Predicting Causal Direction from Dependency Features

Interactive Genome Browser with R

Interactive Heat Maps Using 'htmlwidgets' and 'D3.js'

Two Sample Test with Wasserstein Metric

Tools for creating D3 JavaScript network, tree, dendrogram, and Sankey graphs from R

Interactive Charts of Nested and Hierarchical Data with 'D3.js'

Seamless 'D3Plus' Integration

'd3.js' Utilities for R

Create Interactive Collapsible Trees with the JavaScript 'D3' Library

Dimensionality Assessment using Minimum Rank Factor Analysis

Data Analysis and Graphics Data and Functions

Data Sets and Functions, for Demonstrations with Expression Arrays and Gene Sequences

Data Sets and Functions, supplementary to DAAG

Calculating Data Agreement Criterion Scores to Rank Experts Based on Their Beliefs

Data Analysis with Ceiling and/or Floor Data

Three-Way Data Analysis Through Densities

Accurate, high-resolution sample inference from amplicon sequencing data

Functions Useful in the Design and ANOVA of Experiments

Design and Analysis of Experiments with R

Diff, Patch and Merge for Data.frames

Data analysis for forensic scientists

Learning directed acyclic graphs (DAGs) through bootstrap aggregating

Consensus genetic maps

Graphical Analysis of Structural Causal Models

dagLogo

R functions for directed acyclic graphs

Diagnostic accuracy of classification models.

Dynamical Assembly of Islands by Speciation, Immigration and Extinction

Data Analysis and Knowledge Spaces

Descriptive mAchine Learning EXplanations

Automating the Fitting of Double Linear Mixed Models in 'JAGS'

The DALY Calculator - Graphical User Interface for Probabilistic DALY Calculation in R

Data Analysis Metabolomics

Efficient design and analysis of factorial two-colour microarray data

Neural Network Numerai

Data Mining for RNA-seq data: normalization, feature selection and classification

Dave Armstrong's Miscellaneous Functions

Dynamic Assembly Model of Colonization, Local Extinction and Speciation

Dams in the United States from the National Inventory of Dams (NID)

Dandelion Plot for R-Mode Exploratory Factor Analysis

Discriminant Analysis via Projections

Tools for the Differential Analysis of Proteins Abundance with R

Data accompanying the DAPAR and Prostar packages

Package for Deep Architectures and Restricted Boltzmann Machines

The Analysis of Dark Adaptation Data

Tools to Work with the 'Dark Sky' 'API'

Denoising Algorithm based on Relevance network Topology

Importing and Analysing Snp and Silicodart Data Generated by Genome-Wide Restriction Fragment Analysis

Statistical Tools to Analyze Your Darts Game

Distributed Annotation System in R

Tools for Reading, Processing and Writing 'DSSAT' Files

Tools for Data Manipulation

Extension of `data.frame`

General Purpose Hierarchical Data Structure

Functions and Add-Ins for Working with 'data.world' Data Sets and Projects

Functional Data Analysis with Linear Differential Equations

Wrapper for TC/Govdata360 API

File-Based Access to Large Matrices Stored on HDD in Binary Format

Swarm Intelligence for Self-Organized Clustering

Tools for Checking Data Consistency

Data Checking

Data Cleaning

Tools for Easily Combining and Cleaning Data Sets

Compare Two Data Frames and Summarise the Difference

R Client for 'Datadog' API

Divide and Recombine for Large, Complex Data

Make it Easier to Enter Questionnaire Data

Data Explorer

Fast data frames

Constrained data frames and homogenous list classes

Write Data Frames to Xls Files

Estimating Finite State Machine Models from Data

Export Data from R so DataGraph can Read it

An R package to convert data sets for import into JAGS, WinBUGS and OpenBUGS and to generate data.frames for predicting the effects of particular variables.

Import Multiple File Types

A Suite of Checks for Identification of Potential Errors in a Data Frame as Part of the Data Screening Process

A system for mapping foreign objects to R variables and environments

Create Interactive Web Maps with the 'JavaScript Datamaps' Library

Unified access to your data sources

Merging of Overlapping and Inconsistent Data

Create and Append a Data Dictionary for an R Dataset

Easily Source Publicly Available Data on Derivatives

R Interface to the DataONE REST API

DataONE R Client Libraries

A Flexible Container to Transport and Manipulate Data and Associated Resources

R Tools for Data Copy-Pasta

Automated Data Preparation

Performs variable level data quality checks and generates summary statistics

Retrieval Functions for USGS and EPA Hydrologic and Water Quality Data

'DataRobot' Predictive Modeling API

Datasets from the Datasaurus Dozen

Switzerland's Data Series in One Place

Interface for Loading Datasets

Tools to Complete Euclidean Distance Matrices

Data Assimilation

An Implementation of a SAS-Style Data Step

Implementation of Core Data Structures

An Interface to DATASUS System

Timestamps and Advanced Plotting

Client for Dataverse 4 Repositories

Human readable data presentation

Visualizations of High-Dimensional Data

Functions for Handling Dates

Nominal Dates, Times, and Durations

Utilities for Dates and Times

Deconvolution Analysis Tool for Dynamic Contrast Enhanced MRI

Interface to the 'Datorama' API

Functions for "Data Analysis in Vegetation Ecology"

