An R package to convert data sets for import into JAGS, WinBUGS and OpenBUGS and to generate data.frames for predicting the effects of particular variables.
A Suite of Checks for Identification of Potential Errors in a Data Frame as Part of the Data Cleaning Process
Data Cloud Geometry (DCG): Using Random Walks to Find Community Structure in Social Network Analysis
Differential Co-expression Analysis and Differential Regulation Analysis of Gene Expression Microarray Data
Dynamic Deterministic Effects Propagation Networks: Infer signalling networks for timecourse RPPA data.
Deconvolution density estimation with adaptive methods for a variable prone to measurement error
Identification of dichotomous differential item functioning (DIF) using Angoff's Delta Plot method
Calculation of Gst and D values characterizing the genetic differentiation between populations.
Statistical Inference for Parametric and Semiparametric Models Based on Dependently Truncated Data
Annotation-agnostic differential expression analysis of RNA-seq data at base-pair resolution via the DER Finder approach
Construction of Optimally Matched Samples for Randomized Experiments and Observational Studies that are Balanced and Representative by Design
Implementation of the DetMCD Algorithm (Robust and Deterministic Estimation of Location and Scatter)
DEXUS - Identifying Differential Expression in RNA-Seq Studies with Unknown Conditions or without Replicates
Diagnostic Plot and Multivariate Summary Statistics of Weighted Samples from Importance Sampling
Defines some physical constants and dielectric functions commonly used in optics, plasmonics.
Inference and Analysis for Diffusion Processes via Data Imputation and Method of Lines
Detection of Dichotomous Differential Item Functioning (DIF) and Differential Distractor Functioning (DDF) by Non-Linear Regression Models
An application programming interface for generating null models of social contacts based on individuals' space use
Data-Informed Link Strength. Combine multiple-relationship networks into a single weighted network. Impute (fill-in) missing network links.
DiscML: An R package for estimating evolutionary rates of discrete characters using maximum likelihood
Estimate the Gene Expression Levels and Component Proportions of the Normal, Stroma (Immune) and Tumor Components of Bulk Tumor Samples
Functions for re-sampling a community matrix to compute diversity indices at different sampling levels.
DMRforPairs: identifying Differentially Methylated Regions between unique samples using array based methylation profiles
A tool for creating and analysing DNA barcodes used in Next Generation Sequencing multiplexing experiments
doBy - Groupwise summary statistics, general linear contrasts, population means (least-squares-means), and other utilities
ADI (Average Dominance Index), Social Network Graphs with Dual Directions, and Music Notation Graph
Differential Exon Usage Test for RNA-Seq Data via Empirical Bayes Shrinkage of the Dispersion Parameter
Dirichlet Process Mixtures (DPM) and related models using Gaussian Graphical Models (GGM) for Sparse covariance estimation in heterogeneous samples
Synthetic Expression Data for Gene Regulatory Network Inference from the 2009 DREAM4 challenge
Regularized Estimation of Dynamic Linear Regression in the Presence of Autocorrelated Residuals (DREGAR)
Drivernet: uncovering somatic driver mutations modulating transcriptional networks in cancer
Dual Empirical Likelihood Inference under Density Ratio Models in the Presence of Multiple Samples
A Language to Facilitate the Creation and Visualization of Two- Dimensional Dynamical Systems
Dunnett-Tukey-Kramer Pairwise Multiple Comparison Test Adjusted for Unequal Variances and Unequal Sample Sizes