OpenAnalytics Colors Package

General Purpose 'Oai-PMH' Services Client

Harvest Metadata Using OAI-PMH Version 2.0

Trees Creation and Manipulation

Orthogonal Array Package

OpenAnalytics Plots Package

Computation of the Orbit-Aware Quad Census

Arrays with Arbitrary Offsets

Multiple Sclerosis Lesion Segmentation using Magnetic Resonance Imaging (MRI)

Outright Tool for the Analysis of Spatial Inequalities and Segregation

Blinder-Oaxaca Decomposition

Limit Order Book Analytics

A factory of self-describing properties.

'RStudio' Addin for Removing Objects from the Global Environment Based on Patterns and Object Type

objectSignals

Cluster-based factor rotation

Oblique Trees for Classification Data

Oblique Random Forests from Recursive Linear Model Splits

Oblique Random Forests for Right-Censored Time-to-Event Data

Estimate the Population Size for the Mb Capture-Recapture Model

Optimal B-Robust Estimator Tools

An R package to assess agreement between observers.

Collect and Process Physical Activity Direct Observation Data

Observe and Check your Data

Objective Bayesian Model Discrimination in Follow-Up Designs

Sensitivity analysis for Observational studies.

Optimal Classification Roll Call Analysis Software

Optimal Capital Allocations

Estimates PET Neuroreceptor Occupancies

Functions for Multinomial Occupancy Distribution

Analysis of Oceanographic Data

Biophysical Oceanography Tools

Cartography for Statistical Analysis

A Plotting Toolbox for 2D Oceanographic Data

Visualisation of Oceanographic Data and Model Output

Oceanographic Data Sets for 'oce' Package

Order Constrained Solutions in k-Means Clustering

Regression for Rank-Indexed Compositional Data

Bayesian Online Changepoint Detection

Operating characteristics plus sample size and local fdr for microarray experiments

R Helper for OData Web Services

Open Document Databases (.odb) management

Connect to ODBC Compatible Databases (using the DBI Interface)

Betting Odds Conversion

Odds Ratios, Contingency Table, and Model Significance from a Generalized Linear Model Object

Odds Ratio Calculation for GAM(M)s & GLM(M)s

C++ ODE Solvers Compiled on-Demand

Network of Differential Equations

Sensitivity Analysis of Ordinary Differential Equations

Solvers for Ordinary Differential Equations

Sweave processing of Open Document Format (ODF) files

Support for odfWeave on the survey package

Convert 'ODK' or 'XLSForm' to 'SPSS' Data Frame

'Open Data Kit' ('ODK') R API

Tools to Convert ODM Files

One-Sided Dynamic Principal Components

Optimal design and performance of random intercept and slope models.

Optimal Design and Statistical Power of Multilevel Randomized Trials

Statistical Methods for Outcome-Dependent Sampling Designs

Outlier detection in multiple sequence alignments

Observatory of Economic Complexity API Wrapper and Utility Program

Search and Extract Data from the OECD

Orthogonalizing EM: Penalized Regression for Big Tall Data

Manipulation of Microsoft Word and PowerPoint Documents

A Meta-Analysis Approach with Filtering for Identifying Gene-Level Gene-Environment Interactions with Genetic Association Data

Objective General Index

Estimation of Ordered Generalized Linear Models

Outlier Gene Set Analysis

OGA+HDIC+Trim and High-Dimensional Linear Regression Models

R Client for Ohmage 2 Server

Ordered Homogeneity Pursuit Lasso for Group Variable Selection

Tomoka Ohta D Statistics

Data sets and supplements (OpenIntro)

Crosstab and Statistical Tests for OII MSc Stats Course

Survival analysis supplement to OpenIntro guide

Multivariate Methods Based on the Oja Median and Related Concepts

Retrieve Oklahoma Mesonet climatological data

Open Location Code Handling in R

Preprocessing tools for oligonucleotide arrays

Classes for high-throughput arrays supported by oligo and crlmm

Dataset samples for the oligo package

Oligo Specificity System

Optimized local intensity-dependent normalisation of two-color microarrays

Graphical user interface for OLIN

OLS growth curve trajectories

Tools for Building OLS Regression Models

R wrapper for the OMA REST API

filter the molecular descriptors for QSAR

Multiple co-inertia analysis of omics datasets

High-quality circular visualization of omics data

Poly-Omic Prediction of Complex TRaits

Visual Exploration of Omic Datasets Using a Shiny App

Exposome and omic data associatin and integration analysis

'--omics' Data Analysis Toolbox

Classification and Feature Selection for 'Omics' Datasets

Perform Two-Way Orthogonal Partial Least Squares

Cross omic genetic fingerprinting

Univariate Bootstrapping and Other Things

A Modified Fisherâ€™s Method to Test Overall Gene-Level Effect

Model and Solve Mixed Integer Linear Programs

A Solver for 'ompr' that Uses the R Optimization Infrastructure ('ROI')