Retrieval from the DAVID bioinformatics data resource into R

Data and analysis scripts for David, Huber et al. yeast tiling array paper

The Davies Quantile Function

Discriminant Analysis with Additional Information

Interface to the 'Daymet' Web Services

A Database Exploration Tool with Assisted Querying and Schema Exploration

Discrete Bayesian Additive Regression Trees Sampler

Differential Binding of Transcription Factor with ChIP-seq

Provides a graphical user interface to connect with databases that use MySQL.

Goodness-of-fit and two sample comparison tests using sample entropy

Test for joint assessment of normality

Detecting Breakpoints and Estimating Segments in Trend

A Tool to Ensure the Validity of Database Writes

DBF test of no difference between groups

methods of distance-based gene set functional enrichment analysis.

'DBHYDRO' Hydrologic and Water Quality Data

R Database Interface

Testing 'DBI' Back Ends

Discrete Beta Kernel Graduation of Mortality Data

Compute the NPMLE of distribution from doubly censored data

Discrete Boosting Logistic Regression

Distance-Based Measures of Spatial Structures

Simplifies Plotting Data Inside Databases

A 'dplyr' Back End for Databases

Density Based Clustering of Applications with Noise (DBSCAN) and Related Algorithms

Distance-Based Statistics

Inferring Condition-Specific Networks via Differential Network Inference

Dynamic Correlation Analysis for High Dimensional Data

Analyzing Dichotomous Choice Contingent Valuation Data

Differential Community Detection in Paired Biological Networks

A Package for Image Analysis of DCE-MRI (S4 Implementation)

Data Cloud Geometry (DCG): Using Random Walks to Find Community Structure in Social Network Analysis

Differential Co-expression Analysis and Differential Regulation Analysis of Gene Expression Microarray Data

Analysis of Ontologies and Protein Domain Annotations

Distance-correlation based Gene Set Analysis for longitudinal gene expression profiles

Methods for Reading dChip Files

DChIPRep - Analysis of chromatin modification ChIP-Seq data with replication

Claims Reserving under the Double Chain Ladder Model

Data Cloning and MCMC Tools for Maximum Likelihood Methods

Sequential Permutation Test

Functions for the Detection of Spatial Clusters of Diseases

Model-Based Detection of Disease Clusters

Data Converter Module

Information Matrix for Diagnostic Classification Models

Hierarchical Models Made Easy with Data Cloning

Modify Data Using Externally Defined Modification Rules

Attribute profile estimation using Diagnostic Classification Models and MCMC

List Linear n-Peptide Constraints for Overlapping Protein Regions

Distance Covariance and Correlation for Time Series Analysis

Conventional Cross-validation statistics for climate-growth model

Depth-Based Classification and Calculation of Data Depth

The ddCt Algorithm for the Analysis of Quantitative Real-Time PCR (qRT-PCR)

Diversity-Dependent Diversification

Wrapper for the Duke Deploy REST API

Dynamic Deterministic Effects Propagation Networks: Infer signalling networks for timecourse RPPA data.

Distinguish direct and indirect interactions with Graphical Modelling

Variance Stabilization by Data-Driven Haar-Fisz (for Microarrays)

DDI with R

Death Registration Coverage Estimation

Analysis and Visualization of Droplet Digital PCR in R and on the Web

Clustering algorithm for ddPCR data

Distributed Data Structures in R

Learning Principal Graphs with DDRTree

Data Driven Smooth Tests

Statistical Deadband Algorithms Comparison

Learning Bayesian Networks with Mixed Variables

Deconvolution density estimation with adaptive methods for a variable prone to measurement error

Bayesian Inference for Differential Equations

debrowser: Interactive Differential Expresion Analysis Browser

MVB's debugger for R

Debug R Packages

Get Energy Data from the UK Dept of Energy and Climate Change

DEComposition of Indirect and Direct Effects

Bindings for 'Mapbox' Ear Cutting Triangulation Library

Tools for curating, analyzing, and manipulating biological sequences

Statistical Decision Analysis

Calculate and Plot Decision Curves

Quantitative Support of Decision Making under Uncertainty

Differential Co-Expression and Differential Expression Analysis

Decode Coded Variables to Plain Text and the Other Way Around

A tool for differential expression analysis and DEGs based investigation to complex diseases by bi-clustering analysis

Time Series Prediction with PSF and Decomposition Methods (EMD and EEMD)

Global-Value-Chain Decomposition

Deconvolution Estimation in Measurement Error Models

Deconvolution of Heterogeneous Tissue Samples for mRNA-Seq data

Identifies Signatures Present in a Tumor Sample

Empirical Bayes Estimation Strategies

Fit and Deploy DECORATE Trees

Differential Expression via Distance Summary for Microarray Data

A Data Analysis GUI for R

Additional dialogs and functions for Deducer

Deducer Plug-in Example

Reliability and factor analysis plugin

Deducer for spatial data analysis

Add Survival Dialogue to Deducer

Deducer GUI for Text Data

Deductive Correction, Deductive Imputation, and Deterministic Correction

Data Correction and Imputation Using Deductive Methods

DeepBlueR

Deep Boosting Ensemble Modeling

An Implementation of Deep Neural Network for Regression and Classification

deep learning toolkit in R

Detection of subclonal SNVs in deep sequencing data.

