene ID to MeSH

MeSH.db

A set of annotation maps describing the entire MeSH

MeSH.Dda.3937.eg.db

Mapping table for Dickeya dadantii 3937 Gene ID to MeSH

MeSH.Ddi.AX4.eg.db

Mapping table for Dictyostelium discoideum AX4 Gene ID to MeSH

MeSH.Der.eg.db

Mapping table for Drosophila eracta Gene ID to MeSH

MeSH.Dgr.eg.db

Mapping table for Drosophila grimshawi Gene ID to MeSH

MeSH.Dme.eg.db

Mapping table for Drosophila melanogaster Gene ID to MeSH

MeSH.Dmo.eg.db

Mapping table for Drosophila mojavensis Gene ID to MeSH

MeSH.Dpe.eg.db

Mapping table for Drosophila persimilis Gene ID to MeSH

MeSH.Dre.eg.db

Mapping table for Danio rerio Gene ID to MeSH

MeSH.Dse.eg.db

Mapping table for Drosophila sechellia Gene ID to MeSH

MeSH.Dsi.eg.db

Mapping table for Drosophila simulans Gene ID to MeSH

MeSH.Dvi.eg.db

Mapping table for Drosophila virllis Gene ID to MeSH

MeSH.Dya.eg.db

Mapping table for Drosophila yakuba Gene ID to MeSH

MeSH.Eco.55989.eg.db

Mapping table for Escherichia coli 55989 Gene ID to MeSH

MeSH.Eco.CFT073.eg.db

Mapping table for Esicherichia coli CFT073 Gene ID to MeSH

MeSH.Eco.ED1a.eg.db

Mapping table for Escherichia coli ED1a Gene ID to MeSH

MeSH.Eco.HS.eg.db

Mapping table for Escherichia coli HS Gene ID to MeSH

MeSH.Eco.IAI1.eg.db

Mapping table for Escherichia coli IAI1 Gene ID to MeSH

MeSH.Eco.IAI39.eg.db

Mapping table for Escherichia coli IAI39 Gene ID to MeSH

MeSH.Eco.K12.DH10B.eg.db

Mapping table for Escherichia coli str K-12 substr. DH10B Gene ID to MeSH

MeSH.Eco.K12.MG1655.eg.db

Mapping table for Escherichia coli str K-12 substr. MG1655 Gene ID to MeSH

MeSH.Eco.O127.H6.E2348.69.eg.db

Mapping table for Escherichia coli O127:H6 str. 2348_69 Gene ID to MeSH

MeSH.Eco.O157.H7.EDL933.eg.db

Mapping table for Escherichia coli O157:H7 str. EDL933 Gene ID to MeSH

MeSH.Eco.O157.H7.Sakai.eg.db

Mapping table for Escherichia coli O157:H7 Sakai Gene ID to MeSH

MeSH.Eco.S88.eg.db

Mapping table for Escherichia coli S88 Gene ID to MeSH

MeSH.Eco.UMN026.eg.db

Mapping table for Escherichia coli UMN026 Gene ID to MeSH

MeSH.Eqc.eg.db

Mapping table for Equus caballus Gene ID to MeSH

MeSH.Gga.eg.db

Mapping table for Gallus gallus Gene ID to MeSH

MeSH.Gma.eg.db

Mapping table for Glycine max Gene ID to MeSH

MeSH.Hsa.eg.db

Mapping table for Homo sapiens Gene ID to MeSH

MeSH.Laf.eg.db

Mapping table for Loxodonta africana Gene ID to MeSH

MeSH.Lma.eg.db

Mapping table for Leishmania major strain Friedlin Gene ID to MeSH

MeSH.Mdo.eg.db

Mapping table for Monodelphis domestica Gene ID to MeSH

MeSH.Mes.eg.db

Mapping table for NA Gene ID to MeSH

MeSH.Mga.eg.db

Mapping table for Meleagris gallopavo Gene ID to MeSH

MeSH.Miy.eg.db

Mapping table for Lotus japonicus Gene ID to MeSH

MeSH.Mml.eg.db

Mapping table for Macaca mulatta Gene ID to MeSH

MeSH.Mmu.eg.db

Mapping table for Mus musculus Gene ID to MeSH

MeSH.Mtr.eg.db

Mapping table for Medicago truncatula Gene ID to MeSH

MeSH.Nle.eg.db

Mapping table for Normascus leucogenys Gene ID to MeSH

MeSH.Oan.eg.db

Mapping table for Ornithorhynchus anatinus Gene ID to MeSH

MeSH.Ocu.eg.db

Mapping table for Oryctolagus cuniculus Gene ID to MeSH

MeSH.Oni.eg.db

Mapping table for Oreochromis niloticus Gene ID to MeSH

MeSH.Osa.eg.db

Mapping table for Oryza sativa Japonica Gene ID to MeSH

MeSH.Pab.eg.db

Mapping table for Pongo abelii Gene ID to MeSH

MeSH.Pae.PAO1.eg.db

Mapping table for Pseudomonas aeruginosa PAO1 Gene ID to MeSH

MeSH.PCR.db

A set of annotation maps describing the entire MeSH

MeSH.Pfa.3D7.eg.db

Mapping table for Plasmodium falciparum 3D7 Gene ID to MeSH

MeSH.Pto.eg.db

Mapping table for Pan troglodytes Gene ID to MeSH

MeSH.Ptr.eg.db

Mapping table for Populus trichocarpa Gene ID to MeSH

MeSH.Rno.eg.db

Mapping table for Rattus norvegicus Gene ID to MeSH

MeSH.Sau.USA300TCH1516.eg.db

Mapping table for Staphylococcus aureus subsp. aureus USA300_TCH1516 Gene ID to MeSH

MeSH.Sce.S288c.eg.db

Mapping table for Saccharomyces cerevisiae S288c Gene ID to MeSH

MeSH.Sco.A32.eg.db

Mapping table for Streptomyces coelicolor A3(2) Gene ID to MeSH

MeSH.Sil.eg.db

Mapping table for Bombyx mori Gene ID to MeSH

MeSH.Spo.972h.eg.db

Mapping table for Schizosaccharomyces pombe 972h- Gene ID to MeSH

MeSH.Spu.eg.db

Mapping table for Strongylocentrotus purpuratus Gene ID to MeSH

MeSH.Ssc.eg.db

Mapping table for Sus scrofa Gene ID to MeSH

MeSH.Syn.eg.db

Mapping table for Cyanobacteria Gene ID to MeSH

MeSH.Tbr.9274.eg.db

Mapping table for Trypanosoma brucei brucei strain 927_4 GUTat10.1 Gene ID to MeSH

MeSH.Tgo.ME49.eg.db

Mapping table for Toxoplasma gondii ME49 Gene ID to MeSH

MeSH.Tgu.eg.db

Mapping table for Taeniopygia guttata Gene ID to MeSH

MeSH.Vvi.eg.db

Mapping table for Vitis vinifera Gene ID to MeSH

MeSH.Xla.eg.db

Mapping table for Xenopus laevis Gene ID to MeSH

MeSH.Xtr.eg.db

Mapping table for Xenopus tropicalis Gene ID to MeSH

MeSH.Zma.eg.db

Mapping table for Zea mays Gene ID to MeSH

MeSHDbi

DBI to construct MeSH-related package from sqlite file

meshes

MeSH Enrichment and Semantic analyses

meshr

Tools for conducting enrichment analysis of MeSH

MeSHSim

MeSH(Medical Subject Headings) Semantic Similarity Measures

meshsimp

Simplification of Surface Triangular Meshes with Associated Distributed Data

MESS

Miscellaneous Esoteric Statistical Scripts

messaging

Conveniently Issue Messages, Warnings, and Errors

messina

Single-gene classifiers and outlier-resistant detection of differential expression for two-group and survival problems.

meta4diag

Meta-Analysis for Diagnostic Test Studies

MetaAnalyser

An Interactive Visualisation of Meta-Analysis as a Physical Weighing Machine

metaArray

Integration of Microarray Data for Meta-analysis

Metab

Metab: An R Package for a High-Throughput Analysis of Metabolomics Data Generated by GC-MS.

MetABEL

Meta-analysis of genome-wide SNP association results

metaBLUE

BLUE for Combining Location and Scale Information in a Meta-Analysis

metaBMA

Bayesian Model Averaging for Random and Fixed Effects Meta-Analysis

metaboGSE

Gene Set Enrichment Analysis via Integration of Metabolic Networks and RNA-Seq Data

MetabolAnalyze

Probabilistic latent variable models for metabolomic data.

MetabolicSurv

A Biomarker Validation Approach for Classification and Predicting Survival Using Metabolomics Signature

MetaboList

Annotation of Metabolites from Liquid Chromatography-Mass Spectrometry Data

metabolomics

Analysis of Metabolomics Data

MetabolomicsBasics

Basic Functions to Investigate Metabolomics Data Matrices

MetaboLouise

METABOlomics LOngitudinal SimUlation Engine

metabomxtr

A package to run mixture models for truncated metabolomics data with normal or lognormal distributions

MetaboQC

Normalize Metabolomic Data using QC Signal

MetaboSignal

MetaboSignal: a network-based approach to overlay and explore metabolic and signaling KEGG pathways

metacart

Meta-CART: A Flexible Approach to Identify Moderators in Meta-Analysis

metaCCA

Summary Statistics-Based Multivariate Meta-Analysis of Genome-Wide Association Studies Using Canonical Correlation Analysis

metacoder

Tools for Parsing, Manipulating, and Graphing Taxonomic Abundance Data

metacom

Analysis of the 'Elements of Metacommunity Structure'