A Metabolomics Analysis Tool for Intuitive Figures and Convenient Metadata Collection

Test of Between-Group Differences in the Onset of Senescence

OnASSIs Ontology Annotation and Semantic SImilarity software

OnassisJavaLibs, java libraries to run conceptmapper and semantic similarity

Identifying Genes Overexpressed in Subsets of Tumors from Tumor-Normal mRNA Expression Data

Maximum likelihood tree models for oncogenesis

A tool to identify potentially oncogenic genes

Forward Genetic Simulation of Cancer Progression with Epistasis

Estimating oncogenetic trees

Machine Learning for S.E.O

Planning, Conducting, and Analysing Single-Arm Phase II Studies

A graphical interface designed to facilitate analysis of microarrays and miRNA/RNA-seq data on laptops

Prediction of condition-specific transcription factor interactions

Fast Onehot Encoding for Data.frames

Construction of Genetic Maps in Experimental Crosses: Full-Sib, RILs, F2 and Backcrosses

One Rule Machine Learning Classification Algorithm with Enhancements

One-Dimensional Soli-Expression by Nonlinear Stochastic Embedding (OneSENSE)

Efficient Authenticated Interaction with the O*NET API

Deal with one and two (normal) samples

One-Way Tests in Independent Groups Designs

Octonions and Quaternions

Detect Changepoints in Multivariate Time Series

Online Principal Component Analysis

Online Fitting of Time-Adaptive Lasso Vector Auto Regression

Orthogonal Nonlinear Least-Squares Regression

R Interface to 'ONNX'

Ontology traversal and search

Functions for Reading Ontologies into R

Functions for Visualising Sets of Ontological Terms

Functions for Calculating Ontological Similarities

processing of ontologies of anatomy, cell lines, and so on

Out of Bag Learning Curve

Ozgur-Ozlem Miscellaneous

Class Unions, Matrix Operations, and Color Schemes for OOMPA

Data to Illustrate OOMPA Algorithms

Optimistic Optimization in R

'Opal' Data Repository Client and 'DataSHIELD' Utils

Opasnet Modelling Environment Utility Functions

Optimal Design of Experiments

Outer-product emulator

Option Pricing and Estimation of Financial Models in R

Client to Access 'Openaddresses' Data

Tools for the Analysis of Air Pollution Data

Interface to the OpenCage API

Interface Allowing R to Use OpenCL

Producing and Reproducing Results

OpenCPU Demo apps.

opencpu object encoder/decoder

Open Population Capture-Recapture

Bindings to 'OpenCV' Computer Vision Library

Hierarchical Gating Pipeline for flow cytometry data

Interface for OpenDota API

EBGM Disproportionality Scores for Adverse Event Data Mining

An Image Processing Toolkit

Data Sets and Supplemental Functions from 'OpenIntro' Textbooks

Open Machine Learning and Open Data Platform

Control Number of OpenMP Threads Dynamically

Extended Structural Equation Modelling

Apache OpenNLP Tools Interface

Apache OpenNLP Jars and Basic English Language Models

openNLP Models for English

openNLP Models for Spanish

Multiplex PCR Primer Design and Analysis

Shiny Application for Multiplex PCR Primer Design and Analysis

Tools to Analyze Repertory Grid Data

Client for the Data API of openSenseMap.org

Toolkit for Encryption, Signatures and Certificates Based on OpenSSL

An Open Source Implementation of the 'ArcGIS' Toolbox 'STARS'

Access to Open Street Map Raster Images

Tools for Creating and Analysing Air Trajectory Data

Automated Method for Verbal Autopsy

API Client for ENGIE's Open Wind Farm

Read, Write and Edit XLSX Files

Online Prediction by Expert Aggregation

An R package of Data Importing, Processing and Analysis for Opera High Content Screening System

Utilities for Working with R's Operators

Additional Binary Operators

FHCRC Nelson Lab OperonHumanV3 Annotation Data (OperonHumanV3)

Open Perimetry Interface

Analysing Phenotype Microarray and Growth Curve Data

Example data for analysing OmniLog(R) Phenotype Microarray data

Comprehensive analysis of transciptome data

Package for analysis and visualization of metagenes

Outlier profile and pathway analysis in R

Routing Distribution, Broadcasts, Transmissions and Receptions in an Opportunistic Network

Optimal Project Prioritization

Optimal Power Space Transformation

Optimal Designs for the 5-Parameter Logistic Model

Optimal Combinations of Diagnostic Tests Based on AUC

'surv' Object Confidence Bands Optimized by Area

Optimal Block Designs for Two-Colour cDNA Microarray Experiments

Estimation of optimal number of biomarkers for two-group microarray based classifications at a given error tolerance level for various classification rules

Determine Optimal Clustering Algorithm and Number of Clusters

Optimal Designs for Estimating the Slope Divided by the Intercept

Tools to Support Optimization Possibly with Bounds and Masks

Near-Optimal and Balanced Group-Sequential Designs for Clinical Trials with Continuous Outcomes

Estimation of value and hedging strategy of call and put options.