Change the Default Arguments in R Functions

Create Global Function Defaults

Create FDA-Style Data and Program Definitions

Differential gene expression data formats converter

Integration of One-Dimensional Functions with Double Exponential Formulas

An Amphibian Systematics Tool

Detection of differentially expressed genes.

Parameter Inference for Systems of Differential Equation

Two-sample tests on a graph

Models for Skewed Count Distributions Relevant to Networks

Report of DEG analysis

Identify Differentially Expressed Genes from RNA-seq data

Detection of Isotope Pattern of a Mass Spectrometric Measurement

Multiple Imputation for Recurrent Events

Statistical Functions for the Delaporte Distribution

Delayed operations on array-like objects

Sample Size and Power Calculations using the APPLE and SEPPLE Methods

Functions that Apply to Rows and Columns of 'DelayedMatrix' Objects

Delaunay Triangulation and Dirichlet (Voronoi) Tessellation

Estimates Pseudotimes for Single Cell Expression Data

Estimation of Multivariate Densities Using Adaptive Partitions

Measure of Agreement Between Two Raters

deltaGseg

Identification of Dichotomous Differential Item Functioning (DIF) using Angoff's Delta Plot Method

Calculation of Delta R Values

DeMAND

Functions to Calculate Relatedness on Diploid Genetic Data

Calculation of Gst and D values characterizing the genetic differentiation between populations.

Differential Expression from Multiple Indicators

Deming, Thiel-Sen and Passing-Bablock Regression

Analysis of Age-Structured Demographic Models

Forecasting Mortality, Fertility, Migration and Population Data

Kernel Density Estimation for Demonstration Purposes

DEvelopment (of Multi-Linear QSPR/QSAR) MOdels VAlidated using Test Set

Extending 'dendrogram' Functionality in R

Faster dendrogram manipulation using Rcpp

Nonlinear Methods for Analyzing Dendroclimatological Data

Extra Functions to Cut, Label and Colour Dendrogram Clusters

Analyzing Dendrometer Data

A Set of Tools for Calculating Spatial Synchrony Between Tree-Ring Chronologies

Linear and Nonlinear Methods for Analyzing Dendroclimatological Data

Dendrogram seriation: ordering for visualisation

Modular Leaf Ordering Methods for Dendrogram Nodes

Parameter Estimates and Real-Time Prediction of a Single Dengue Outbreak

Differential Expression Analysis Using a Bottom-Up Model

Regularized Low Rank Matrix Estimation

Statistical Analyses of De Novo Genetic Variants

Visualization of multivariate, functions, sets, and data

Functional Linear Mixed Models for Densely Sampled Data

Density.T.HoldOut: Non-combinatorial T-estimation Hold-Out for density estimation

Clustering by Fast Search and Find of Density Peaks

Dens-Based Method for Partial Correlation Estimation in Large Scale Brain Networks

Density Ratio Estimation

Density Strips and Other Methods for Compactly Illustrating Distributions

Global Optimization by Differential Evolution

Differential Evolution Optimization in Pure R

Differential Enrichment analysis of Proteomics data

Statistical Methods for the Analysis of Dependently Truncated Data

Deconvolute Mixed Genomes with Unknown Proportions

Dependent Mixture Models

Dependent Mixture Models - Hidden Markov Models of GLMs and Other Distributions in S4

Nonparametric Depth Functions for Multivariate Analysis

Multivariate Analogy of Quantiles

Statistical Depth Functions for Multivariate Analysis

Depth Tools Package

Stacks, Queues, and 'Deques' for R

Annotation-agnostic differential expression analysis of RNA-seq data at base-pair resolution via the DER Finder approach

Processed BigWigs from BrainSpan for examples

derfinder helper package

Plotting functions for derfinder

Symbolic Differentiation

Functions and R Code to Accompany Derivatives Markets

Discrete Event Simulation

Manipulate DESCRIPTION Files

Differential Enrichment Scan 2

Seasonal Adjustment by Frequency Analysis

Descriptive Statistics

An Interface to the DescribeDisplay GGobi Plugin

Describe Data in R Using Common Descriptive Statistics

Descriptive Statistics OpenBudgets.eu

Generate Descriptive Statistics & Explore Statistical Distributions

Produce Descriptive and Comparative Tables Easily

Tools for Descriptive Statistics

Some Functions to be Used as Shortcuts in 'RStudio'

Optimal deseasonalization for geophysical time series using AR fitting

Differential gene expression analysis based on the negative binomial distribution

Computational tool for designing genetical genomics experiments.