MetaComp

EDGE Taxonomy Assignments Visualization

metacor

Meta-analysis of correlation coefficients

MetaCycle

Evaluate Periodicity in Large Scale Data

MetaCyto

MetaCyto: A package for meta-analysis of cytometry data

Metadata

Collates Metadata for Climate Surface Stations

MetaDE

MetaDE: Microarray meta-analysis for differentially expressed gene detection

metaDigitise

Extract and Summarise Data from Published Figures

metadynminer

Tools to Read, Analyze and Visualize Metadynamics HILLS Files from 'Plumed'

metafolio

Metapopulation simulations for conserving salmon through portfolio optimization

metafor

Meta-Analysis Package for R

metaforest

Exploring Heterogeneity in Meta-Analysis using Random Forests

metafuse

Fused Lasso Approach in Regression Coefficient Clustering

metagear

Comprehensive Research Synthesis Tools for Systematic Reviews and Meta-Analysis

metagen

Inference in Meta Analysis and Meta Regression

metagene

A package to produce metagene plots

metagenomeFeatures

Exploration of marker-gene sequence taxonomic annotations

metagenomeSeq

Statistical analysis for sparse high-throughput sequencing

MetaGxBreast

Transcriptomic Breast Cancer Datasets

MetaGxOvarian

Transcriptomic Ovarian Cancer Datasets

MetaGxPancreas

Transcriptomic Pancreatic Cancer Datasets

metahdep

Hierarchical Dependence in Meta-Analysis

metaheur

Metaheuristic Optimization Framework for Preprocessing Combinations

MetaheuristicFPA

An Implementation of Flower Pollination Algorithm in R

metaheuristicOpt

Metaheuristic for Optimization

MetaIntegrator

Meta-Analysis of Gene Expression Data

MetaLandSim

Landscape and Range Expansion Simulation

metaLik

Likelihood Inference in Meta-Analysis and Meta-Regression Models

MetaLonDA

Metagenomics Longitudinal Differential Abundance Method

metaMA

Meta-analysis for MicroArrays

MetamapsDB

Network Analysis of Metabolic Pathways and Gene Based Assemblies in Metagenomics

metamedian

Meta-Analysis of Medians

metamer

Creates Data with Identical Statistics

metamisc

Diagnostic and Prognostic Meta-Analysis

metaMix

Bayesian Mixture Analysis for Metagenomic Community Profiling

metaMS

MS-based metabolomics annotation pipeline

metaMSdata

Example CDF data for the metaMS package

MetaNeighbor

Single cell replicability analysis

metansue

Meta-Analysis of Studies with Non-Statistically Significant Unreported Effects

metap

Meta-Analysis of Significance Values

MetaPath

Perform the Meta-Analysis for Pathway Enrichment Analysis (MAPE)

MetaPCA

MetaPCA: Meta-analysis in the Dimension Reduction of Genomic data

metaplot

Data-Driven Plot Design

metaplotr

Creates CrossHairs Plots for Meta-Analyses

metaplus

Robust Meta-Analysis and Meta-Regression

metapost

Interface to 'MetaPost'

metapro

Robust P-Value Combination Methods

MetaQC

MetaQC: Objective Quality Control and Inclusion/Exclusion Criteria for Genomic Meta-Analysis

metaRMST

Meta-Analysis of RMSTD

metaRNASeq

Meta-analysis of RNA-seq data

metaSEM

Meta-Analysis using Structural Equation Modeling

metasens

Advanced Statistical Methods to Model and Adjust for Bias in Meta-Analysis

metaSeq

Meta-analysis of RNA-Seq count data in multiple studies

metaseqR

An R package for the analysis and result reporting of RNA-Seq data by combining multiple statistical algorithms.

MetaSKAT

Meta Analysis for SNP-Set (Sequence) Kernel Association Test

MetaStan

Bayesian Meta-Analysis via 'Stan'

MetaSubtract

Subtracting Summary Statistics of One or more Cohorts from Meta-GWAS Results

metatest

Fit and Test Metaregression Models

Metatron

Meta-analysis for Classification Data and Correction to Imperfect Reference

MetaUtility

Utility Functions for Conducting and Reporting Meta-Analysis

metavcov

Variance-Covariance Matrix for Multivariate Meta-Analysis

metaviz

Forest Plots, Funnel Plots, and Visual Funnel Plot Inference for Meta-Analysis

metavizr

R Interface to the metaviz web app for interactive metagenomics data analysis and visualization

metawho

Meta-Analytical Implementation to Identify Who Benefits Most from Treatments

metaX

An R package for metabolomic data analysis

MetCirc

Navigating mass spectral similarity in high-resolution MS/MS metabolomics data

meteo

Spatio-Temporal Analysis and Mapping of Meteorological Observations

meteoForecast

Numerical Weather Predictions

meteogRam

Tools for plotting meteograms

meteoland

Landscape Meteorology Tools

meteR

Fitting and Plotting Tools for the Maximum Entropy Theory of Ecology (METE)

MEtest

A Homogeneity Test under the Presence of Measurement Errors

MetFns

Analysis of Visual Meteor Data

Meth27QC

Meth27QC: sample quality analysis, and sample control analysis

MethComp

Functions for Analysis of Agreement in Method Comparison Studies

methimpute

Imputation-guided re-construction of complete methylomes from WGBS data

methInheritSim

Simulating Whole-Genome Inherited Bisulphite Sequencing Data

MethodCompare

Bias and Precision Plots to Compare Two Measurements with Possibly Heteroscedastic Measurement Errors

MethPed

A DNA methylation classifier tool for the identification of pediatric brain tumor subtypes

Methplot

Visualize the methylation patterns

MethTargetedNGS

Perform Methylation Analysis on Next Generation Sequencing Data

methVisual

Methods for visualization and statistics on DNA methylation data

methyAnalysis

DNA methylation data analysis and visualization

MethyBayes

Full Bayesian Partition Model for Identifying Differentially Methylated Loci

MethylAid

Visual and interactive quality control of large Illumina DNA Methylation array data sets

MethylAidData

MethylAid-summarized data for 2800 Illumina 450k array samples and 2620 EPIC array samples

MethylCapSig

Detection of Differentially Methylated Regions using MethylCap-Seq Data

methylInheritance

Permutation-Based Analysis associating Conserved Differentially Methylated Elements from One Generation to the Next to a Treatment Effect

methylKit

DNA methylation analysis from high-throughput bisulfite sequencing results

MethylMix

MethylMix: Identifying methylation driven cancer genes

methylMnM

detect different methylation level (DMR)

methylPipe

Base resolution DNA methylation data analysis

MethylSeekR

Segmentation of Bis-seq data

methylumi

Handle Illumina methylation data

methyvim

Targeted Variable Importance for Differential Methylation Analysis

methyvimData

Example experimental data for use with the methyvim package

MeTo

Meteorological Tools

MetProc

Separate Metabolites into Likely Measurement Artifacts and True Metabolites

metR

Tools for Easier Analysis of Meteorological Fields

Metrics

Evaluation Metrics for Machine Learning

metricsgraphics

Create Interactive Charts with the JavaScript 'MetricsGraphics' Library

metricTester

Test Metric and Null Model Statistical Performance

metRology

Support for Metrological Applications

metrumrg

Pharmacometric tools for data preparation, modeling, simulation, and reporting

mets

Analysis of Multivariate Event Times

metScanR

Find, Map, and Gather Environmental Data and Metadata

MetSizeR

GUI Tool for Estimating Sample Sizes for Metabolomic Experiments

MetStaT

Statistical metabolomics tools

metsyn

Interface with the Meteo France Synop Data API

mev

Multivariate Extreme Value Distributions

mewAvg

A Fixed Memeory Moving Expanding Window Average

MEWMA

Multivariate Exponentially Weighted Moving Average (MEWMA) Control Chart

mexhaz

Mixed Effect Excess Hazard Models

mExplorer

Identifying Master Gene Regulators from Gene Expression and DNA-Binding Data

MExPosition

Multi-table ExPosition

MF

Mitigated Fraction

mfa

Bayesian hierarchical mixture of factor analyzers for modelling genomic bifurcations

MFAg

Multiple Factor Analysis (MFA)

mfblock

Fitting and Simulation of a block multifactor model

mfbvar

Mixed-Frequency Bayesian VAR Models

MFDA

Model Based Functional Data Analysis

MFDF

Modeling Functional Data in Finance

MFDFA

MultiFractal Detrended Fluctuation Analysis

mfe

Meta-Feature Extractor

mfGARCH

Mixed-Frequency GARCH Models

MFHD

Multivariate Functional Halfspace Depth

mFilter

Miscellaneous Time Series Filters

MFKnockoffs

Model-Free Knockoff Filter for Controlled Variable Selection

mfp

Multivariable Fractional Polynomials

MFPCA

Multivariate Functional Principal Component Analysis for Data Observed on Different Dimensional Domains

mfr

Minimal Free Resolutions of Graph Edge Ideals

MFSAS

Creation and Evaluation of Multilevel Fixed and Sequential Sampling Plans

MFT

The Multiple Filter Test for Change Point Detection

MfUSampler

Multivariate-from-Univariate (MfU) MCMC Sampler

Mfuzz

Soft clustering of time series gene expression data

mfx

Marginal Effects, Odds Ratios and Incidence Rate Ratios for GLMs

mgarchBEKK

Simulating, Estimating and Diagnosing MGARCH (BEKK and mGJR) Processes

mgc

Multiscale Graph Correlation

mgcv

Mixed GAM Computation Vehicle with Automatic Smoothness Estimation

mgcViz

Visualisations for Generalized Additive Models

MGFM

Marker Gene Finder in Microarray gene expression data

MGFR

Marker Gene Finder in RNA-seq data

MGGM

Structural Pursuit Over Multiple Undirected Graphs

MGL

Module Graphical Lasso

MGLM

Multivariate Response Generalized Linear Models

mglR

Master Gene List

mgm

Estimating Time-Varying k-Order Mixed Graphical Models

mgpd

mgpd: Functions for multivariate generalized Pareto distribution (MGPD of Type II)

mgraph

Graphing map attributes and non-map variables in R

MGRASTer

API Client for the MG-RAST Server of the US DOE KBase

mgsa

Model-based gene set analysis

MGSDA

Multi-Group Sparse Discriminant Analysis

mgsub

Safe, Multiple, Simultaneous String Substitution

mGSZ

Gene set analysis based on GSZ-scoring function and asymptotic p-value

mgu74a.db

Affymetrix Murine Genome U74v2 annotation data (chip mgu74a)

mgu74acdf

mgu74aprobe

Probe sequence data for microarrays of type mgu74a

mgu74av2.db

Affymetrix Murine Genome U74v2 annotation data (chip mgu74av2)

mgu74av2cdf

mgu74av2probe

Probe sequence data for microarrays of type mgu74av2

mgu74b.db

Affymetrix Murine Genome U74v2 annotation data (chip mgu74b)

mgu74bcdf

mgu74bprobe

Probe sequence data for microarrays of type mgu74b

mgu74bv2.db

Affymetrix Murine Genome U74v2 annotation data (chip mgu74bv2)

mgu74bv2cdf

mgu74bv2probe

Probe sequence data for microarrays of type mgu74bv2

mgu74c.db

Affymetrix Murine Genome U74v2 annotation data (chip mgu74c)

mgu74ccdf

mgu74cprobe

Probe sequence data for microarrays of type mgu74c

mgu74cv2.db

Affymetrix Murine Genome U74v2 annotation data (chip mgu74cv2)

mgu74cv2cdf

mgu74cv2probe

Probe sequence data for microarrays of type mgu74cv2

mguatlas5k.db

Clontech BD Atlas Long Oligos Mouse 5K annotation data (chip mguatlas5k)

mgug4104a.db

Agilent annotation data (chip mgug4104a)

mgug4120a.db

Agilent annotation data (chip mgug4120a)

mgug4121a.db

Agilent Mouse annotation data (chip mgug4121a)

mgug4122a.db

Agilent "Mouse Genome, Whole" annotation data (chip mgug4122a)

mgwrsar

GWR and MGWR with Spatial Autocorrelation

MHadaptive

General Markov Chain Monte Carlo for Bayesian Inference using adaptive Metropolis-Hastings sampling