Likelihood Based Optimal Partitioning and Indicator Species Analysis

Set Options if Unset

Command-Line Parsing for an R World

Standard Benchmark Optimization Functions

Computing Optimal Cutpoints in Diagnostic Tests

Algorithms for D-, A-, and IV-Optimal Designs

Optimal Timing Identification

Confidence Regions for Optima

R port of the Scilab optimbase module

Create the Best Train for Classification Models

Flexible Optimization of Complex Loss Functions with State and Parameter Space Constraints

Optimos Prime Helps Calculate Autoecological Data for Biological Species

Parallel Version of the L-BFGS-B Optimization Method

A Replacement and Extension of the 'optim' Function

R Port of the 'Scilab' Optimsimplex Module

Choosing the Sample Strategy

Model Based Diagnostics for Multivariate Cluster Analysis

Expanded Replacement and Extension of the 'optim' Function

Optimal Two and Three Stage Designs for Single-Arm and Two-Arm Randomized Controlled Trials with a Long-Term Binary Endpoint

Optional Types and Pattern Matching

Option Pricing with Efficient Simulation Algorithms

Utilizes the Black-Scholes Option Pricing Model to Perform Strategic Option Analysis and Plot Option Strategies

Simplifies and Automates Analyzing and Reporting OptiQuant's log Data

Financial Functions & More

Optimal scaling

Optimum Contribution Selection and Population Genetics

Optimal Mixture Weights in Multiple Importance Sampling

Linear, Quadratic, and Rational Optimization

Estimating the Optimal Number of Migration Edges from 'Treemix'

Functions for Optimal Matching

Command Line Option Parser

Optimal Partitioning of Similarity Relations

Optimization Toolbox for Solving Linear Systems

Optimal Row-Column Designs for Two-Colour cDNA Microarray Experiments

Optimized Regression Discontinuity Designs

Optimal Trees in Weighted Graphs

Optimal Level of Significance for Regression and Other Statistical Tests

Targeted Stable Balancing Weights Using Optimization

OPUS Miner Algorithm for Filtered Top-k Association Discovery

Statistical Methods for Modeling Operational Risk

Optimal p-value weighting with independent information

Convenient Tools for Working with Oracle Databases

Computation of Graphlet Orbit Counts in Sparse Graphs

Several confidence intervals for the odds ratio

Subspace Clustering Based on Arbitrarily Oriented Projected Cluster Generation

Order Restricted Clustering for Microarray Experiments

Omnidirectional R Code Snippets

Estimate Procedure in Case of First Order Autocorrelation

Modelling comparison data with ordinal response

Likelihood-Based Continual Reassessment Method (CRM) Dose Finding Designs

Separating Location and Dispersion in Ordinal Regression Models

Ordinal Dominance Statistics

Estimate parent distributions with data of several order statistics

Orderbook visualization/Charting software

Ordered Lasso and Time-Lag Sparse Regression

Similarities of Ordered Gene Lists

Test, Check, Verify, Investigate the Monotonic Properties of Vectors

Sampling from Order Statistics of New Families of Distributions

Efficiently Generates Random Order Statistic Variables

Least Squares, Logistic, and Cox-Regression with Ordered Predictors

Ordinated Diet Breadth

Regression Models for Ordinal Data

Ordinal Data Clustering, Co-Clustering and Classification

Ordinal Regression Analysis for Continuous Scales

Ordinal Forests: Prediction and Variable Ranking with Ordinal Target Variables

Ordinal Regression for High-Dimensional Data

Co-Clustering of Ordinal Data via Latent Continuous Random Variables

Biplot representations of ordinal variables

Penalized Ordinal Regression

Analysis of Repeatability and Reproducibility Studies with Ordinal Measurements

Ordinal Logic Regression

Compute least squares estimates of one bounded or two ordered isotonic regression curves

Concurrent Generation of Ordinal and Normal Data with Given Correlation Matrix and Marginal Distributions

Selection and/or Smoothing of Ordinal Predictors

An R Interface to the Onigmo Regular Expression Library

Connector to the Objective Revision Evaluation Service (ORES)