Finding Optimal Block Designs for a Generalised Linear Mixed Model

Matched Samples that are Balanced and Representative by Design

Design Patterns in R to build reusable object-oriented software

Desirability Functions for Ranking, Selecting, and Integrating Data

Function Optimization and Ranking via Desirability Functions

Desirability functions in R

Bagging with Distance-based Regression for Differential Gene Expression Analyses

Solvers for Initial Value Problems of Differential Equations ('ODE', 'DAE', 'DDE')

Poor prognosis colon cancer is defined by a molecularly distinct subtype and precursor lesion

Estimation of Diagonal Elements of Sparse Precision-Matrices

Plotting Field Plans for Agricultural Experiments

Creates diffusion maps

DEsubs: an R package for flexible identification of differentially expressed subpathways using RNA-seq expression experiments

Analyzing Wildlife Data with Detection Error

Detect Data Containing Personally Identifiable Information

Detect Runs of Homozygosity and Runs of Heterozygosity in Diploid Genomes

Test Set for Differential Equations

Implementation of the DetMCD Algorithm (Robust and Deterministic Estimation of Location and Scatter)

Density Estimation and Random Number Generation with Distribution Element Trees

Suite of Deterministic and Robust Algorithms for Linear Regression

Start the detrendeR Graphical User Interface (GUI)

Detrend Images

A computer program to detect markers responding to selection

Compare Detrital Zircon Suites

EMF Graphics Output Device

Clear and Condense Argument Check for User-Defined Functions

Data sets from Devore's "Prob and Stat for Eng (6th ed)"

Data sets from Devore's "Prob and Stat for Eng (7th ed)"

Quantify the Relationship Between Development Rate and Temperature in Ectotherms

Tools to Make Developing R Packages Easier

Inference of differential exon usage in RNA-Seq

Data Management and Analysis of Tests

DEXUS - Identifying Differential Expression in RNA-Seq Studies with Unknown Conditions or without Replicates

Convert a dataframe to JSON

Phase I/II Adaptive Dose-Finding Design for Combination Studies

Compare Two Dataframes and Return Adds, Changes, and Deletes

Dose-finding by the continual reassessment method

Explore data.frames by plotting NA and classes of each variable

Differential Functioning of Items and Tests

Phase I/II Adaptive Dose-Finding Design for MTA

Derivative-Free Optimization

Decision Forest

Gene Selection

Extrapolation and Bridging of Adult Information in Early Phase Dose-Finding Paediatrics Studies

Phase I Control Charts (with Emphasis on Distribution-Free Methods)

Bayesian Dose-Finding Designs using Pharmacokinetics (PK) for Phase I Clinical Trials

Capture-Recapture Estimation using Bayesian Model Averaging

Genetic Algorithm with Incomplete Dominance for Feature Selection

Differential Gene Correlation Analysis

Discrete Global Grids for R

Differential Geometric Least Angle Regression

Double Generalized Linear Models

Dynamic Graphical Models

Simulating Data for PLS Mode B Structural Models

Dynamic Estimation of Group-Level Opinion

Data for the 'dgo' Package

Discrete Goodness-of-Fit Tests

3D Forest Simulation Visualization Tool

Residual Diagnostics for Hierarchical (Multi-Level / Mixed) Regression Models

Differential Hub Gene Analysis

Double Hierarchical Generalized Linear Models

Calculate Key DHS Indicators

Independence Testing via Hilbert Schmidt Independence Criterion

Deficit Index (DI)

Diagnostic Plot and Multivariate Summary Statistics of Weighted Samples from Importance Sampling

Block Diagonal Extraction or Replacement

Functions for Visualising Simple Graphs (Networks), Plotting Flow Diagrams

Graph/Network Visualization

Export DiagrammeR Graphviz Graphs as SVG

Diagnostic test summary measures for three ordinal groups

Diallel Analysis with R

Beads Summary Plot of Ranges

Calculate probabilities of various dice-rolling events

Downloads Job Descriptions from Dice.com

Designs of Computer Experiments

Construction and Evaluation of Metamodels

Kriging Methods for Computer Experiments

Kriging-Based Optimization for Computer Experiments

Diverse Cluster Ensemble in R

Plot Methods for Computer Experiments Design and Surrogate

Color Schemes for Dichromats

Dictionaries for reading microdata surveys from IBGE

A Simple Implementation and Demonstration of Gradient Boosting

Bibliographic Network Analysis

Compute Recency Frequency Monetary Scores for your Customer Data

Metrics for Continuous Efficiency

Defines some physical constants and dielectric functions commonly used in optics, plasmonics.

R companion to "Curve and Surface Fitting with Splines"

R Interface to the ZEIT ONLINE Content API

Detection of Differential Item Functioning (DIF) in Rasch Models by Boosting Techniques

Differential Coexpressed Networks

Difference of Two Precision Matrices Estimation

Statistics: What's the Difference?

