Packages

A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

D2C

Predicting Causal Direction from Dependency Features

D3GB

Interactive Genome Browser with R

d3heatmap

Interactive Heat Maps Using 'htmlwidgets' and 'D3.js'

D3M

Two Sample Test with Wasserstein Metric

d3Network

Tools for creating D3 JavaScript network, tree, dendrogram, and Sankey graphs from R

D3partitionR

Interactive Charts of Nested and Hierarchical Data with 'D3.js'

d3plus

Seamless 'D3Plus' Integration

d3r

'd3.js' Utilities for R

d3Tree

Create Interactive Collapsible Trees with the JavaScript 'D3' Library

DA.MRFA

Dimensionality Assessment using Minimum Rank Factor Analysis

DAAG

Data Analysis and Graphics Data and Functions

DAAGbio

Data Sets and Functions, for Demonstrations with Expression Arrays and Gene Sequences

DAAGxtras

Data Sets and Functions, supplementary to DAAG

daarem

Damped Anderson Acceleration with Epsilon Monotonicity for Accelerating EM-Like Monotone Algorithms

dabestr

Data Analysis using Bootstrap-Coupled Estimation

DAC

Calculating Data Agreement Criterion Scores to Rank Experts Based on Their Beliefs

DACF

Data Analysis with Ceiling and/or Floor Data

dad

Three-Way / Multigroup Data Analysis Through Densities

dada2

Accurate, high-resolution sample inference from amplicon sequencing data

dae

Functions Useful in the Design and ANOVA of Experiments

daewr

Design and Analysis of Experiments with R

daff

Diff, Patch and Merge for Data.frames

dafs

Data analysis for forensic scientists

dagbag

Learning directed acyclic graphs (DAGs) through bootstrap aggregating

DAGGER

Consensus genetic maps

dagitty

Graphical Analysis of Structural Causal Models

dagLogo

dagLogo

dagR

R functions for directed acyclic graphs

Daim

Diagnostic accuracy of classification models.

DAIME

Effects of Changing Deposition Rates

DAISIE

Dynamical Assembly of Islands by Speciation, Immigration and Extinction

DAKS

Data Analysis and Knowledge Spaces

DALEX

Descriptive mAchine Learning EXplanations

DALEX2

Descriptive mAchine Learning EXplanations

dalmatian

Automating the Fitting of Double Linear Mixed Models in 'JAGS'

DALY

The DALY Calculator - Graphical User Interface for Probabilistic DALY Calculation in R

dam

Data Analysis Metabolomics

daMA

Efficient design and analysis of factorial two-colour microarray data

DamiaNN

Neural Network Numerai

DaMiRseq

Data Mining for RNA-seq data: normalization, feature selection and classification

DAMisc

Dave Armstrong's Miscellaneous Functions

DAMOCLES

Dynamic Assembly Model of Colonization, Local Extinction and Speciation

damr

Interface to Drosophila Activity Monitor System Result Files

dams

Dams in the United States from the National Inventory of Dams (NID)

DandEFA

Dandelion Plot for R-Mode Exploratory Factor Analysis

dang

'Dang' Associated New Goodies

dani

Design and Analysis of Non-Inferiority Trials

DAP

Discriminant Analysis via Projections

DAPAR

Tools for the Differential Analysis of Proteins Abundance with R

DAPARdata

Data accompanying the DAPAR and Prostar packages

dapr

'purrr'-Like Apply Functions Over Input Elements

darch

Package for Deep Architectures and Restricted Boltzmann Machines

Dark

The Analysis of Dark Adaptation Data

DarkDiv

Estimating Probabilistic Dark Diversity

darksky

Tools to Work with the 'Dark Sky' 'API'

DART

Denoising Algorithm based on Relevance network Topology

dartR

Importing and Analysing SNP and Silicodart Data Generated by Genome-Wide Restriction Fragment Analysis