MHCtools

Analysis of MHC Data in Non-Model Species

mhde

Minimum Hellinger Distance Test for Normality

mHG

Minimum-Hypergeometric Test

mhsmm

Inference for Hidden Markov and Semi-Markov Models

mht

Multiple Hypotheses Testing For Variable Selection

mhtboot

Multiple Hypothesis Test Based on Distribution of p Values

MHTcop

Tests Controlling the FDR / FWER under Certain Copula Models

MHTdiscrete

Multiple Hypotheses Testing for Discrete Data

MHTmult

Multiple Hypotheses Testing for Multiple Families/Groups Structure

MHTrajectoryR

Bayesian Model Selection in Logistic Regression for the Detection of Adverse Drug Reactions

mhurdle

Multiple Hurdle Tobit Models

mi

Missing Data Imputation and Model Checking

mi16cod.db

Codelink Mouse Inflammation 16 Bioarray annotation data (chip mi16cod)

MIAmaxent

A Modular, Integrated Approach to Maximum Entropy Distribution Modeling

micar

'Mica' Data Web Portal Client

mice

Multivariate Imputation by Chained Equations

miceadds

Some Additional Multiple Imputation Functions, Especially for 'mice'

micEcon

Microeconomic Analysis and Modelling

micEconAids

Demand Analysis with the Almost Ideal Demand System (AIDS)

micEconCES

Analysis with the Constant Elasticity of Substitution (CES) function

micEconIndex

Price and Quantity Indices

micEconSNQP

Symmetric Normalized Quadratic Profit Function

miceExt

Extension Package to 'mice'

miceFast

Fast Imputations Using 'Rcpp' and 'Armadillo'

micemd

Multiple Imputation by Chained Equations with Multilevel Data

miceMNAR

Missing not at Random Imputation Models for Multiple Imputation by Chained Equation

michelRodange

The Works (in Luxembourguish) of Michel Rodange

MiChip

MiChip Parsing and Summarizing Functions

MiClip

A Model-based Approach to Identify Binding Sites in CLIP-Seq Data

micompr

Multivariate Independent Comparison of Observations

miCoPTCM

Promotion Time Cure Model with Mis-Measured Covariates

microbats

An Implementation of Bat Algorithm in R

microbenchmark

Accurate Timing Functions

microbiome

Microbiome Analytics

microclass

Methods for Taxonomic Classification of Prokaryotes

microcontax

The ConTax Data Package

MicroDatosEs

Utilities for Official Spanish Microdata

microdemic

'Microsoft Academic' API Client

MicroMacroMultilevel

Micro-Macro Multilevel Modeling

micromap

Linked Micromap Plots

micromapST

Linked Micromap Plots for General U. S. and Other Geographic Areas

micropan

Microbial Pan-Genome Analysis

microplot

Microplots (Sparklines) in 'LaTeX', 'Word', 'HTML', 'Excel'

microPop

Modelling Microbial Populations

microRNA

Data and functions for dealing with microRNAs

microRNAome

SummarizedExperiment for the microRNAome project

microsamplingDesign

Finding Optimal Microsampling Designs for Non-Compartmental Pharmacokinetic Analysis

microseq

Basic Biological Sequence Handling

MicroStrategyR

MicroStrategyR Package

microsynth

Synthetic Control Methods with Micro- And Meso-Level Data

MicSim

Performing Continuous-Time Microsimulation

MiDA

Microarray Data Analysis

midas

Turn HTML 'Shiny'

midasr

Mixed Data Sampling Regression

midastouch

Multiple Imputation by Distance Aided Donor Selection

MIDN

Nearly Exact Sample Size Calculation for Exact Powerful Nonrandomized Tests for Differences Between Binomial Proportions

midrangeMCP

Multiple Comparisons Procedures Based on Studentized Midrange and Range Distributions

MIfuns

Pharmacometric tools for data preparation, modeling, simulation, and reporting

MigClim

Implementing dispersal into species distribution models

migest

Methods for the Indirect Estimation of Bilateral Migration

migration.indices

Migration indices

MIGSA

Massive and Integrative Gene Set Analysis

MIGSAdata

MIGSA vignette data

migui

Graphical User Interface to the 'mi' Package

miic

Learning Causal or Non-Causal Graphical Models Using Information Theory

MIICD

Multiple Imputation for Interval Censored Data

MIIVsem

Model Implied Instrumental Variable (MIIV) Estimation of Structural Equation Models

MILC

MIcrosimulation Lung Cancer (MILC) model

miLineage

Association Tests for Microbial Lineages on a Taxonomic Tree

milonga

Multiple Imputation for Multivariate Binary Outcome

milr

Multiple-Instance Logistic Regression with LASSO Penalty

mimager

mimager: The Microarray Imager

mime

Map Filenames to MIME Types

mimi

Main Effects and Interactions in Mixed and Incomplete Data

MImix

Mixture summary method for multiple imputation

MIMOSA

Mixture Models for Single-Cell Assays

mimsy

Calculate MIMS Dissolved Gas Concentrations Without Getting a Headache

MindOnStats

Data sets included in Utts and Heckard's Mind on Statistics

mindr

Convert Files Between Markdown or Rmarkdown Files and Mindmaps

mineCitrus

Extract and Analyze Median Molecule Intensity from 'citrus' Output

mined

Minimum Energy Designs

MineICA

Analysis of an ICA decomposition obtained on genomics data

minerva

Maximal Information-Based Nonparametric Exploration for Variable Analysis

minet

Mutual Information NETworks

Miney

Implementation of the Well-Known Game to Clear Bombs from a Given Field (Matrix)

minfi

Analyze Illumina Infinium DNA methylation arrays

minfiData

Example data for the Illumina Methylation 450k array

minfiDataEPIC

Example data for the Illumina Methylation EPIC array

miniCRAN

Create a Mini Version of CRAN Containing Only Selected Packages

miniGUI

Tcl/Tk Quick and Simple Function GUI

minimalRSD

Minimally Changed CCD and BBD

minimap

Create Tile Grid Maps

minimax

Minimax distribution family

minimaxdesign

Minimax and Minimax Projection Designs

MinimumDistance

A Package for De Novo CNV Detection in Case-Parent Trios

minionSummaryData

Summarised MinION sequencing data published by Ashton et al. 2015

Minirand

Minimization Randomization

miniUI

Shiny UI Widgets for Small Screens

minpack.lm

R Interface to the Levenberg-Marquardt Nonlinear Least-Squares Algorithm Found in MINPACK, Plus Support for Bounds

minPtest

Gene region-level testing procedure for SNP data, using the min P test resampling approach

minqa

Derivative-free optimization algorithms by quadratic approximation

minque

An R Package for Linear Mixed Model Analyses

minval

MINimal VALidation for Stoichiometric Reactions

minxent

Entropy Optimization Distributions

miP

Multiple Imputation Plots

mipfp

Multidimensional Iterative Proportional Fitting and Alternative Models

MIPHENO

Mutant Identification through Probabilistic High throughput Enabled NOrmalization

MiPP

Misclassification Penalized Posterior Classification

MIRA

Methylation-Based Inference of Regulatory Activity

miRada

MicroRNA Microarray Data Analysis

MiRaGE

MiRNA Ranking by Gene Expression

MiRAnorm

Adaptive Normalization for miRNA Data

mirbase.db

miRBase: the microRNA database

miRBaseConverter

A comprehensive and high-efficiency tool for converting and retrieving the information of miRNAs in different miRBase versions

miRBaseVersions.db

Collection of mature miRNA names of 22 different miRBase release versions

miRcomp

Tools to assess and compare miRNA expression estimatation methods

miRcompData

Data used in the miRcomp package

mirIntegrator

Integrating microRNA expression into signaling pathways for pathway analysis

MiRKAT

Microbiome Regression-Based Kernel Association Test

MIRL

Multiple Imputation Random Lasso for Variable Selection with Missing Entries

miRLAB

Dry lab for exploring miRNA-mRNA relationships

miRmine

Data package with miRNA-seq datasets from miRmine database as RangedSummarizedExperiment

mirna102xgaincdf

mirna10cdf

mirna10probe

Probe sequence data for microarrays of type mirna10

mirna20cdf

miRNAmeConverter

Convert miRNA Names to Different miRBase Versions

miRNApath

miRNApath: Pathway Enrichment for miRNA Expression Data

miRNAss

Genome-Wide Discovery of Pre-miRNAs with few Labeled Examples

miRNAtap

miRNAtap: microRNA Targets - Aggregated Predictions

miRNAtap.db

Data for miRNAtap

miRNATarget

gene target tabale of miRNA for human/mouse used for MiRaGE package

MiRSEA

'MicroRNA' Set Enrichment Analysis

miRsponge

Identification and analysis of miRNA sponge interaction networks and modules

Mirsynergy

mirt

Multidimensional Item Response Theory

mirtCAT

Computerized Adaptive Testing with Multidimensional Item Response Theory

miRtest

combined miRNA- and mRNA-testing

mirtjml

Joint Maximum Likelihood Estimation for High-Dimensional Item Factor Analysis

misaem

Logistic Regression with Missing Covariates

misc3d

Miscellaneous 3D Plots

miscF

Miscellaneous Functions

miscFuncs

Miscellaneous Useful Functions Including LaTeX Tables, Kalman Filtering and Development Tools

misclassGLM

Computation of Generalized Linear Models with Misclassified Covariates Using Side Information

miscor

Miscellaneous Functions for the Correlation Coefficient

MiscPsycho

Miscellaneous Psychometric Analyses

miscset

Miscellaneous Tools Set

miscTools

Miscellaneous Tools and Utilities

mise

Clears the Workspace (Mise en Place)

Miso

Multi-Isotope Labeling for Metabolomics Analysis

mispr

Multiple Imputation with Sequential Penalized Regression

MiSPU

Microbiome Based Sum of Powered Score (MiSPU) Tests

misreport

Statistical Analysis of Misreporting on Sensitive Survey Questions

missCompare

Intuitive Missing Data Imputation Framework

missDeaths

Simulating and Analyzing Time to Event Data in the Presence of Population Mortality

missForest

Nonparametric Missing Value Imputation using Random Forest

MissingDataGUI

A GUI for Missing Data Exploration

missingHE

Missing Outcome Data in Health Economic Evaluation

missMDA

Handling Missing Values with Multivariate Data Analysis

MissMech

Testing Homoscedasticity, Multivariate Normality, and Missing Completely at Random

missMethyl

Analysing Illumina HumanMethylation BeadChip Data

missRanger

Fast Imputation of Missing Values

missRows

Handling Missing Individuals in Multi-Omics Data Integration

missSBM

Handling Missing Data in Stochastic Block Models

MiST

Mixed effects Score Test for continuous outcomes

mistat

Data Sets, Functions and Examples from the Book: "Modern Industrial Statistics" by Kenett, Zacks and Amberti

mistr

Mixture and Composite Distributions

mistral

Methods in Structural Reliability Analysis

MitISEM

Mixture of Student t Distributions using Importance Sampling and Expectation Maximization

mitml

Tools for Multiple Imputation in Multilevel Modeling

mitoODE

Implementation of the differential equation model described in "Dynamical modelling of phenotypes in a genome-wide RNAi live-cell imaging assay"

mitoODEdata

Experimental data associated to the paper "Dynamical modelling of phenotypes in a genome-wide RNAi live-cell imaging assay" (submitted).