Differential Binding Analysis of ChIP-Seq Peak Data

Differential Co-expression Analysis

Analyzing and Visualizing Differential Correlation Networks in Biological Data

Calculates Confidence Intervals for two Dependent Proportions

Fast and Scalable Learning of Sparse Changes in High-Dimensional Gaussian Graphical Model Structure

Functions from the book Solving Differential Equations in R

Metrics of Difference for Comparing Pairs of Maps

Performs differential gene expression Analysis

Differential Analyis of Hi-C Data

Diffusion IRT Models for Response and Response Time Data

DiffLogo: A comparative visualisation of biooligomer motifs

Identifying differential DNA loops from chromatin topology data

Example ChIA-PET Datasets for the diffloop Package

Detecting Gene Probes with Different Means or Variances Between Two Groups

Multi-Fidelity Computer Experiments Using the Tuo-Wu-Yu Model

Detection of Statistically Significant Changes in Complex Biological Networks

Diffs for R Objects

Easy Differential Privacy

Display Differences Between Two Files using Codediff Library

Baseline Identification and Peak Decomposition for x-Ray Diffractograms

Projects for Text Version Comparison and Analytics in R

Visualization for 'diffrprojects'

Forecast the Diffusion of New Products

Diffusion map

Inference and Analysis for Generalized Quadratic Diffusions

Inference and Analysis for Diffusion Processes via Data Imputation and Method of Lines

Inference and Analysis for Jump Generalized Quadratic Diffusions

Network Diffusion Algorithms

Diffusion scores on biological networks

A Penalty Approach to Differential Item Functioning in Rasch Models

DIF and DDF Detection by Non-Linear Regression Models

Collection of Methods to Detect Dichotomous Differential Item Functioning (DIF)

Item Focused Trees for the Identification of Items in Differential Item Functioning

GUI tool for analyzing 2D DIGE data

Create Compact Hash Digests of R Objects

Inference of Genetic Variants Driving Cellular Phenotypes

Example data for the diggit package

An application programming interface for generating null models of social contacts based on individuals' space use

Estimate Copy Number for Digital PCR

Use Data from Published Plots in R

Data-Informed Link Strength. Combine multiple-relationship networks into a single weighted network. Impute (fill-in) missing network links.

DIME (Differential Identification using Mixture Ensemble)

A Framework for Dimensionality Reduction

Bayesian Estimation of DINA Model

DiNAMIC A Method To Analyze Recurrent DNA Copy Number Aberrations in Tumors

Hartigan's Dip Test Statistic for Unimodality - Corrected

Bayesian Clustering of Multivariate Data Under the Dirichlet-Process Prior

Directed Weighted Clustering Coefficient

Estimating Controlled Direct Effects for Explaining Causal Findings

Directional Statistics

Direct Labels for Multicolor Plots

A dynamic visualization tool of multi-level data

Direction Analysis for Pathways and Kinases

Adjusted Means and Proportions by Direct Standardisation

Dirichlet-Multinomial Mixture Model Machine Learning for Microbiome Data

Build Dirichlet Process Objects for Bayesian Modelling

Dirichlet Regression in R

Directional Metropolis Hastings Algorithm

Estimation in Dirichlet-Multinomial distribution.

Discrete associated kernel estimators

Discourse API Client

Discrete Laplace Exponential Family

Discrete Laplace Mixture Inference using the EM Algorithm

DiscML: An R package for estimating evolutionary rates of discrete characters using maximum likelihood

Discordance and Concordance of Transcriptomic Responses

Functions for Discordant Kinship Modeling

The Discordant Method: A Novel Approach for Differential Correlation

Coordinate-Descent Algorithm for Learning Sparse Discrete Bayesian Networks

Discrete Inverse Weibull Distribution

Discrete Laplace Distributions

Multiple testing procedures for discrete test statistics

Create and Manipulate Discrete Random Variables

Discrete Weibull Distributions (Type 1 and 3)

Data preprocessing, discretization for classification.

Discrimination of Alternative Reproductive Tactics (ARTs).

Tools of the Trade for Discriminant Analysis

Discrete Time Survival Analysis

Modelling Spatial Variation in Disease Risk for Areal Data

Estimate the Gene Expression Levels and Component Proportions of the Normal, Stroma (Immune) and Tumor Components of Bulk Tumor Samples

Calculate Dissimilarity Matrix for Dataset with Mixed Attributes

A Pipeline to Analyze Resistance and Tolerance from Drug Disk Diffusion Assays

Disk Memoisation For R

Species Distribution Modeling

2D Hausdorff and Simplex Dispersion Orderings

Disparity Filter Algorithm for Weighted Networks

displayHTS

Modelling Dispersion in GLM

Create Disposable R Packages for Testing

Measuring Disparity

Spatial Downscaling using the Dissever Algorithm

Utilities for making pairwise comparisons of multivariate data

Distance Sampling Detection Function and Abundance Estimation

Calculates Study Size Required for Distance Sampling

Tools for Distance Metrics

DiSTATIS Three Way Metric Multidimensional Scaling

Computations over Distributed Data without Aggregation

Discrete Distribution Approximations

Download Occurrence Data of Vascular Plants in Germany from the FLORKART Database