darts

Statistical Tools to Analyze Your Darts Game

DASiR

Distributed Annotation System in R

Dasst

Tools for Reading, Processing and Writing 'DSSAT' Files

dat

Tools for Data Manipulation

data.table

Extension of `data.frame`

data.tree

General Purpose Hierarchical Data Structure

data.world

Functions and Add-Ins for Working with 'data.world' Data Sets and Projects

Data2LD

Functional Data Analysis with Linear Differential Equations

data360r

Wrapper for TC/Govdata360 API

DatabaseConnector

Connecting to Various Database Platforms

DatabaseConnectorJars

JAR Dependencies for the 'DatabaseConnector' Package

DatABEL

File-Based Access to Large Matrices Stored on HDD in Binary Format

DatabionicSwarm

Swarm Intelligence for Self-Organized Clustering

datacheck

Tools for Checking Data Consistency

datacheckr

Data Checking

DataClean

Data Cleaning

DataCombine

Tools for Easily Combining and Cleaning Data Sets

dataCompareR

Compare Two Data Frames and Summarise the Difference

datadogr

R Client for 'Datadog' API

datadr

Divide and Recombine for Large, Complex Data

DataEntry

Make it Easier to Enter Questionnaire Data

dataesgobr

Access and Use Spain Government's API

DataExplorer

Automate Data Exploration and Treatment

dataframe

Fast data frames

DataFrameConstr

Constrained data frames and homogenous list classes

dataframes2xls

Write Data Frames to Xls Files

datafsm

Estimating Finite State Machine Models from Data

DataGraph

Export Data from R so DataGraph can Read it

datalist

An R package to convert data sets for import into JAGS, WinBUGS and OpenBUGS and to generate data.frames for predicting the effects of particular variables.

DataLoader

Import Multiple File Types

dataMaid

A Suite of Checks for Identification of Potential Errors in a Data Frame as Part of the Data Screening Process

datamap

A system for mapping foreign objects to R variables and environments

datamaps

Create Interactive Web Maps with the 'JavaScript Datamaps' Library

datamart

Unified access to your data sources

datamerge

Merging of Overlapping and Inconsistent Data

dataMeta

Create and Append a Data Dictionary for an R Dataset

dataonderivatives

Easily Source Publicly Available Data on Derivatives

dataone

R Interface to the DataONE REST API

dataonelibs

DataONE R Client Libraries

datapack

A Flexible Container to Transport and Manipulate Data and Associated Resources

datapackage.r

Data Package 'Frictionless Data'

DataPackageR

Construct Reproducible Analytic Data Sets as R Packages

datapasta

R Tools for Data Copy-Pasta

dataPreparation

Automated Data Preparation

dataQualityR

Performs variable level data quality checks and generates summary statistics

dataRetrieval

Retrieval Functions for USGS and EPA Hydrologic and Water Quality Data

datarium

Data Bank for Statistical Analysis and Visualization

datarobot

'DataRobot' Predictive Modeling API

datasauRus

Datasets from the Datasaurus Dozen

dataseries

Switzerland's Data Series in One Place

datasets.load

Interface for Loading Datasets

Datasmith

Tools to Complete Euclidean Distance Matrices

DataSpaceR

Interface to 'the CAVD DataSpace'

DatAssim

Data Assimilation

datastepr

An Implementation of a SAS-Style Data Step

datastructures

Implementation of Core Data Structures

datasus

An Interface to DATASUS System

datautils

Timestamps and Advanced Plotting

dataverse

Client for Dataverse 4 Repositories

dataview

Human readable data presentation

DataVisualizations

Visualizations of High-Dimensional Data

DataViz

Data Visualisation Using an HTML Page and 'D3.js'

date

Functions for Handling Dates

datetime

Nominal Dates, Times, and Durations

datetimeutils

Utilities for Dates and Times

DATforDCEMRI

Deconvolution Analysis Tool for Dynamic Contrast Enhanced MRI

datoramar

Interface to the 'Datorama' API

datos

Traduce al Español Varios Conjuntos de Datos de Práctica

datr

'Dat' Protocol Interface

dave

Functions for "Data Analysis in Vegetation Ecology"

DAVIDQuery

Retrieval from the DAVID bioinformatics data resource into R

davidTiling

Data and analysis scripts for David, Huber et al. yeast tiling array paper

Davies

The Davies Quantile Function

dawai

Discriminant Analysis with Additional Information

daymetr

Interface to the 'Daymet' Web Services

db.r

A Database Exploration Tool with Assisted Querying and Schema Exploration

dbarts

Discrete Bayesian Additive Regression Trees Sampler

DBChIP

Differential Binding of Transcription Factor with ChIP-seq

dbConnect

Provides a graphical user interface to connect with databases that use MySQL.

dbEmpLikeGOF

Goodness-of-fit and two sample comparison tests using sample entropy

dbEmpLikeNorm

Test for joint assessment of normality

DBEST

Detecting Breakpoints and Estimating Segments in Trend

dbfaker

A Tool to Ensure the Validity of Database Writes

DBfit

A Double Bootstrap Method for Analyzing Linear Models with Autoregressive Errors

DBFTest

DBF test of no difference between groups

DBGSA

methods of distance-based gene set functional enrichment analysis.