mitools

Tools for Multiple Imputation of Missing Data

MittagLeffleR

Mittag-Leffler Family of Distributions

miWQS

Multiple Imputation using Weighted Quantile Sum Analysis

mix

Estimation/Multiple Imputation for Mixed Categorical and Continuous Data

mixAK

Multivariate Normal Mixture Models and Mixtures of Generalized Linear Mixed Models Including Model Based Clustering

MixAll

Clustering and Classification using Model-Based Mixture Models

mixcat

Mixed effects cumulative link and logistic regression models

mixchar

Mixture Model for the Deconvolution of Thermal Decay Curves

mixdir

Cluster High Dimensional Categorical Datasets

mixdist

Finite Mixture Distribution Models

MixedDataImpute

Missing Data Imputation for Continuous and Categorical Data using Nonparametric Bayesian Joint Models

mixedMem

Tools for Discrete Multivariate Mixed Membership Models

MixedPoisson

Mixed Poisson Models

MixedPsy

Statistical Tools for the Analysis of Psychophysical Data

mixedQF

Estimator with Qudratics Forms in Mixeds Models

mixedsde

Estimation Methods for Stochastic Differential Mixed Effects Models

MixedTS

Mixed Tempered Stable Distribution

mixEMM

A Mixed-Effects Model for Analyzing Cluster-Level Non-Ignorable Missing Data

mixer

Random Graph Clustering

mixexp

Design and Analysis of Mixture Experiments

mixfdr

Computes false discovery rates and effect sizes using normal mixtures

MIXFIM

Evaluation of the FIM in NLMEMs using MCMC

MixfMRI

Mixture fMRI Clustering Analysis

mixggm

Mixtures of Gaussian Graphical Models

MixGHD

Model Based Clustering, Classification and Discriminant Analysis Using the Mixture of Generalized Hyperbolic Distributions

mixKernel

Omics Data Integration Using Kernel Methods

mixlink

Mixture Link Regression

mixlm

Mixed Model ANOVA and Statistics for Education

mixlow

mixlow method for assessing drug synergism

MixMAP

Implements the MixMAP Algorithm

mixOmics

Omics Data Integration Project

mixor

Mixed-Effects Ordinal Regression Analysis

mixpack

Tools to Work with Mixture Components

mixPHM

Mixtures of Proportional Hazard Models

mixR

Finite Mixture Modeling for Raw and Binned Data

mixRasch

Mixture Rasch Models with JMLE

mixRaschTools

Plotting and Average Theta Functions for Multiple Class Mixed Rasch Models

mixreg

Functions to Fit Mixtures of Regressions

MixRF

A Random-Forest-Based Approach for Imputing Clustered Incomplete Data

MixSAL

Mixtures of Multivariate Shifted Asymmetric Laplace (SAL) Distributions

mixsep

Forensic Genetics DNA Mixture Separation

MixSIAR

Bayesian Mixing Models in R

MixSim

Simulating Data to Study Performance of Clustering Algorithms

mixsmsn

Fitting Finite Mixture of Scale Mixture of Skew-Normal Distributions

mixSPE

Mixtures of Power Exponential and Skew Power Exponential Distributions for Use in Model-Based Clustering and Classification

mixsqp

Sequential Quadratic Programming for Fast Maximum-Likelihood Estimation of Mixture Proportions

mixstock

functions for mixed stock analysis

mixtNB

DE Analysis of RNA-Seq Data by Mixtures of NB

mixtools

Tools for Analyzing Finite Mixture Models

mixtox

Curve Fitting and Mixture Toxicity Assessment

mixture

Finite Gaussian Mixture Models for Clustering and Classification

MixtureInf

Inference for Finite Mixture Models

MixtureRegLTIC

Mixture Regression Models for Left-Truncated and Interval-Censored Data

mize

Unconstrained Numerical Optimization Algorithms

mizer

Multi-Species sIZE Spectrum Modelling in R

mkde

2D and 3D movement-based kernel density estimates (MKDEs).

mkin

Kinetic Evaluation of Chemical Degradation Data

MKLE

Maximum kernel likelihood estimation.

MKmisc

Miscellaneous Functions from M. Kohl

mknapsack

Multiple Knapsack Problem Solver

mkssd

Efficient multi-level k-circulant supersaturated designs

ML.MSBD

Maximum Likelihood Inference on Multi-State Trees

mlapi

Abstract Classes for Building 'scikit-learn' Like API

MlBayesOpt

Hyper Parameter Tuning for Machine Learning, Using Bayesian Optimization

mlbench

Machine Learning Benchmark Problems

mlbgameday

Tools to Gather Data from Major League Baseball Advanced Media

mlbstats

Major League Baseball Player Statistics Calculator

MLCIRTwithin

Latent Class Item Response Theory (LC-IRT) Models under Within-Item Multidimensionality

MLCM

Maximum Likelihood Conjoint Measurement

MLDA

Methylation Linear Discriminant Analysis (MLDA)

MLDAShiny

Interactive Document for Working with Discriminant Analysis

mlDNA

Machine Learning-based Differential Network Analysis of Transcriptome Data

mldr

Exploratory Data Analysis and Manipulation of Multi-Label Data Sets

mldr.datasets

R Ultimate Multilabel Dataset Repository

MLDS

Maximum Likelihood Difference Scaling

mle.tools

Expected/Observed Fisher Information and Bias-Corrected Maximum Likelihood Estimate(s)

mleap

Interface to 'MLeap'

mlearning

Machine learning algorithms with unified interface and confusion matrices

MLEcens

Computation of the MLE for bivariate (interval) censored data

mlegp

Maximum Likelihood Estimates of Gaussian Processes

MLEP

Maximum likelihood estimate of penetrance parameters

mlergm

Multilevel Exponential-Family Random Graph Models

mleur

Maximum likelihood unit root test

mlf

Machine Learning Foundations

mlflow

Interface to 'MLflow'

MLGL

Multi-Layer Group-Lasso

mlgt

Multi-Locus Geno-Typing

mlica2

Independent Component Analysis using Maximum Likelihood

MLID

Multilevel Index of Dissimilarity

MLInterfaces

Uniform interfaces to R machine learning procedures for data in Bioconductor containers

mljar

R API for MLJAR

mlma

Multilevel Mediation Analysis

mlmc

Multi-Level Monte Carlo

MLmetrics

Machine Learning Evaluation Metrics

MLML2R

Maximum Likelihood Estimation of DNA Methylation and Hydroxymethylation Proportions

mlmm

Multilevel Model for Multivariate Responses with Missing Values

mlmm.gwas

Pipeline for GWAS Using MLMM

mlmmm

ML estimation under multivariate linear mixed models with missing values

mlmRev

Examples from Multilevel Modelling Software Review

mlogit

Multinomial Logit Models

mlogitBMA

Bayesian Model Averaging for Multinomial Logit Models

MLP

MLPAstats

MLPA analysis to detect gains and loses in genes

mlPhaser

Multi-Locus Haplotype Phasing

MLPUGS

Multi-Label Prediction Using Gibbs Sampling (and Classifier Chains)

mlr

Machine Learning in R

mlrCPO

Composable Preprocessing Operators and Pipelines for Machine Learning

mlrMBO

Bayesian Optimization and Model-Based Optimization of Expensive Black-Box Functions

MLRMPA

A package for Multilinear Regression Model Population Analysis

MLRShiny

Interactive Application for Working with Multiple Linear Regression

MLSeq

Machine Learning Interface for RNA-Seq Data

mlsjunkgen

Use the MLS Junk Generator Algorithm to Generate a Stream of Pseudo-Random Numbers

mlt

Most Likely Transformations

mlt.docreg

Most Likely Transformations: Documentation and Regression Tests

mltest

Classification Evaluation Metrics

mltools

Machine Learning Tools

mlVAR

Multi-Level Vector Autoregression

mlvocab

Vocabulary and Corpus Preprocessing for Natural Language Pipelines

mlxR

Simulation of Longitudinal Data

MLZ

Mean Length-Based Estimators of Mortality using TMB

MM

The Multiplicative Multinomial Distribution

mm24kresogen.db

RNG_MRC Mouse Pangenomic 24k Set annotation data (chip mm24kresogen)

MM2S

Single-Sample Classifier of Medulloblastoma Subtypes for Medulloblastoma Patient Samples, Mouse Models, and Cell Lines

MM2Sdata

Gene Expression Datasets for the 'MM2S' Package

MM4LMM

Inference of Linear Mixed Models Through MM Algorithm

mma

Multiple Mediation Analysis

mmabig

Multiple Mediation Analysis for Big Data Sets

MMAC

Data for Mathematical Modeling and Applied Calculus

MmAgilentDesign026655.db

Agilent Chips that use Agilent design number 026655 annotation data (chip MmAgilentDesign026655)

mmand

Mathematical Morphology in Any Number of Dimensions

mmap

Map Pages of Memory

mmapcharr

Memory-Map Character Files

mmc

Multivariate Measurement Error Correction

mmcm

Modified Maximum Contrast Method

MMDai

Multivariate Multinomial Distribution Approximation and Imputation for Incomplete Data

MMDiff

Statistical Testing for ChIP-Seq data sets

MMDiff2

Statistical Testing for ChIP-Seq data sets

MMDiffBamSubset

Example ChIP-Seq data for the MMDiff package

mmds

Mixture Model Distance Sampling (mmds)

MMDvariance

Detecting Differentially Variable Genes Using the Mixture of Marginal Distributions

mme

Multinomial Mixed Effects Models

mmeln

Estimation of Multinormal Mixture Distribution

MMeM

Multivariate Mixed Effects Model

mmeta

Multivariate Meta-Analysis

mmetrics

Easy Computation of Marketing Metrics with Different Analysis Axis

MmgraphR

Graphing for Markov, Hidden Markov, and Mixture Transition Distribution Models

MMIX

Model selection uncertainty and model mixing

MMLR

Fitting Markov-Modulated Linear Regression Models

mmm

an R package for analyzing multivariate longitudinal data with multivariate marginal models

mmm2

Multivariate marginal models with shared regression parameters

mmmgee

Simultaneous Inference for Multiple Linear Contrasts in GEE Models

MMMS

Multi-Marker Molecular Signature for Treatment-specific Subgroup Identification

mmnet

A metagenomic pipeline for systems biology

mmod

Modern Measures of Population Differentiation

mMPA

Implementation of Marker-Assisted Mini-Pooling with Algorithm

MmPalateMiRNA

Murine Palate miRNA Expression Analysis

mmpf

Monte-Carlo Methods for Prediction Functions

mmpp

Various Similarity and Distance Metrics for Marked Point Processes

mmppr

Markov Modulated Poisson Process for Unsupervised Event Detection in Time Series of Counts