Distribution-free confidence region (distfree.cr)

Method Functions for Confidence Intervals and to Distill Information from an Object

Distance Between Phylogenetic Histories

Object Oriented Implementation of Distributions

Documentation for 'distr' Family of R Packages

S4 Classes for Elliptically Contoured Distributions

Extensions of Package 'distr'

Four Essential Functions for Statistical Distributions Analysis: A New Functional Approach

Distribution Utilities

Object Oriented Implementation of Probability Models

Distributed Multinomial Regression

Estimate and Manage Empirical Distributions

Distribution Classes for Distributions from Rmetrics

Simulation Classes Based on Package 'distr'

Extensions of Package 'distr' for Teaching Stochastics/Statistics in Secondary School

Estimation and Testing Classes Based on Package 'distr'

Provides tools for quality checks of georeferenced plant species accessions.

Diversity Estimator

Dive Analysis and Calibration

Diversity Measures for Complex Systems

Comparative 'Phylogenetic' Analyses of Diversification

A Comprehensive, General Purpose Population Genetics Analysis Package

Building Diversity Models from Multiple Species Occupancy Models

Functions for re-sampling a community matrix to compute diversity indices at different sampling levels.

Get Images Out of DICOM Format Quickly

HRM Diversity Assay Analysis Tool

Tools for Analysis of Diversity and Similarity in Biological Systems

Nearest Neighbour Contingency Table Analysis

Distance Measure Based Judgment and Learning

Client for the 'DKAN' API

Diffusion Kernels on a Set of Genotypes

The double Kolmogorov-Smirnov package for evaluating multiple testing procedures.

Time Series Regression Models with Distributed Lag Models

Implementation of Adaptive or Non-Adaptive Differentiable Lasso and SCAD Penalties in Linear Models

Diffuse large B-cell lymphoma expression data

Allow Access to the 'Dlib' C++ Library

Bayesian and Likelihood Analysis of Dynamic Linear Models

Detection Localization Mapping for QTL

Generalized Dynamic Linear Modeler

Data-Limited Methods Toolkit

Distributed Lag Non-Linear Models

Distributed-Lag Linear Structural Equation Models

Download Stats of R Packages

Dynamic Model Averaging

Differentially Methylated CpG using Hidden Markov Model

Experimental data and documented source code for the paper "A Map of Directional Genetic Interactions in a Metazoan Cell"

Distance Metric Learning in R

Dyadic Mixed Model for Pedigree Data

Daily Based Morgan-Morgan-Finney (DMMF) Soil Erosion Model

Dynamic Modeling and Parameter Estimation in ODE Models

Delete or Merge Regressors for linear model selection.

Differentially Methylated Regions caller

Methylation array and sequencing spatial analysis methods

Data Package for DMRcate package

DMRforPairs: identifying Differentially Methylated Regions between unique samples using array based methylation profiles

DMR Detection by Non-Homogeneous Hidden Markov Model from Methylation Array Data

Delete or Merge Regressors Algorithms for Linear and Logistic Model Selection and High-Dimensional Data

Detection of Differentially Methylated Regions

Detection and inference of differentially methylated regions from Whole Genome Bisulfite Sequencing

Dependency Modeling Toolkit

Mutate Data Frames with Random Variates

Functions and data for "Data Mining with R"

Functions and Data for the Second Edition of "Data Mining with R"

Differential Network Analysis

A tool for creating and analysing DNA barcodes used in Next Generation Sequencing multiplexing experiments

DNA copy number data analysis

DNA Profiling Evidence Analysis

Generating and Testing DNA Sequences

High-throughput prediction of DNA shape features

Tools for Analysing Forensic Genetic DNA Data

Dynamic Network Clustering

Distribution and Equation

Integrative Analysis of Omics Data in Terms of Network, Evolution and Ontology

Estimating Differential Networks under Semiparametric Gaussian Graphical Models

Distributions and Gradients

Differential Network Local Consistency Analysis

Discriminant Non-Negative Matrix Factorization

Simulate Dynamic Networks using Exponential Random Graph Models (ERGM) Family

A set of annotation maps describing the entire Disease Ontology

Analysis of Discretely Observed Linear Birth-and-Death(-and-Immigration) Markov Chains

Data from the GLM Book by Dobson and Barnett

Groupwise Statistics, LSmeans, Linear Contrasts, Utilities

Wraps Docker Python SDK

Easy Dockerfile Creation

Command-Line Interface Specification Language

Optimal Designs for Copula Models

Provides Docstring Capabilities to R Functions

Easily Check Data Consistency and Quality

Automatic Documentation for R packages

Run 'roxygen2' on (Chunks of) Single Code Files

Connect to 'DocuSign' API

Tools for R Markdown to Docx Documents

Extract Data Tables from Microsoft Word Documents

Functions for Acceptance Sampling Ideas originated by H.F. Dodge

Distances on Directed Graphs

Detection of Differential Rhythmicity

Full Factorials, Orthogonal Arrays and Base Utilities for DoE Packages

Creation of Arrays by Mixed Integer Programming

Wrapper Package for Design of Experiments Functionality

Rare Variant Association Test Based on Position Density Estimation

A Universal Foreach Parallel Adaptor using the Future API of the 'future' Package