DBHC

Sequence Clustering with Discrete-Output HMMs

dbhydroR

'DBHYDRO' Hydrologic and Water Quality Data

DBI

R Database Interface

DBItest

Testing 'DBI' Back Ends

DBKGrad

Discrete Beta Kernel Graduation of Mortality Data

dblcens

Compute the NPMLE of distribution from doubly censored data

dblr

Discrete Boosting Logistic Regression

dbmss

Distance-Based Measures of Spatial Structures

dbparser

'DrugBank' Database XML Parser

dbplot

Simplifies Plotting Data Inside Databases

dbplyr

A 'dplyr' Back End for Databases

dbscan

Density Based Clustering of Applications with Noise (DBSCAN) and Related Algorithms

dbstats

Distance-Based Statistics

dbx

A Fast, Easy-to-Use Database Interface

dc3net

Inferring Condition-Specific Networks via Differential Network Inference

DCA

Dynamic Correlation Analysis for High Dimensional Data

DCchoice

Analyzing Dichotomous Choice Contingent Valuation Data

DCD

Differential Community Detection in Paired Biological Networks

DCEM

Clustering for Multivariate and Univariate Data Using Expectation Maximization Algorithm

dcemriS4

A Package for Image Analysis of DCE-MRI (S4 Implementation)

DCG

Data Cloud Geometry (DCG): Using Random Walks to Find Community Structure in Social Network Analysis

DCGL

Differential Co-expression Analysis and Differential Regulation Analysis of Gene Expression Microarray Data

dcGOR

Analysis of Ontologies and Protein Domain Annotations

dcGSA

Distance-correlation based Gene Set Analysis for longitudinal gene expression profiles

DChaos

Chaotic Time Series Analysis

dChipIO

Methods for Reading dChip Files

DChIPRep

DChIPRep - Analysis of chromatin modification ChIP-Seq data with replication

DCL

Claims Reserving under the Double Chain Ladder Model

dclone

Data Cloning and MCMC Tools for Maximum Likelihood Methods

dclong.spt

Sequential Permutation Test

DCluster

Functions for the Detection of Spatial Clusters of Diseases

DClusterm

Model-Based Detection of Disease Clusters

DCM

Data Converter Module

dcminfo

Information Matrix for Diagnostic Classification Models

dcmle

Hierarchical Models Made Easy with Data Cloning

dcmodify

Modify Data Using Externally Defined Modification Rules

dcmr

Attribute profile estimation using Diagnostic Classification Models and MCMC

DCODE

List Linear n-Peptide Constraints for Overlapping Protein Regions

dCovTS

Distance Covariance and Correlation for Time Series Analysis

dcurver

Utility Functions for Davidian Curves

dcv

Conventional Cross-validation statistics for climate-growth model

ddalpha

Depth-Based Classification and Calculation of Data Depth

ddCt

The ddCt Algorithm for the Analysis of Quantitative Real-Time PCR (qRT-PCR)

DDD

Diversity-Dependent Diversification

dde

Solve Delay Differential Equations

ddeploy

Wrapper for the Duke Deploy REST API

ddepn

Dynamic Deterministic Effects Propagation Networks: Infer signalling networks for timecourse RPPA data.

ddgraph

Distinguish direct and indirect interactions with Graphical Modelling

DDHFm

Variance Stabilization by Data-Driven Haar-Fisz (for Microarrays)

ddiv

Data Driven I-v Feature Extraction

DDIwR

DDI with R

DDM

Death Registration Coverage Estimation

DDoutlier

Distance & Density-Based Outlier Detection

ddpcr

Analysis and Visualization of Droplet Digital PCR in R and on the Web

ddPCRclust

Clustering algorithm for ddPCR data

DDPGPSurv

DDP-GP Survival Analysis

DDPNA

Disease-Related Differential Proteins and Co-Expression Network Analysis

ddR

Distributed Data Structures in R

DDRTree

Learning Principal Graphs with DDRTree

ddsPLS

Data-Driven Sparse PLS Robust to Missing Samples for Mono and Multi-Block Data Sets

ddst

Data Driven Smooth Tests

deadband

Statistical Deadband Algorithms Comparison

deal

Learning Bayesian Networks with Mixed Variables

deamer

Deconvolution density estimation with adaptive methods for a variable prone to measurement error

deaR

Conventional and Fuzzy Data Envelopment Analysis

deBInfer

Bayesian Inference for Differential Equations

debrowser

Interactive Differential Expresion Analysis Browser

debug

MVB's debugger for R

debugme

Debug R Packages

debugr

Debug Tool to Watch Objects/Expressions While Running an R Script

decctools

Get Energy Data from the UK Dept of Energy and Climate Change

DECIDE

DEComposition of Indirect and Direct Effects

decido

Bindings for 'Mapbox' Ear Cutting Triangulation Library

DECIPHER

Tools for curating, analyzing, and manipulating biological sequences

decision

Statistical Decision Analysis

DecisionAnalysis

Implementation of Multi Objective Decision Analysis

DecisionCurve

Calculate and Plot Decision Curves

decisionSupport

Quantitative Support of Decision Making under Uncertainty

deckgl

An R Interface to 'deck.gl'