MMPPsampler

Efficient Gibbs-Sampler for Markov-Modulated-Poisson-Processes

MMS

Fixed Effects Selection in Linear Mixed Models

mmsample

Multivariate Matched Sampling

MMST

DATASETS FROM MMST

mmtfa

Model-Based Clustering and Classification with Mixtures of Modified t Factor Analyzers

mmtsne

Multiple Maps t-SNE

MMWRweek

Convert Dates to MMWR Day, Week, and Year

mnis

Easy Downloading Capabilities for the Members' Name Information Service

mnlfa

Moderated Nonlinear Factor Analysis

mnlogit

Multinomial Logit Model

MNLR

Interactive Shiny Presentation for Working with Multinomial Logistic Regression

MNM

Multivariate Nonparametric Methods. An Approach Based on Spatial Signs and Ranks

mnormpow

Multivariate Normal Distributions with Power Integrand

mnormt

The Multivariate Normal and t Distributions

MNP

R Package for Fitting the Multinomial Probit Model

mnreadR

MNREAD Parameters Estimation and Curve Plotting

MNS

Mixed Neighbourhood Selection

mnspc

Multivariate Nonparametric Statistical Process Control

mobForest

Model Based Random Forest Analysis

MobileTrigger

Run Reports, Models, and Scripts from a Mobile Device

Mobilize

Mobilize plots and functions

mobsim

Spatial Simulation and Scale-Dependent Analysis of Biodiversity Changes

moc

General Nonlinear Multivariate Finite Mixtures

moc.gapbk

Multi-Objective Clustering Algorithm Guided by a-Priori Biological Knowledge

MOCCA

Multi-Objective Optimization for Collecting Cluster Alternatives

mockery

Mocking Library for R

mockr

Mocking in R

mod09nrt

Extraction of Bands from MODIS Surface Reflectance Product MOD09 NRT

MODA

MODA: MOdule Differential Analysis for weighted gene co-expression network

Modalclust

Hierarchical Modal Clustering

modcmfitr

Fit a Modified Connor-Mosimann Distribution to Elicited Quantiles in Multinomial Problems

modeest

Mode Estimation

modehunt

Multiscale Analysis for Density Functions

model4you

Stratified and Personalised Models Based on Model-Based Trees and Forests

modelcf

Modeling physical computer codes with functional outputs using clustering and dimensionality reduction

Modelcharts

Classification Model Charts

modeldb

Fits Models Inside the Database

modelDown

Make Static HTML Website for Predictive Models

Modeler

Classes and Methods for Training and Using Binary Prediction Models

modelfree

Model-free estimation of a psychometric function

ModelGood

Validation of risk prediction models

modelgrid

A Framework for Creating, Managing and Training Multiple Caret Models

modellingTools

A Collection of Useful Custom Tools for D&A and Modelling

ModelMap

Modeling and Map Production using Random Forest and Stochastic Gradient Boosting

ModelMetrics

Rapid Calculation of Model Metrics

modelObj

A Model Object Framework for Regression Analysis

modelplotr

Plots to Evaluate the Business Performance of Predictive Models

modelr

Modelling Functions that Work with the Pipe

modeltools

Tools and Classes for Statistical Models

modelwordcloud

Model Word Clouds

moderndive

Tidyverse-Friendly Introductory Linear Regression

modes

Find the Modes and Assess the Modality of Complex and Mixture Distributions, Especially with Big Datasets

modest

Model-Based Dose-Escalation Trials

modesto

Modeling and Analysis of Stochastic Systems

modeval

Evaluation of Classification Model Options

modi

Multivariate Outlier Detection and Imputation for Incomplete Survey Data

modifiedmk

Modified Versions of Mann Kendall and Spearman's Rho Trend Tests

MODIS

Acquisition and Processing of MODIS Products

modiscloud

R tools for processing Level 2 Cloud Mask products from MODIS

MODISSnow

Provides a Function to Download MODIS Snow Cover

MODISTools

Interface to the 'MODIS Land Products Subsets' Web Services

MODIStsp

A Tool for Automating Download and Preprocessing of MODIS Land Products Data

modmarg

Calculating Marginal Effects and Levels with Errors

modMax

Community Structure Detection via Modularity Maximization

modopt.matlab

'MatLab'-Style Modeling of Optimization Problems

modQR

Multiple-Output Directional Quantile Regression

modTempEff

Modelling temperature effects using time series data

modTurPoint

Estimate ED50 Based on Modified Turning Point Method

moduleColor

Basic Module Functions

modules

Self Contained Units of Source Code

modygliani

MOlecular DYnamics GLobal ANalysis

moe430a.db

Affymetrix Mouse Expression Set 430 annotation data (chip moe430a)

moe430acdf

moe430aprobe

Probe sequence data for microarrays of type moe430a

moe430b.db

Affymetrix Mouse Expression Set 430 annotation data (chip moe430b)

moe430bcdf

moe430bprobe

Probe sequence data for microarrays of type moe430b

MOEADr

Component-Wise MOEA/D Implementation

MoEClust

Gaussian Parsimonious Clustering Models with Covariates and a Noise Component

moex10stprobeset.db

Affymetrix moex10 annotation data (chip moex10stprobeset)

moex10sttranscriptcluster.db

Affymetrix moex10 annotation data (chip moex10sttranscriptcluster)

MoExExonProbesetLocation

Probe sequence data for microarrays of type MoEx

moezipfR

Marshall-Olkin Extended Zipf

mogavs

Multiobjective Genetic Algorithm for Variable Selection in Regression

mogene.1.0.st.v1frmavecs

Vectors used by frma for microarrays of type mogene.1.0.st.v1frmavecs

mogene10stprobeset.db

Affymetrix mogene10 annotation data (chip mogene10stprobeset)

mogene10sttranscriptcluster.db

Affymetrix mogene10 annotation data (chip mogene10sttranscriptcluster)

mogene10stv1cdf

mogene10stv1probe

Probe sequence data for microarrays of type mogene10stv1

mogene11stprobeset.db

Affymetrix mogene11 annotation data (chip mogene11stprobeset)

mogene11sttranscriptcluster.db

Affymetrix mogene11 annotation data (chip mogene11sttranscriptcluster)

mogene20stprobeset.db

Affymetrix mogene20 annotation data (chip mogene20stprobeset)

mogene20sttranscriptcluster.db

Affymetrix mogene20 annotation data (chip mogene20sttranscriptcluster)

mogene21stprobeset.db

Affymetrix mogene21 annotation data (chip mogene21stprobeset)

mogene21sttranscriptcluster.db

Affymetrix mogene21 annotation data (chip mogene21sttranscriptcluster)

mogsa

Multiple omics data integrative clustering and gene set analysis

MOJOV

Mojo Variants: Rare Variants analysis

mokken

Conducts Mokken Scale Analysis

moko

Multi-Objective Kriging Optimization

molaR

Dental Surface Complexity Measurement Tools

MoLE

Modeling Language Evolution

MOLHD

Multiple Objective Latin Hypercube Design

mombf

Bayesian Model Selection and Averaging for Non-Local and Local Priors

momentchi2

Moment-Matching Methods for Weighted Sums of Chi-Squared Random Variables

moments

Moments, cumulants, skewness, kurtosis and related tests

momentuHMM

Maximum Likelihood Analysis of Animal Movement Behavior Using Multivariate Hidden Markov Models

Momocs

Morphometrics using R

momr

Mining Metaomics Data (MetaOMineR)

MomTrunc

Moments of Folded and Doubly Truncated Multivariate Distributions

mondate

Keep track of dates in terms of months

Mondrian

A Simple Graphical Representation of the Relative Occurrence and Co-Occurrence of Events

MonetDB.R

Connect MonetDB to R

MonetDBLite

In-Process Version of 'MonetDB'

mongolite

Fast and Simple 'MongoDB' Client for R

monitoR

Acoustic Template Detection in R

monkeylearn

Accesses the Monkeylearn API for Text Classifiers and Extractors

monmlp

Multi-Layer Perceptron Neural Network with Optional Monotonicity Constraints

monocle

Clustering, differential expression, and trajectory analysis for single- cell RNA-Seq

monogeneaGM

Geometric Morphometric Analysis of Monogenean Anchors

monographaR

Taxonomic Monographs Tools

MonoInc

Monotonic Increasing

monomvn

Estimation for Multivariate Normal and Student-t Data with Monotone Missingness

MonoPhy

Allows to Explore Monophyly (or Lack of it) of Taxonomic Groups in a Phylogeny

MonoPoly

Functions to Fit Monotone Polynomials

monoreg

Bayesian Monotonic Regression Using a Marked Point Process Construction

monotonicity

Test for Monotonicity in Expected Asset Returns, Sorted by Portfolios

monreg

Nonparametric Monotone Regression

Monte.Carlo.se

Monte Carlo Standard Errors

MonteCarlo

Automatic Parallelized Monte Carlo Simulations

moonBook

Functions and Datasets for the Book by Keon-Woong Moon

MoonFinder

Identify Moonlighting ncRNAs

MoonlightR

Identify oncogenes and tumor suppressor genes from omics data

moonsun

Basic astronomical calculations with R

mopa

Species Distribution MOdeling with Pseudo-Absences

MoPS

MoPS - Model-based Periodicity Screening

mopsocd

MOPSOCD: Multi-objective Particle Swarm Optimization with Crowding Distance

MOQA

Basic Quality Data Assurance for Epidemiological Research

morgenstemning

Color schemes compatible with red-green color perception difficulties

morpheus

Estimate Parameters of Mixtures of Logistic Regressions

Morpho

Calculations and Visualisations Related to Geometric Morphometrics

morse

Modelling Tools for Reproduction and Survival Data in Ecotoxicology

MorseGen

Simple raw data generator based on user-specified summary statistics.

mortAAR

Analysis of Archaeological Mortality Data

MortalityGaps

The Double-Gap Life Expectancy Forecasting Model

MortalityLaws

Parametric Mortality Models, Life Tables and HMD

MortalitySmooth

Smoothing and Forecasting Poisson Counts with P-Splines

MortalityTables

A Framework for Various Types of Mortality / Life Tables

MortCast

Estimation and Projection of Age-Specific Mortality Rates

MortHump

Measure the Young Adult Mortality Hump

mosaic

Project MOSAIC Statistics and Mathematics Teaching Utilities

mosaicCalc

Function-Based Numerical and Symbolic Differentiation and Antidifferentiation

mosaicCore

Common Utilities for Other MOSAIC-Family Packages

mosaicData

Project MOSAIC Data Sets

mosaicModel

An Interface to Statistical Modeling Independent of Model Architecture

mosaicQA

MOSAIC - Basic Quality Data Assurance for Epidemiologic Research

mosaics

MOSAiCS (MOdel-based one and two Sample Analysis and Inference for ChIP-Seq)

mosaicsExample

Example data for the mosaics package, which implements MOSAiCS and MOSAiCS-HMM, a statistical framework to analyze one-sample or two-sample ChIP-seq data for transcription factor binding and histone modification