Geneset enrichment based on InterPro domain signatures

Foreach Parallel Adaptor for 'parallel'

A Package to Calculate and Visualize Dominance Hierarchies

R Console Bindings for the 'Domino Command-Line Client'

Identification and Annotation of Protein Hotspot Residues

Foreach Parallel Adaptor for the Rmpi Package

Supplementary data package for Dona et al. (2013) containing example images and tables

Foreach Parallel Adaptor for the 'parallel' Package

Identify likely duplicate samples from genomic or meta-data

Genotyping and QTL Mapping in DO Mice

Foreach parallel adapter for the rredis package

Generic Reproducible Parallel Backend for 'foreach' Loops

A DownStream Chemo-Proteomics Analysis Pipeline

Disease Ontology Semantic and Enrichment analysis

Planning and Analyzing Dose Finding Experiments

Foreach Parallel Adaptor for the 'snow' Package

Multivariate Dose-Response Meta-Analysis

Compute Statistics Helper Functions

Render and Export DOT Graphs in R

Distribution of Typicality Coefficients

Enhanced Foreign Function Interface Supporting Long Vectors

Load Environment Variables from '.env'

Dot-and-Whisker Plots of Regression Results

Survivor Function Estimation for Doubly Interval-Censored Failure Time Data

Test Against Parametric Regression Function

Differential Exon Usage Test for RNA-Seq Data via Empirical Bayes Shrinkage of the Dispersion Parameter

Kernel Hazard Estimation with Best One-Sided and Double One-Sided Cross-Validation

Functions Ported from 'MMR2' Toolbox Offered in Kevin Dowd's Book Measuring Market Risk

Download Files over HTTP and HTTPS

Downscaling Species Occupancy

A Tool to Downsize Large Workflows for Testing

Dynamic Path Approach

Port of 'Dparser' Package

Dirichlet Process Beta-Binomial Mixture

Digital PCR Analysis

Primal Graphical Lasso

Distribution Pitting

Dendrochronology Program Library in R

A Grammar of Data Manipulation

A 'Teradata' Backend for 'dplyr'

RStudio Addin for Teaching and Learning Data Manipulation Using 'dplyr'

Dirichlet Process Mixtures (DPM) and related models using Gaussian Graphical Models (GGM) for Sparse covariance estimation in heterogeneous samples

Dirichlet Process Mixture model simulation for clustering and image segmentation

Data Package Manager for R

Inference of Parameters of Normal Distributions from a Mixture of Normals

Bayesian Nonparametric Modeling in R

Data Pre-Processing and Visualization Functions for Classification

Print Tabular Data to Graphics Device

Semi- and nonparametric Bayesian Subset Selection Procedures

Dirichlet Process Weibull Mixture Model for Survival Data

Methods for Dimension Reduction for Regression

Dose Response Data Analysis using the 4 Parameter Logistic (4pl) Model

Data Frames in R for Make

'Drat' R Archive Template

Visualising R syntax through graphics

Package to Draw Protein Schematics from Uniprot API output

Discriminative Random Walk with Restart

Data Representation: Bayesian Approach That's Sparse

Analysis of Dose-Response Curves

Synthetic Expression Data for Gene Regulatory Network Inference from the 2009 DREAM4 challenge

Regularized Estimation of Dynamic Linear Regression in the Presence of Autocorrelated Residuals (DREGAR)

data and software for checking Dressman JCO 25(5) 2007

Dose-Response Data Evaluation

Doubly Robust Generalized Estimating Equations

DR-Integrator

Drift Correcting Water Quality Data

Distinguishing drift and natural selection as causes of phenotypic differentiation

R Driver for Apache Drill

Imputing Dropout Events in Single-Cell RNA-Sequencing Data

Differential transcript usage and tuQTL analyses with Dirichlet-multinomial model in RNA-seq

Discontinuous Regression and Image Processing

Drivernet: uncovering somatic driver mutations modulating transcriptional networks in cancer

Multiplex Immunoassays Data Analysis

Regression and association models for repeated categorical data

Dual Empirical Likelihood Inference under Density Ratio Models in the Presence of Multiple Samples

Utilities for Handling Single-Cell Droplet Data

Affymetrix Drosophila Genome Array annotation data (chip drosgenome1)

drosgenome1cdf

Probe sequence data for microarrays of type drosgenome1

Affymetrix Drosophila Genome 2.0 Array annotation data (chip drosophila2)

drosophila2cdf

Probe sequence data for microarrays of type drosophila2

Dimensionality Reduction via Regression

Dose-Response Modeling with Smoothing Splines

Doubly-Robust Nonparametric Estimation and Inference

Implementation of a Machine Learning Framework for Predicting Drugs Side Effects

Comparison of disease and drug profiles using Gene set Enrichment Analysis

Drug versus Disease Data

Dynamical Systems Approach to Infectious Disease Epidemiology

Discretization-Based Direct Random Sample Generation

Bayesian subgroup analysis in clinical trials

Dynamic Systems Estimation (Time Series Package)

DSE (unbundled transition package).