DeclareDesign

Declare and Diagnose Research Designs

decode

Differential Co-Expression and Differential Expression Analysis

decoder

Decode Coded Variables to Plain Text and the Other Way Around

DEComplexDisease

A tool for differential expression analysis and DEGs based investigation to complex diseases by bi-clustering analysis

decomposedPSF

Time Series Prediction with PSF and Decomposition Methods (EMD and EEMD)

decompr

Global-Value-Chain Decomposition

decon

Deconvolution Estimation in Measurement Error Models

DeconRNASeq

Deconvolution of Heterogeneous Tissue Samples for mRNA-Seq data

deconstructSigs

Identifies Signatures Present in a Tumor Sample

decontam

Identify Contaminants in Marker-gene and Metagenomics Sequencing Data

deconvolveR

Empirical Bayes Estimation Strategies

DecorateR

Fit and Deploy DECORATE Trees

DEDS

Differential Expression via Distance Summary for Microarray Data

Deducer

A Data Analysis GUI for R

DeducerExtras

Additional dialogs and functions for Deducer

DeducerPlugInExample

Deducer Plug-in Example

DeducerPlugInScaling

Reliability and factor analysis plugin

DeducerSpatial

Deducer for spatial data analysis

DeducerSurvival

Add Survival Dialogue to Deducer

DeducerText

Deducer GUI for Text Data

deducorrect

Deductive Correction, Deductive Imputation, and Deterministic Correction

deductive

Data Correction and Imputation Using Deductive Methods

DeepBlueR

DeepBlueR

deepboost

Deep Boosting Ensemble Modeling

deepgmm

Deep Gaussian Mixture Models

deeplearning

An Implementation of Deep Neural Network for Regression and Classification

deeplr

Interface to the 'DeepL' Translation API

deepnet

deep learning toolkit in R

deepNN

Deep Learning

deepSNV

Detection of subclonal SNVs in deep sequencing data.

default

Change the Default Arguments in R Functions

Defaults

Create Global Function Defaults

define

Create FDA-Style Data and Program Definitions

deflateBR

Deflate Nominal Brazilian Reais

DEFormats

Differential gene expression data formats converter

deformula

Integration of One-Dimensional Functions with Double Exponential Formulas

defrostR

An Amphibian Systematics Tool

degenes

Detection of differentially expressed genes.

deGradInfer

Parameter Inference for Systems of Differential Equation

DEGraph

Two-sample tests on a graph

degreenet

Models for Skewed Count Distributions Relevant to Networks

DEGreport

Report of DEG analysis

DEGseq

Identify Differentially Expressed Genes from RNA-seq data

deisotoper

Detection of Isotope Pattern of a Mass Spectrometric Measurement

dejaVu

Multiple Imputation for Recurrent Events

Delaporte

Statistical Functions for the Delaporte Distribution

DelayedArray

Delayed operations on array-like objects

DelayedEffect.Design

Sample Size and Power Calculations using the APPLE and SEPPLE Methods

DelayedMatrixStats

Functions that Apply to Rows and Columns of 'DelayedMatrix' Objects

deldir

Delaunay Triangulation and Dirichlet (Voronoi) Tessellation

DeLorean

Estimates Pseudotimes for Single Cell Expression Data

delt

Estimation of Multivariate Densities Using Adaptive Partitions

Delta

Measure of Agreement Between Two Raters

deltaGseg

deltaGseg

deltaPlotR

Identification of Dichotomous Differential Item Functioning (DIF) using Angoff's Delta Plot Method

deltar

Calculation of Delta R Values

DeMAND

DeMAND

Demerelate

Functions to Calculate Relatedness on Diploid Genetic Data

DEMEtics

Calculation of Gst and D values characterizing the genetic differentiation between populations.

demi

Differential Expression from Multiple Indicators

deming

Deming, Theil-Sen, Passing-Bablock and Total Least Squares Regression

DemoDecomp

Decompose Demographic Functions

demogR

Analysis of Age-Structured Demographic Models

demoGraphic

Providing Demographic Table with the P-Value, Standardized Mean Difference Value

demography

Forecasting Mortality, Fertility, Migration and Population Data

demoKde

Kernel Density Estimation for Demonstration Purposes

DEMOVA

DEvelopment (of Multi-Linear QSPR/QSAR) MOdels VAlidated using Test Set

demu

Optimal Design Emulators via Point Processes

dendextend

Extending 'dendrogram' Functionality in R

dendextendRcpp

Faster dendrogram manipulation using Rcpp

dendroExtra

Nonlinear Methods for Analyzing Dendroclimatological Data

dendroextras

Extra Functions to Cut, Label and Colour Dendrogram Clusters

dendrometeR

Analyzing Dendrometer Data

DendroSync

A Set of Tools for Calculating Spatial Synchrony Between Tree-Ring Chronologies

dendroTools

Linear and Nonlinear Methods for Analyzing Daily and Monthly Dendroclimatological Data