MOST

Multiphase Optimization Strategy

mosum

Moving Sum Based Procedures for Changes in the Mean

MoTBFs

Learning Hybrid Bayesian Networks using Mixtures of Truncated Basis Functions

MOTE

Effect Size and Confidence Interval Calculator

motifbreakR

A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites

motifcounter

R package for analysing TFBSs in DNA sequences

MotifDb

An Annotated Collection of Protein-DNA Binding Sequence Motifs

motifmatchr

Fast Motif Matching in R

motifRG

A package for discriminative motif discovery, designed for high throughput sequencing dataset

motifStack

Plot stacked logos for single or multiple DNA, RNA and amino acid sequence

MotilityLab

Quantitative Analysis of Motion

MotIV

Motif Identification and Validation

motmot

Models of Trait Macroevolution on Trees

motmot.2.0

Models of Trait Macroevolution on Trees

motoRneuron

Analyzing Paired Neuron Discharge Times for Time-Domain Synchronization

moult

Models for Analysing Moult in Birds

mountainplot

Mountain Plots, Folded Empirical Cumulative Distribution Plots

mouse.db0

Base Level Annotation databases for mouse

mouse4302.db

Affymetrix Mouse Genome 430 2.0 Array annotation data (chip mouse4302)

mouse4302barcodevecs

mouse4302 data for barcode

mouse4302cdf

mouse4302frmavecs

Vectors used by frma for microarrays of type mouse4302

mouse4302probe

Probe sequence data for microarrays of type mouse4302

mouse430a2.db

Affymetrix Mouse Genome 430A 2.0 Array annotation data (chip mouse430a2)

mouse430a2cdf

mouse430a2frmavecs

Vectors used by frma for microarrays of type mouse430a2

mouse430a2probe

Probe sequence data for microarrays of type mouse430a2

mouseCHRLOC

A data package containing annotation data for mouseCHRLOC

mousetrap

Process and Analyze Mouse-Tracking Data

move

Visualizing and Analyzing Animal Track Data

movecost

Calculation of Accumulated Cost Surface and Least-Cost Paths Related to Human Movement Across the Landscape

moveHMM

Animal Movement Modelling using Hidden Markov Models

moveVis

Movement Data Visualization

moveWindSpeed

Estimate Wind Speeds from Bird Trajectories

MovieSpider

Using Web Crawler to Obtain Real-Time Movie Data for Further Analysis

movMF

Mixtures of von Mises-Fisher Distributions

mozzie

Weekly Notified Dengue Cases in Sri Lanka

mp

Multidimensional Projection Techniques

mpa

CoWords Method

MPAgenomics

Multi-Patient Analysis of Genomic Markers

mpath

Regularized Linear Models

mpbart

Multinomial Probit Bayesian Additive Regression Trees

mpc

MPC - Multiple Precision Complex Library

MPCI

Multivariate Process Capability Indices (MPCI)

mpcmp

Mean-Parametrized Conway-Maxwell Poisson (COM-Poisson) Regression

mpcv

Multivariate Process Capability Vector

MPDiR

Data sets and scripts for Modeling Psychophysical Data in R.

mpe

Multiple Primary Endpoints

mpedbarray.db

FHCRC Nelson Lab mpedbarray Annotation Data (mpedbarray)

MPFE

Estimation of the amplicon methylation pattern distribution from bisulphite sequencing data

mph

Multiscale persistent homology

MPINet

The package can implement the network-based metabolite pathway identification of pathways.

MPkn

Calculations of One Discrete Model in Several Time Steps

MPLikelihoodWB

Modified Profile Likelihood Estimation for Weibull Shape and Regression Parameters

mplot

Graphical Model Stability and Variable Selection Procedures

MplusAutomation

An R Package for Facilitating Large-Scale Latent Variable Analyses in Mplus

mpm

Multivariate Projection Methods

mpMap

Multi-parent RIL genetic analysis

mpmcorrelogram

Multivariate Partial Mantel Correlogram

mpmi

Mixed-Pair Mutual Information Estimators

MPN

Most Probable Number and Other Microbial Enumeration Techniques

mpoly

Symbolic Computation and More with Multivariate Polynomials

Mposterior

Mposterior: R package for Robust and Scalable Bayes via a Median of Subset Posterior Measures

mppa

Statistics for analysing multiple simultaneous point processes on the real line

mppR

Multi-Parent Population QTL Analysis

mpr

Multi-Parameter Regression (MPR)

MPR.genotyping

Maximum Parsimony of Recombination to Infer Parental Genotypes

mpra

Analyze massively parallel reporter assays

mprobit

Multivariate probit model for binary/ordinal response

MPS

Estimating Through the Maximum Product Spacing Approach

MPSEM

Modeling Phylogenetic Signals using Eigenvector Maps

MPsychoR

Modern Psychometrics with R

mpt

Multinomial Processing Tree Models

MPTinR

Analyze Multinomial Processing Tree Models

MPTmultiverse

Multiverse Analysis of Multinomial Processing Tree Models

mptools

RAMAS Metapop Tools

MPV

Data Sets from Montgomery, Peck and Vining

Mqrcm

M-Quantile Regression Coefficients Modeling

mQTL

Metabolomic Quantitative Trait Locus Mapping

mQTL.NMR

Metabolomic Quantitative Trait Locus Mapping for 1H NMR data

mr.raps

Two Sample Mendelian Randomization using Robust Adjusted Profile Score

mra

Mark-Recapture Analysis

mratios

Ratios of Coefficients in the General Linear Model

mrbsizeR

Scale Space Multiresolution Analysis of Random Signals

MRCE

Multivariate Regression with Covariance Estimation

mRchmadness

Numerical Tools for Filling Out an NCAA Basketball Tournament Bracket

MRCV

Methods for Analyzing Multiple Response Categorical Variables (MRCVs)

mrdrc

Model-robust concentration-response analysis

mrds

Mark-Recapture Distance Sampling

mreg

Fits regression models when the outcome is partially missing.

mregions

Marine Regions Data from 'Marineregions.org'

MRFA

Fitting and Predicting Large-Scale Nonlinear Regression Problems using Multi-Resolution Functional ANOVA (MRFA) Approach

MRFcov

Markov Random Fields with Additional Covariates

mrfDepth

Depth Measures in Multivariate, Regression and Functional Settings

mrgsolve

Simulate from ODE-Based Models

MRH

Multi-Resolution Estimation of the Hazard Rate

MRHawkes

Multivariate Renewal Hawkes Process

mri

Modified Rand and Wallace Indices

MRIaggr

Management, Display, and Processing of Medical Imaging Data

mritc

MRI Tissue Classification

mRm

An R Package for Conditional Maximum Likelihood Estimation in Mixed Rasch Models

mrMLM

Multi-Locus Random-SNP-Effect Mixed Linear Model Tools for Genome-Wide Association Study

mrMLM.GUI

Multi-Locus Random-SNP-Effect Mixed Linear Model Tools for Genome-Wide Association Study

MRMR

Multivariate Regression Models for Reserving

mRMRe

"Parallelized Minimum Redundancy, Maximum Relevance (mRMR) Ensemble Feature Selection"

mro

Multiple Correlation

MRPC

PC Algorithm with the Principle of Mendelian Randomization

MRQoL

Minimal Clinically Important Difference and Response Shift Effect for Health-Related Quality of Life

MRS

Multi-Resolution Scanning for Cross-Sample Differences

MRsurv

A multiplicative-regression model for relative survival.

MRTSampleSize

A Sample Size Calculator for Micro-Randomized Trials

MRwarping

Multiresolution time warping for functional data.

ms.sev

Package for Calculation of ARMSS, Local MSSS and Global MSSS

msa

Multiple Sequence Alignment

msaenet

Multi-Step Adaptive Estimation Methods for Sparse Regressions

msaFACE

Moving Subset Analysis FACE

msap

Statistical analysis for Methylation-sensitive Amplification Polymorphism data

msaR

Multiple Sequence Alignment for R Shiny

msarc

Draw Diagrams (mis)Representing the Results of Mass Spec Experiments

MsatAllele

Visualizes the scoring and binning of microsatellite fragment sizes

MSBdata

Data sets for the book 'Modern Statistics for Biology'

MSbox

Mass Spectrometry Tools

msBP

Multiscale Bernstein Polynomials for Densities

MSBVAR

Markov-Switching, Bayesian, Vector Autoregression Models

mschart

Chart Generation for 'Microsoft Word' and 'Microsoft PowerPoint' Documents

MSCMT

Multivariate Synthetic Control Method Using Time Series

MScombine

Combine Data from Positive and Negative Ionization Mode Finding Common Entities

mscstexta4r

R Client for the Microsoft Cognitive Services Text Analytics REST API

mscstts

R Client for the Microsoft Cognitive Services 'Text-to-Speech' REST API

mscsweblm4r

R Client for the Microsoft Cognitive Services Web Language Model REST API

msd16s

Healthy and moderate to severe diarrhea 16S expression data

msda

Multi-Class Sparse Discriminant Analysis

msdata

Various Mass Spectrometry raw data example files

msde

Bayesian Inference for Multivariate Stochastic Differential Equations

MsdeParEst

Parametric Estimation in Mixed-Effects Stochastic Differential Equations

mseapca

Metabolite set enrichment analysis for factor loading in principal component analysis