Integration of Disease Similarity Methods

Distributed Storage and List

Data Science Labs

Dynamic Slicing

Density Surface Modelling of Distance Sampling Data

A Language to Facilitate Simulation and Visualization of Two-Dimensional Dynamical Systems

Spatial Modelling for Distance Sampling Data

dsQTL, data excerpt from Degner et al. 2012 Nature letter

Tests and Confidence Intervals on Directly Standardized Rates for Several Methods

Dispersion shrinkage for sequencing data

Distance Sampling Simulations

Analyze Two Choice Reaction Time Data with the D*M Method

Recursive Partitioning for Discrete-Time Survival Trees

Direct Surrogate Variable Analysis

A Wrapper of the JavaScript Library 'DataTables'

Dynamic Transcriptome Analysis

Simplifying Descriptive Frequencies and Statistics

Cell Type Deconvolution from Gene Expressions

Comparison of Binary Diagnostic Tests in a Paired Study Design

Doubly truncated data analysis

Analysis of Diffusion Weighted Imaging (DWI) Data

Dunnett-Tukey-Kramer Pairwise Multiple Comparison Test Adjusted for Unequal Variances and Unequal Sample Sizes

Suite of functions related to discrete-time discrete-state Markov Chains

Data Table Back-End for 'dplyr'

Estimation and Comparison of Dynamic Treatment Regimes

Decision Trees

Learning Algorithms for Dynamic Treatment Regimes

DTR Estimation and Inference via G-Estimation, Dynamic WOLS, and Q-Learning

Discrete Trigonometric Transforms

Dynamic Time Warping Algorithms

Time Series Clustering Along with Optimizations for the Dynamic Time Warping Distance

Time-Weighted Dynamic Time Warping for Satellite Image Time Series Analysis

Dual KS Discriminant Analysis and Classification

Dual Scaling Analysis of Multiple Choice Data

Unpacking Assignment for Lists via Pattern Matching

Simple Client for the DuckDuckGo Instant Answer API

Create dummy/indicator variables flexibly and efficiently

Automatic Creation of Dummies with Support for Predictive Modeling

Dunn's Test of Multiple Comparisons Using Rank Sums

Software implementation of step-down and step-up Dunnett test procedures

a package for checking high-throughput genomic data redundancy in meta-analysis

Bayesian inference from count data using discrete uniform priors

Assessment of duplication rates in RNA-Seq datasets

Discrete variations of a fractional Brownian motion

Analyze Dose-Volume Histograms and Check Constraints

Faster Computation of Common Statistics and Miscellaneous Functions

Access to Dataverse 3 APIs

A Client for 'data.world' REST API

DWD implementation based on A IPM SOCP solver

Fast Algorithms for Large Scale Generalized Distance Weighted Discrimination

Degree Weighted Lasso

Parametric Regression for Discrete Response

Dyadic Network Analysis

The GASSCO method for correcting for slide-dependent gene-specific dye bias

Example data for the dyebias package, which implements the GASSCO method.

Interface to 'Dygraphs' Interactive Time Series Charting Library

Quadratic Programming using Cyclic Projections

Did You Mean?

Time Series Regression

Dynamically visualized probability distributions and their moments

dynamicGraph

Dynamic Hazard Models using State Space Models

Methods for Detection of Clusters in Hierarchical Clustering Dendrograms

Fit a Stochastic Dynamical Array Model to Array Data

Implementation of the Dynamic TOPMODEL Hydrological Model

Dynamic Trees for Learning and Design

Full Interactive GUI for Dynamic Biplot in R

Denoising and clustering for dynamical image sequence (2D or 3D)+T

Complexity of Short and Coarse-Grained Time Series

Dynamic Correlation Package

Dynamic document tools

Resisting Neighbor Label Attack in a Dynamic Network

Fitting Dynamic Frailty Models with the EM Algorithm

Interactive visualization of dataframes and factorial planes

Fit Dynamic Intervention Model

Dynamic Linear Regression

Dynamic Nomograms for Linear, Generalized Linear and Proportional Hazard Models

Fast Fourier Transform to Identify Associations Between Time Course Omics Data

Dynamic Panel Data Models

Companion Package to "Dynamic Prediction in Clinical Survival Analysis"

Dynamic Modeling in R

Dynamic Range Boxes

Dynamic Stochastic Block Models

Dynamic Simulations of Autoregressive Relationships

Dynamic Models for Survival Data

Methods for Estimating Optimal Dynamic Treatment Regimes

Functions for Dyadic Sequence Analyses

Estimation and Prediction of Skewed Spatial Processes