DendSer

Dendrogram seriation: ordering for visualisation

dendsort

Modular Leaf Ordering Methods for Dendrogram Nodes

DengueRT

Parameter Estimates and Real-Time Prediction of a Single Dengue Outbreak

denoiSeq

Differential Expression Analysis Using a Bottom-Up Model

denoiseR

Regularized Low Rank Matrix Estimation

denovolyzeR

Statistical Analyses of De Novo Genetic Variants

denpro

Visualization of multivariate, functions, sets, and data

denseFLMM

Functional Linear Mixed Models for Densely Sampled Data

Density.T.HoldOut

Density.T.HoldOut: Non-combinatorial T-estimation Hold-Out for density estimation

densityClust

Clustering by Fast Search and Find of Density Peaks

DensParcorr

Dens-Based Method for Partial Correlation Estimation in Large Scale Brain Networks

densratio

Density Ratio Estimation

denstrip

Density Strips and Other Methods for Compactly Illustrating Distributions

DEoptim

Global Optimization by Differential Evolution

DEoptimR

Differential Evolution Optimization in Pure R

DEP

Differential Enrichment analysis of Proteomics data

depend.truncation

Statistical Methods for the Analysis of Dependently Truncated Data

DepLogo

Dependency Logo

DEploid

Deconvolute Mixed Genomes with Unknown Proportions

depmix

Dependent Mixture Models

depmixS4

Dependent Mixture Models - Hidden Markov Models of GLMs and Other Distributions in S4

depth

Nonparametric Depth Functions for Multivariate Analysis

depth.plot

Multivariate Analogy of Quantiles

DepthProc

Statistical Depth Functions for Multivariate Analysis

depthTools

Depth Tools Package

dequer

Stacks, Queues, and 'Deques' for R

DeRezende.Ferreira

Zero Coupon Yield Curve Modelling

derfinder

Annotation-agnostic differential expression analysis of RNA-seq data at base-pair resolution via the DER Finder approach

derfinderData

Processed BigWigs from BrainSpan for examples

derfinderHelper

derfinder helper package

derfinderPlot

Plotting functions for derfinder

Deriv

Symbolic Differentiation

derivmkts

Functions and R Code to Accompany Derivatives Markets

DES

Discrete Event Simulation

desc

Manipulate DESCRIPTION Files

DEScan2

Differential Enrichment Scan 2

descomponer

Seasonal Adjustment by Frequency Analysis

descr

Descriptive Statistics

DescribeDisplay

An Interface to the 'DescribeDisplay' 'GGobi' Plugin

describer

Describe Data in R Using Common Descriptive Statistics

DescriptiveStats.OBeu

Descriptive Statistics 'OpenBudgets.eu'

descriptr

Generate Descriptive Statistics

descstatsr

Descriptive Univariate Statistics

desctable

Produce Descriptive and Comparative Tables Easily

DescTools

Tools for Descriptive Statistics

DescToolsAddIns

Some Functions to be Used as Shortcuts in 'RStudio'

deseasonalize

Optimal deseasonalization for geophysical time series using AR fitting

DESeq

Differential gene expression analysis based on the negative binomial distribution

DESeq2

Differential gene expression analysis based on the negative binomial distribution

designGG

Computational tool for designing genetical genomics experiments.

designGLMM

Finding Optimal Block Designs for a Generalised Linear Mixed Model

DesignLibrary

Library of Research Designs

designmatch

Matched Samples that are Balanced and Representative by Design

DesignPatterns

Design Patterns in R to build reusable object-oriented software

DEsingle

DEsingle for detecting three types of differential expression in single-cell RNA-seq data

desiR

Desirability Functions for Ranking, Selecting, and Integrating Data

desirability

Function Optimization and Ranking via Desirability Functions

desire

Desirability functions in R

DESnowball

Bagging with Distance-based Regression for Differential Gene Expression Analyses

deSolve

Solvers for Initial Value Problems of Differential Equations ('ODE', 'DAE', 'DDE')

DeSousa2013

Poor prognosis colon cancer is defined by a molecularly distinct subtype and precursor lesion