MSeasy

Preprocessing of Gas Chromatography-Mass Spectrometry (GC-MS) data

MSeasyTkGUI

MSeasy Tcl/Tk Graphical User Interface

mseq

Modeling non-uniformity in short-read rates in RNA-Seq data

MSEtool

Management Strategy Evaluation Toolkit

MSG

Data and Functions for the Book Modern Statistical Graphics

MSGARCH

Markov-Switching GARCH Models

msgbsR

msgbsR: methylation sensitive genotyping by sequencing (MS-GBS) R functions

MSGFgui

A shiny GUI for MSGFplus

MSGFplus

An interface between R and MS-GF+

msgl

Multinomial Sparse Group Lasso

MSGLasso

Multivariate Sparse Group Lasso for the Multivariate Multiple Linear Regression with an Arbitrary Group Structure

msgpack

A Compact, High Speed Data Format

msgpackR

A library to serialize or unserialize data in MessagePack format

msgps

Degrees of Freedom of Elastic Net, Adaptive Lasso and Generalized Elastic Net

msgtools

Tools for Developing Diagnostic Messages

msigdbr

MSigDB Gene Sets for Multiple Organisms in a Tidy Data Format

mSimCC

Micro Simulation Model for Cervical Cancer Prevention

msir

Model-Based Sliced Inverse Regression

MSIseq

Assess Tumor Microsatellite Instability with a Decision Tree Classifier from Exome Somatic Mutations

msltrend

Improved Techniques to Estimate Trend, Velocity and Acceleration from Sea Level Records

msm

Multi-State Markov and Hidden Markov Models in Continuous Time

msma

Multiblock Sparse Multivariable Analysis

msme

Functions and Datasets for "Methods of Statistical Model Estimation"

msmsEDA

Exploratory Data Analysis of LC-MS/MS data by spectral counts

msmsTests

LC-MS/MS Differential Expression Tests

msmtools

Building Augmented Data to Run Multi-State Models with 'msm' Package

MSMwRA

Multivariate Statistical Methods with R Applications

MSnbase

Base Functions and Classes for Mass Spectrometry and Proteomics

MSnID

Utilities for Exploration and Assessment of Confidence of LC-MSn Proteomics Identifications

msos

Data Sets and Functions Used in Multivariate Statistics: Old School by John Marden

MSPRT

Modified Sequential Probability Ratio Test (MSPRT)

msPurity

Automated Evaluation of Precursor Ion Purity for Mass Spectrometry Based Fragmentation in Metabolomics

msPurityData

Fragmentation spectral libraries and data to test the msPurity package

MSQC

Multivariate Statistical Quality Control

msqc1

Sigma mix MSQC1 data

msr

Morse-Smale Approximation, Regression and Visualization

mssm

Multivariate State Space Models

mssqlR

MSSQL Querying using R

MSstats

Protein Significance Analysis in DDA, SRM and DIA for Label-free or Label-based Proteomics Experiments

MSstatsBioData

Datasets of published biological studies with DDA or SRM experiments

MSstatsQC

Longitudinal system suitability monitoring and quality control for proteomic experiments

MSstatsQCgui

A graphical user interface for MSstatsQC package

msSurv

Nonparametric Estimation for Multistate Models

MST

Multivariate Survival Trees

mstate

Data Preparation, Estimation and Prediction in Multi-State Models

mstherm

Analyze MS/MS Protein Melting Data

mstknnclust

MST-kNN Clustering Algorithm

MSToolkit

The MSToolkit library for clinical trial design

mstR

Procedures to Generate Patterns under Multistage Testing

mstrio

Interface for 'MicroStrategy' REST APIs

msu

Multivariate Symmetric Uncertainty and Other Measurements

MSwM

Fitting Markov Switching Models

MTA

Multiscalar Territorial Analysis

mta10probeset.db

Affymetrix mta10 annotation data (chip mta10probeset)

mta10stprobeset.db

Affymetrix mta10 annotation data (chip mta10stprobeset)

mta10sttranscriptcluster.db

Affymetrix mta10 annotation data (chip mta10sttranscriptcluster)

mta10transcriptcluster.db

Affymetrix mta10 annotation data (chip mta10transcriptcluster)

mtbls2

MetaboLights MTBLS2: Comparative LC/MS-based profiling of silver nitrate-treated Arabidopsis thaliana leaves of wild-type and cyp79B2 cyp79B3 double knockout plants. Böttcher et al. (2004)

mtconnectR

Read Data from Delimited 'MTConnect' Data Files and Perform some Analysis

mtcreator

Creating MAGE-TAB files using mtcreator

MTDrh

Mass Transportation Distance Rank Histogram

MTE

Maximum Tangent Likelihood and Other Robust Estimation for High-Dimensional Regression

mthapower

Sample Size and Power for Association Studies Involving Mitochondrial DNA Haplogroups

mtk

Mexico ToolKit library (MTK)

MTLR

Survival Prediction with Multi-Task Logistic Regression

MtreeRing

A Shiny Application for Automatic Measurements of Tree-Ring Widths on Digital Images

MTS

All-Purpose Toolkit for Analyzing Multivariate Time Series (MTS) and Estimating Multivariate Volatility Models

mtsdi

Multivariate Time Series Data Imputation

MTSKNN

Multivariate two-sample tests based on K-nearest-neighbors

MTSYS

Methods in Mahalanobis-Taguchi (MT) System

MTurkR

R Client for the MTurk Requester API

MTurkRGUI

A Graphical User Interface for MTurkR

mu11ksuba.db

Affymetrix Murine 11K Set annotation data (chip mu11ksuba)

mu11ksubacdf

mu11ksubaprobe

Probe sequence data for microarrays of type mu11ksuba

mu11ksubb.db

Affymetrix Murine 11K Set annotation data (chip mu11ksubb)

mu11ksubbcdf

mu11ksubbprobe

Probe sequence data for microarrays of type mu11ksubb

Mu15v1.db

FHCRC Genomics Shared Resource Mu15v1 Annotation Data (Mu15v1)

mu19ksuba.db

Affymetrix Murine Genome 19k Set annotation data (chip mu19ksuba)

mu19ksubacdf

mu19ksubb.db

Affymetrix Murine Genome 19k Set annotation data (chip mu19ksubb)

mu19ksubbcdf

mu19ksubc.db

Affymetrix Murine Genome 19k Set annotation data (chip mu19ksubc)

mu19ksubccdf

Mu22v3.db

FHCRC Genomics Shared Resource Mu22v3 Annotation Data (Mu22v3)

mu6500subacdf

mu6500subbcdf

mu6500subccdf

mu6500subdcdf

MUCflights

Munich Franz-Josef-Strauss Airport Pattern Analysis

MuChPoint

Multiple Change Point

muckrock

Data on Freedom of Information Act Requests

mudata

Interchange Tools for Multi-Parameter Spatiotemporal Data

mudata2

Interchange Tools for Multi-Parameter Spatiotemporal Data

mudens

Density Estimate

mudfold

Multiple UniDimensional unFOLDing

mueRelativeRisk

Relative Risk Based on the Ratio of Median Unbiased Estimates

MuFiCokriging

Multi-Fidelity Cokriging models

MUGAExampleData

Example {M}ouse {U}niversal {G}enotyping {A}rray data for genome reconstruction and quantitative trait locus mapping.

mugnet

Mixture of Gaussian Bayesian Network Model

muhaz

Hazard Function Estimation in Survival Analysis

muHVT

Constructing Hierarchical Voronoi Tessellations and Overlay Heatmap for Data Analysis

muir

Exploring Data with Tree Data Structures

Mulcom

Calculates Mulcom test

Mulder2012

Predicting functional networks and modules of chromatin factors controlling adult stem cell fate from RNA interference screens

MullerPlot

Generates Muller Plot from Population/Abundance/Frequency Dynamics Data

mulset

Multiset Intersection Generator

MultAlloc

Optimal Allocation in Stratified Sampling

multcomp

Simultaneous Inference in General Parametric Models

multcompView

Visualizations of Paired Comparisons

multDM

Multivariate Version of the Diebold-Mariano Test

multdyn

Multiregression Dynamic Models

MultEq

Multiple Equivalence Tests and Simultaneous Confidence Intervals

multfisher

Optimal Exact Tests for Multiple Binary Endpoints

multgee

GEE Solver for Correlated Nominal or Ordinal Multinomial Responses

MultiABEL

Multi-Trait Genome-Wide Association Analysis

multiApply

Apply Functions to Multiple Multidimensional Arrays or Vectors

MultiAssayExperiment

Software for the integration of multi-omics experiments in Bioconductor

MultiBD

Multivariate Birth-Death Processes

multibiplotGUI

Multibiplot Analysis in R

multic

Quantitative Linkage Analysis Tools using the Variance Components Approach

multiCA

Multinomial Cochran-Armitage Trend Test

multicastR

A Companion to the Multi-CAST Collection

MultiChIPmixHMM

MultiChIPmixHMM, an R package for ChIP-chip data analysis modeling spatial dependencies and multiple replicates.

multichull

A Generic Convex-Hull-Based Model Selection Method

Multiclasstesting

Performance of N-ary classification testing

multiClust

multiClust: An R-package for Identifying Biologically Relevant Clusters in Cancer Transcriptome Profiles

multicmp

Flexible Modeling of Multivariate Count Data via the Multivariate Conway-Maxwell-Poisson Distribution

MultiCNVDetect

Multiple Copy Number Variation Detection

multicolor

Add Multiple Colors to your Console & RMarkdown Output

multicon

Multivariate Constructs

multicool

Permutations of Multisets in Cool-Lex Order

multicore

A stub package to ease transition to 'parallel'.

multicross

A Graph-Based Test for Comparing Multivariate Distributions in the Multi Sample Framework

MultiDataSet

Implementation of MultiDataSet and ResultSet

multiDimBio

Multivariate Analysis and Visualization for Biological Data

MultiFit

Multivariate Multiscale Framework for Independence Tests

multifluo

Dealing with Several Images of a Same Object Constituted of Different Zones

multifwf

Read Fixed Width Format Files Containing Lines of Different Type

MultiGHQuad

Multidimensional Gauss-Hermite Quadrature

multigraph

Plot and Manipulate Multigraphs

multigroup

Multigroup Data Analysis

MultiJoin

Enables Efficient Joining of Data File on Common Fields using the Unix Utility Join

multilaterals

Transitive Index Numbers for Cross-Sections and Panel Data

MultiLCIRT

Multidimensional Latent Class Item Response Theory Models

multilevel

Multilevel Functions

multilevelMatching

Propensity Score Matching and Subclassification in Observational Studies with Multi-Level Treatments

multilevelPSA

Multilevel Propensity Score Analysis

multimark

Capture-Mark-Recapture Analysis using Multiple Non-Invasive Marks

MultiMed

Testing multiple biological mediators simultaneously

multiMiR

Integration of multiple microRNA-target databases with their disease and drug associations

multimode

Mode Testing and Exploring

multinbmod

Regression analysis of overdispersed correlated count data

multinet

Analysis and Mining of Multilayer Social Networks

multinets

Multilevel Networks Analysis

MultinomialCI

Simultaneous confidence intervals for multinomial proportions according to the method by Sison and Glaz

multinomineq

Bayesian Inference for Multinomial Models with Inequality Constraints

multinomRob

Robust Estimation of Overdispersed Multinomial Regression Models

multiOmicsViz

Plot the effect of one omics data on other omics data along the chromosome

MultiOrd

Generation of Multivariate Ordinal Variates

multipanelfigure

Infrastructure to Assemble Multi-Panel Figures (from Grobs)