Open Reading Frames in Genomics

Organising Projects

Genome wide annotation for Anopheles

Genome wide annotation for Arabidopsis

Genome wide annotation for Bovine

Genome wide annotation for Worm

Genome wide annotation for Canine

Genome wide annotation for Fly

Genome wide annotation for Zebrafish

Genome wide annotation for E coli strain K12

Genome wide annotation for E coli strain Sakai

Genome wide annotation for Chicken

Genome wide annotation for Human

A data package containing annotation data for org.Hs.ipi.db

Genome wide annotation for Mouse

Genome wide annotation for Rhesus

Genome wide annotation for Malaria

Genome wide annotation for Chimp

Genome wide annotation for Rat

Genome wide annotation for Yeast

Genome wide annotation for Streptomyces coelicolor

Genome wide annotation for Pig

Genome wide annotation for Toxoplasma gondii

Genome wide annotation for Xenopus

dplyr-based Access to Bioconductor Annotation Resources

Software to enable the smooth interfacing of different database packages

Organic Mass Spectrometry

Helper Functions for Org Files

Order-restricted Information Criterion-based Clustering Algorithm

Support for orientation data

Generalized Framework for Cross-Validation

Fast Spatial Ancestry via Flexible Allele Frequency Surfaces

Fetch Species Origin Data from the Web

Operations Research LOCational Analysis Models

Spanish version of orloca package. Modelos de localizacion en investigacion operativa

ORMDR

Advanced Plotting of Ordinal Regression Models

Rigorous - DICOM Input / Output

Rigorous - NIfTI + ANALYZE + AFNI : Input / Output

Rigorous - Positron Emission Tomography

Order Restricted Assessment Of Microarray Titration Experiments

Southern Ocean Frontal Distributions (Orsi)

Converting Odds Ratio to Relative Risk in Cohort Studies with Partial Data Information

Multivariate Logistic Regressions Using Orthogonalized Residuals.

An Orthogonality Constrained Optimization Approach for Semi-Parametric Dimension Reduction Problems

Orthogonal B-Spline Basis Functions

Dynamic Panel Models with Orthogonal Reparameterization of Fixed Effects

Collection of functions for orthogonal and orthonormal polynomials

OSAT: Optimal Sample Assignment Tool

Orthodromic Spatial Clustering

Generation of Customizable, Discretized Time Series of Oscillating Species

Oscope - A statistical pipeline for identifying oscillatory genes in unsynchronized single cell RNA-seq

One-Sided Cross-Validation

Orthogonal Signal Deconvolution for Spectra Deconvolution in GC-MS and GCxGC-MS Data

Design and analysis of observational studies

Finds an Optimal System of Distinct Representatives

Recursive Quoted Language Expansion

Open Source Initiative API Connector

OpenStreetMap and R

Import 'OpenStreetMap' Data as Simple Features or Spatial Objects

Object Oriented Simulator of Marine Ecosystems

Bespoke Images of 'OpenStreetMap' Data

Add a Scale Bar to 'OpenStreetMap' Plots

Quadratic Programming Solver using the 'OSQP' Library

Interface Between R and the OpenStreetMap-Based Routing Service OSRM

Wrapper for the 'OSRM' API

Temporal Estimation of Isotopic Values

Over Sampling for Time Series Classification

Mean Partition, Uncertainty Assessment, Cluster Validation and Visualization Selection for Cluster Analysis

Optimal Trees Ensembles for Regression, Classification and Class Membership Probability Estimation

Inference for Optimal Transport

An R Wrapper for the 'OpenTripPlanner' REST API

Robust Model-Based Clustering

Variable Selection for Optimal Treatment Decision

Online Time Series Anomaly Detectors

Provides structure and functions for the analysis of OTU data

Summarizing OTU Table Regarding the Composition, Abundance and Beta Diversity of Abundant and Rare Biospheres

North Temperate Lakes - Microbial Observatory 16S Time Series Data and Functions

Over Time Variable Plots

Ornstein-Uhlenbeck Models for Phylogenetic Comparative Hypotheses

Bayesian Reconstruction of Disease Outbreaks by Combining Epidemiologic and Genomic Data

A Collection of Disease Outbreak Data

Basic Tools for the Analysis of Disease Outbreaks

AAPOR Survey Outcome Rates

Outlier detection using quantile regression on the M-A scatterplots of high-throughput data

Outlier Detection using quantile regression for Censored Data

Outlier Detection

Outlier Detection for Multi-replicated High-throughput Data

Tests for outliers

Draws Overview of Outliers (O3) Plots

Regression Table for Publication

Analysis of Evolutionary Rates in an OU Framework

Estimates of Coefficient of Overlapping for Animal Activity Patterns

Estimation of Overlapping in Empirical Distributions

Test Overlapping of Polygons Against Random Rotation

Tools for Writing MCMC

Open Welfare Data Brazil

Optimal Weight Exchange Algorithm for Optimal Designs for Three Models

OpenWeatherMap API Wrapper

Interface to OGC Web-Services (OWS)

Interface to 'OxCal' Radiocarbon Calibration

Oxycline Index from Matrix Echograms

Processing of Oxy-Bisulfite Microarray Data

Plot the Australian Coastline and States