DESP

Estimation of Diagonal Elements of Sparse Precision-Matrices

desplot

Plotting Field Plans for Agricultural Experiments

destiny

Creates diffusion maps

DEsubs

DEsubs: an R package for flexible identification of differentially expressed subpathways using RNA-seq expression experiments

DET

Representation of DET Curve with Confidence Intervals

detect

Analyzing Wildlife Data with Detection Error

detector

Detect Data Containing Personally Identifiable Information

detectRUNS

Detect Runs of Homozygosity and Runs of Heterozygosity in Diploid Genomes

deTestSet

Test Set for Differential Equations

DetMCD

Implementation of the DetMCD Algorithm (Robust and Deterministic Estimation of Location and Scatter)

detpack

Density Estimation and Random Number Generation with Distribution Element Trees

DetR

Suite of Deterministic and Robust Algorithms for Linear Regression

detrendeR

Start the detrendeR Graphical User Interface (GUI)

detrendr

Detrend Images

deTS

Tissue-Specific Enrichment Analysis

DetSel

A Computer Program to Detect Markers Responding to Selection

detzrcr

Compare Detrital Zircon Suites

devEMF

EMF Graphics Output Device

devFunc

Clear and Condense Argument Check for User-Defined Functions

DEVis

A Differential Expression Analysis Toolkit for Visual Analytics and Data Aggregation

devoid

A Graphic Device that Does Nothing

Devore6

Data sets from Devore's "Prob and Stat for Eng (6th ed)"

Devore7

Data sets from Devore's "Prob and Stat for Eng (7th ed)"

devRate

Quantify the Relationship Between Development Rate and Temperature in Ectotherms

devtools

Tools to Make Developing R Packages Easier

DevTreatRules

Develop Treatment Rules with Observational Data

DEXSeq

Inference of differential exon usage in RNA-Seq

dexter

Data Management and Analysis of Tests

dextergui

A Graphical User Interface for Dexter

dexterMST

CML Calibration of Multi Stage Tests

dexus

DEXUS - Identifying Differential Expression in RNA-Seq Studies with Unknown Conditions or without Replicates

df2json

Convert a dataframe to JSON

dfcomb

Phase I/II Adaptive Dose-Finding Design for Combination Studies

dfCompare

Compare Two Dataframes and Return Adds, Changes, and Deletes

dfConn

Dynamic Functional Connectivity Analysis

dfcrm

Dose-Finding by the Continual Reassessment Method

dfexplore

Explore data.frames by plotting NA and classes of each variable

DFIT

Differential Functioning of Items and Tests

dfmeta

Meta-Analysis of Phase I Dose-Finding Early Clinical Trials

dfmta

Phase I/II Adaptive Dose-Finding Design for MTA

dfoptim

Derivative-Free Optimization

Dforest

Decision Forest

DFP

Gene Selection

dfped

Extrapolation and Bridging of Adult Information in Early Phase Dose-Finding Paediatrics Studies

dfphase1

Phase I Control Charts (with Emphasis on Distribution-Free Methods)

dfpk

Bayesian Dose-Finding Designs using Pharmacokinetics (PK) for Phase I Clinical Trials

dga

Capture-Recapture Estimation using Bayesian Model Averaging

dGAselID

Genetic Algorithm with Incomplete Dominance for Feature Selection

DGCA

Differential Gene Correlation Analysis

dggridR

Discrete Global Grids

dglars

Differential Geometric Least Angle Regression

dglm

Double Generalized Linear Models

DGM

Dynamic Graphical Models

dgmb

Simulating Data for PLS Mode B Structural Models

dgo

Dynamic Estimation of Group-Level Opinion

dgodata

Data for the 'dgo' Package

dgof

Discrete Goodness-of-Fit Tests

DGVM3D

3D Forest Simulation Visualization Tool

DHARMa

Residual Diagnostics for Hierarchical (Multi-Level / Mixed) Regression Models

dhga

Differential Hub Gene Analysis

dhglm

Double Hierarchical Generalized Linear Models

dhh

A Heavy-Headed Distribution

DHS.rates

Calculates Demographic Indicators

dHSIC

Independence Testing via Hilbert Schmidt Independence Criterion

di

Deficit Index (DI)

diagis

Diagnostic Plot and Multivariate Summary Statistics of Weighted Samples from Importance Sampling