MultiPhen

A Package to Test for Pleiotropic Effects

multiPIM

Variable Importance Analysis with Population Intervention Models

MultipleBubbles

Test and Detection of Explosive Behaviors for Time Series

multipleNCC

Weighted Cox-Regression for Nested Case-Control Data

multiplex

Algebraic Tools for the Analysis of Multiple Social Networks

MultiplierDEA

Multiplier Data Envelopment Analysis and Cross Efficiency

multiplyr

Data Manipulation with Parallelism and Shared Memory Matrices

multipol

Multivariate Polynomials

multiRDPG

Multiple Random Dot Product Graphs

multirich

Calculate Multivariate Richness via UTC and sUTC

MultiRNG

Multivariate Pseudo-Random Number Generation

MultiRobust

Multiply Robust Methods for Missing Data Problems

multiROC

Calculating and Visualizing ROC and PR Curves Across Multi-Class Classifications

MultiRR

Bias, Precision, and Power for Multi-Level Random Regressions

multiscan

R package for combining multiple scans

multiselect

Selecting Combinations of Predictors by Leveraging Multiple AUCs for an Ordered Multilevel Outcome

multisensi

Multivariate Sensitivity Analysis

MultisiteMediation

Causal Mediation Analysis in Multisite Trials

MultiSkew

Measures, Tests and Removes Multivariate Skewness

multisom

Clustering a Data Set using Multi-SOM Algorithm

multispatialCCM

Multispatial Convergent Cross Mapping

multistate

Fitting Multistate Models

multistateutils

Utility Functions for Parametric Multi-State Models

MultiSV

MultiSV: an R package for identification of structural variations in multiple populations based on whole genome resequencing

multitable

Simultaneous manipulation of multiple arrays of data, with data.list objects

multitaper

Spectral Analysis Tools using the Multitaper Method

multivariance

Measuring Multivariate Dependence Using Distance Multivariance

MultivariateRandomForest

Models Multivariate Cases Using Random Forests

MultiVarMI

Multiple Imputation for Multivariate Data

MultiVarSel

Variable Selection in a Multivariate Linear Model

multivator

A Multivariate Emulator

multiviewtest

Hypothesis Test for Dependent Clusterings of Two Data Views

multiwave

Estimation of Multivariate Long-Memory Models Parameters

multiway

Component Models for Multi-Way Data

MultiwayRegression

Perform Tensor-on-Tensor Regression

multiwayvcov

Multi-Way Standard Error Clustering

multmod

Testing of multiple outcomes

MultNonParam

Multivariate Nonparametric Methods

multtest

Resampling-based multiple hypothesis testing

multxpert

Common Multiple Testing Procedures and Gatekeeping Procedures

muma

Metabolomics Univariate and Multivariate Analysis

MuMIn

Multi-Model Inference

mumm

Multiplicative Mixed Models using the Template Model Builder

munfold

Metric Unfolding

munsell

Utilities for Using Munsell Colours

munsellinterpol

Interpolate Munsell Renotation Data from Hue/Chroma to CIE/RGB

muRL

Mailmerge using R, LaTeX, and the Web

murphydiagram

Murphy Diagrams for Forecast Comparisons

muRty

Murty's Algorithm for k-Best Assignments

MUS

Monetary Unit Sampling and Estimation Methods, Widely Used in Auditing

Mus.musculus

Annotation package for the Mus.musculus object

muscle

Multiple Sequence Alignment with MUSCLE

muscle

Multiple Sequence Alignment

music

Learn and Experiment with Music Theory

musica

Multiscale Climate Model Assessment

musicNMR

Conversion of Nuclear Magnetic Resonance spectrum in audio file

muStat

Prentice Rank Sum Test and McNemar Test

mut

Pairwise Likelihood Ratios

MutationalPatterns

Comprehensive genome-wide analysis of mutational processes

mutatr

Mutable objects for R.

mutoss

Unified Multiple Testing Procedures

mutossGUI

A Graphical User Interface for the MuToss Project

mutSignatures

Decipher Mutational Signatures from Somatic Mutational Catalogs

MuViCP

MultiClass Visualizable Classification using Combination of Projections

MVA

An Introduction to Applied Multivariate Analysis with R

mvabund

Statistical Methods for Analysing Multivariate Abundance Data

MVar

Multivariate Analysis

MVar.pt

Analise multivariada (brazilian portuguese)

MVB

Mutivariate Bernoulli log-linear model

MvBinary

Modelling Multivariate Binary Data with Blocks of Specific One-Factor Distribution

mvbutils

Workspace Organization, Code and Documentation Editing, Package Prep and Editing, Etc

mvc

Multi-View Clustering

MVCClass

Model-View-Controller (MVC) Classes

mvcluster

Multi-View Clustering

mvctm

Multivariate Variance Components Tests for Multilevel Data

mvcwt

Wavelet Analysis of Multiple Time Series

mvdalab

Multivariate Data Analysis Laboratory

mvglmmRank

Multivariate Generalized Linear Mixed Models for Ranking Sports Teams

mvgraphnorm

Multivariate Gaussian Graphical Model Analysis

mvGST

Multivariate and directional gene set testing

mvinfluence

Influence Measures and Diagnostic Plots for Multivariate Linear Models

MVisAGe

Compute and Visualize Bivariate Associations

MVLM

Multivariate Linear Model with Analytic p-Values

mvLSW

Multivariate, Locally Stationary Wavelet Process Estimation

mvmesh

Multivariate Meshes and Histograms in Arbitrary Dimensions

mvmeta

Multivariate and Univariate Meta-Analysis and Meta-Regression

mvMISE

A General Framework of Multivariate Mixed-Effects Selection Models

mvMonitoring

Multi-State Adaptive Dynamic Principal Component Analysis for Multivariate Process Monitoring

mvMORPH

Multivariate Comparative Tools for Fitting Evolutionary Models to Morphometric Data

MVN

Multivariate Normality Tests

mvna

Nelson-Aalen Estimator of the Cumulative Hazard in Multistate Models

MVNBayesian

Bayesian Analysis Framework for MVN (Mixture) Distribution

mvnfast

Fast Multivariate Normal and Student's t Methods

mvngGrAd

Moving Grid Adjustment in Plant Breeding Field Trials

mvnmle

ML Estimation for Multivariate Normal Data with Missing Values

mvnormtest

Normality test for multivariate variables

mvnTest

Goodness of Fit Tests for Multivariate Normality

mvord

Multivariate Ordinal Regression Models

mvoutData

affy and illumina raw data for assessing outlier detector performance

mvoutlier

Multivariate Outlier Detection Based on Robust Methods

mvp

Fast Symbolic Multivariate Polynomials

mvpart

Multivariate partitioning

MVPARTwrap

MVPARTwrap: Additional features for package mvpart.

mvPot

Multivariate Peaks-over-Threshold Modelling for Spatial Extreme Events

MVpower

Give power for a given effect size using multivariate classification methods

mvProbit

Multivariate Probit Models

mvprpb

Orthant Probability of the Multivariate Normal Distribution

mvQuad

Methods for Multivariate Quadrature

MVR

Mean-Variance Regularization

mvrtn

Mean and Variance of Truncated Normal Distribution

mvsf

Shapiro-Francia Multivariate Normality Test

mvShapiroTest

Generalized Shapiro-Wilk test for multivariate normality

mvSLOUCH

Multivariate Stochastic Linear Ornstein-Uhlenbeck Models for Phylogenetic Comparative Hypotheses

mvst

Bayesian Inference for the Multivariate Skew-t Model

MVT

Estimation and Testing for the Multivariate t-Distribution

mvtBinaryEP

Generates Correlated Binary Data

mvtboost

Tree Boosting for Multivariate Outcomes

MVTests

Multivariate Hypothesis Tests

mvtmeta

Multivariate meta-analysis

mvtnorm

Multivariate Normal and t Distributions

mvtsplot

Multivariate Time Series Plot

mwa

Causal Inference in Spatiotemporal Event Data

MWASTools

MWASTools: an integrated pipeline to perform metabolome-wide association studies

mwaved

Multichannel Wavelet Deconvolution with Additive Long Memory Noise

mwgcod.db

Codelink Mouse Whole Genome Bioarray (~36 000 mouse gene targets) annotation data (chip mwgcod)

MWLasso

Penalized Moving-Window Lasso Method for Genome-Wide Association Studies

MWRidge

Two Stage Moving-Window Ridge Method for Prediction and Estimation

mwshiny

'Shiny' for Multiple Windows

mxkssd

Efficient mixed-level k-circulant supersaturated designs

MXM

Feature Selection (Including Multiple Solutions) and Bayesian Networks

My.stepwise

Stepwise Variable Selection Procedures for Regression Analysis

mycobacrvR

Integrative immunoinformatics for Mycobacterial diseases in R platform

mycor

Automatic Correlation and Regression Test in a 'data.frame'

myepisodes

MyEpisodes RSS/API functions

mygene

Access MyGene.Info_ services

Myrrix

Interface to Myrrix. Myrrix is a Complete, Real-Time, Scalable Clustering and Recommender System, Evolved from Apache Mahout

Myrrixjars

R/Myrrix Interface Jars

myTAI

Evolutionary Transcriptomics

myvariant

Accesses MyVariant.info variant query and annotation services

mzID

An mzIdentML parser for R

mzR

parser for netCDF, mzXML, mzData and mzML and mzIdentML files (mass spectrometry data)

Packages

m10kcod.db

m20kcod.db

m2b

m2r

M2SMF

M3

M3C

M3D

M3DExampleData

M3Drop

M4comp

m4fe

maanova

mable

maboost

MAc

macat

macc

machina

MachineLearning

MachineShop

machQA

macleish

MAclinical

maCorrPlot

MACPET

MAd

mada

MADAM

maddison

made4

maditr

madness

MADPop

madr

madrat

mads

MADSEQ

madsim

Maeswrap

MafDb.1Kgenomes.phase1.GRCh38

MafDb.1Kgenomes.phase1.hs37d5

MafDb.1Kgenomes.phase3.GRCh38

MafDb.1Kgenomes.phase3.hs37d5

MafDb.ALL.wgs.phase1.release.v3.20101123

MafDb.ALL.wgs.phase3.release.v5b.20130502

MafDb.ESP6500SI.V2.SSA137.GRCh38

MafDb.ESP6500SI.V2.SSA137.hs37d5

MafDb.ExAC.r0.3.1.snvs.hs37d5

MafDb.ExAC.r1.0.GRCh38

MafDb.ExAC.r1.0.hs37d5

MafDb.ExAC.r1.0.nonTCGA.GRCh38

MafDb.ExAC.r1.0.nonTCGA.hs37d5

MafDb.gnomAD.r2.0.1.GRCh38

MafDb.gnomAD.r2.0.1.hs37d5

MafDb.gnomADex.r2.0.1.GRCh38

MafDb.gnomADex.r2.0.1.hs37d5

MafDb.TOPMed.freeze5.hg19

MafDb.TOPMed.freeze5.hg38

mafs

maftools

magclass

MAGeCKFlute

magic

magicaxis

magicfor

magick

magickGUI

magicLamp

magma

MAGNAMWAR

MagneticMap

magnets

magree

magrittr

maGUI

maigesPack

mail

mailR