diagmeta

Meta-Analysis of Diagnostic Accuracy Studies with Several Cutpoints

diagonals

Block Diagonal Extraction or Replacement

diagram

Functions for Visualising Simple Graphs (Networks), Plotting Flow Diagrams

DiagrammeR

Graph/Network Visualization

DiagrammeRsvg

Export DiagrammeR Graphviz Graphs as SVG

DiagTest3Grp

Diagnostic test summary measures for three ordinal groups

DiallelAnalysisR

Diallel Analysis with R

dialr

Parse, Format, and Validate International Phone Numbers

dialrjars

Required 'libphonenumber' jars for the 'dialr' Package

dials

Tools for Creating Tuning Parameter Values

diaplt

Beads Summary Plot of Ranges

dice

Calculate probabilities of various dice-rolling events

dicecrawler

Downloads Job Descriptions from Dice.com

DiceDesign

Designs of Computer Experiments

DiceEval

Construction and Evaluation of Metamodels

DiceKriging

Kriging Methods for Computer Experiments

DiceOptim

Kriging-Based Optimization for Computer Experiments

diceR

Diverse Cluster Ensemble in R

DiceView

Plot Methods for Computer Experiments Design and Surrogate

dichromat

Color Schemes for Dichromats

dicionariosIBGE

Dictionaries for reading microdata surveys from IBGE

DIconvex

Finding Patterns of Monotonicity and Convexity in Data

did

Treatment Effects with Multiple Periods and Groups

DidacticBoost

A Simple Implementation and Demonstration of Gradient Boosting

Diderot

Bibliographic Network Analysis

didrooRFM

Compute Recency Frequency Monetary Scores for your Customer Data

dief

Metrics for Continuous Efficiency

dielectric

Defines some physical constants and dielectric functions commonly used in optics, plasmonics.

DierckxSpline

R companion to "Curve and Surface Fitting with Splines"

diezeit

R Interface to the ZEIT ONLINE Content API

DIFboost

Detection of Differential Item Functioning (DIF) in Rasch Models by Boosting Techniques

difconet

Differential Coexpressed Networks

Difdtl

Difference of Two Precision Matrices Estimation

diff

Statistics: What's the Difference?

DiffBind

Differential Binding Analysis of ChIP-Seq Peak Data

diffcoexp

Differential Co-expression Analysis

DiffCorr

Analyzing and Visualizing Differential Correlation Networks in Biological Data

diffcyt

Differential discovery in high-dimensional cytometry via high-resolution clustering

diffdepprop

Calculates Confidence Intervals for two Dependent Proportions

diffdf

Dataframe Difference Tool

diffee

Fast and Scalable Learning of Sparse Changes in High-Dimensional Gaussian Graphical Model Structure

diffEq

Functions from the book Solving Differential Equations in R

diffeqr

Solving Differential Equations (ODEs, SDEs, DDEs, DAEs)

diffeR

Metrics of Difference for Comparing Pairs of Maps or Pairs of Variables

diffGeneAnalysis

Performs differential gene expression Analysis

diffHic

Differential Analyis of Hi-C Data

diffIRT

Diffusion IRT Models for Response and Response Time Data

DiffLogo

DiffLogo: A comparative visualisation of biooligomer motifs

diffloop

Identifying differential DNA loops from chromatin topology data

diffloopdata

Example ChIA-PET Datasets for the diffloop Package

diffMeanVar

Detecting Gene Probes with Different Means or Variances Between Two Groups

diffMeshGP

Multi-Fidelity Computer Experiments Using the Tuo-Wu-Yu Model

DiffNet

Detection of Statistically Significant Changes in Complex Biological Networks

diffobj

Diffs for R Objects

diffpriv

Easy Differential Privacy

diffr

Display Differences Between Two Files using Codediff Library

diffractometry

Baseline Identification and Peak Decomposition for x-Ray Diffractograms

diffrprojects

Projects for Text Version Comparison and Analytics in R

diffrprojectswidget

Visualization for 'diffrprojects'

diffusion

Forecast the Diffusion of New Products

diffusionMap

Diffusion Map

DiffusionRgqd

Inference and Analysis for Generalized Quadratic Diffusions

DiffusionRimp

Inference and Analysis for Diffusion Processes via Data Imputation and Method of Lines

DiffusionRjgqd

Inference and Analysis for Jump Generalized Quadratic Diffusions

diffusr

Network Diffusion Algorithms

diffuStats

Diffusion scores on biological networks

DIFlasso

A Penalty Approach to Differential Item Functioning in Rasch Models

difNLR

DIF and DDF Detection by Non-Linear Regression Models

difR

Collection of Methods to Detect Dichotomous Differential Item Functioning (DIF)

DIFtree

Item Focussed Trees for the Identification of Items in Differential Item Functioning

digeR

GUI tool for analyzing 2D DIGE data

digest

Create Compact Hash Digests of R Objects

diggit

Inference of Genetic Variants Driving Cellular Phenotypes

diggitdata

Example data for the diggit package

Digiroo2

An application programming interface for generating null models of social contacts based on individuals' space use

digitalPCR

Estimate Copy Number for Digital PCR

digitize

Use Data from Published Plots in R

dils

Data-Informed Link Strength. Combine multiple-relationship networks into a single weighted network. Impute (fill-in) missing network links.

DIME

DIME (Differential Identification using Mixture Ensemble)

DIMORA

Diffusion Models R Analysis

dimRed

A Framework for Dimensionality Reduction

dina

Bayesian Estimation of DINA Model

dinamic

DiNAMIC A Method To Analyze Recurrent DNA Copy Number Aberrations in Tumors

dineq

Decomposition of (Income) Inequality

dint

A Toolkit for Year-Quarter, Year-Month and Year-Isoweek Dates

DiPhiSeq

Robust Tests for Differential Dispersion and Differential Expression in RNA-Sequencing Data

DiPs

Directional Penalties for Optimal Matching in Observational Studies

diptest

Hartigan's Dip Test Statistic for Unimodality - Corrected

DIRECT

Bayesian Clustering of Multivariate Data Under the Dirichlet-Process Prior

DirectedClustering

Directed Weighted Clustering Coefficient

DirectEffects

Estimating Controlled Direct Effects for Explaining Causal Findings

Directional

Directional Statistics

directlabels

Direct Labels for Multicolor Plots

Director

A dynamic visualization tool of multi-level data

directotree

Creates an Interactive Tree Structure of a Directory

directPA

Direction Analysis for Pathways and Kinases

DirectStandardisation

Adjusted Means and Proportions by Direct Standardisation

DirichletMultinomial

Dirichlet-Multinomial Mixture Model Machine Learning for Microbiome Data

dirichletprocess

Build Dirichlet Process Objects for Bayesian Modelling

DirichletReg

Dirichlet Regression in R

dirmcmc

Directional Metropolis Hastings Algorithm

dirmult

Estimation in Dirichlet-Multinomial distribution.

Disake

Discrete associated kernel estimators

discfrail

Cox Models for Time-to-Event Data with Nonparametric Discrete Group-Specific Frailties

discgolf

Discourse API Client

discharge

Fourier Analysis of Discharge Data

disclap

Discrete Laplace Exponential Family

disclapmix

Discrete Laplace Mixture Inference using the EM Algorithm

DiscML

DiscML: An R package for estimating evolutionary rates of discrete characters using maximum likelihood

disco

Discordance and Concordance of Transcriptomic Responses

discord

Functions for Discordant Kinship Modeling

discordant

The Discordant Method: A Novel Approach for Differential Correlation

discoveR

Exploratory Data Analysis System

discretecdAlgorithm

Coordinate-Descent Algorithm for Learning Sparse Discrete Bayesian Networks

DiscreteFDR

Multiple Testing Procedures with Adaptation for Discrete Tests

DiscreteInverseWeibull

Discrete Inverse Weibull Distribution

DiscreteLaplace

Discrete Laplace Distributions

discreteMTP

Multiple testing procedures for discrete test statistics

discreteRV

Create and Manipulate Discrete Random Variables

DiscreteWeibull

Discrete Weibull Distributions (Type 1 and 3)

discretization

Data preprocessing, discretization for classification.

discrimARTs

Discrimination of Alternative Reproductive Tactics (ARTs).

DiscriMiner

Tools of the Trade for Discriminant Analysis

discSurv

Discrete Time Survival Analysis

diseasemapping

Modelling Spatial Variation in Disease Risk for Areal Data

DisHet

Estimate the Gene Expression Levels and Component Proportions of the Normal, Stroma (Immune) and Tumor Components of Bulk Tumor Samples

DisimForMixed

Calculate Dissimilarity Matrix for Dataset with Mixed Attributes

DisImpact

Calculates Disproportionate Impact When Binary Success Data are Disaggregated by Subgroups

diskImageR

A Pipeline to Analyze Resistance and Tolerance from Drug Disk Diffusion Assays

diskmemoiser

Disk Memoisation For R

dismo

Species Distribution Modeling

disp2D

2D Hausdorff and Simplex Dispersion Orderings

disparityfilter

Disparity Filter Algorithm for Weighted Networks

displayHTS

displayHTS

dispmod

Modelling Dispersion in GLM

disposables

Create Disposable R Packages for Testing

dispRity

Measuring Disparity

dissever

Spatial Downscaling using the Dissever Algorithm

DiSSMod

Fitting Sample Selection Models for Discrete Response Variables

dissUtils

Utilities for making pairwise comparisons of multivariate data

Distance

Distance Sampling Detection Function and Abundance Estimation

distance.sample.size

Calculates Study Size Required for Distance Sampling

distances

Tools for Distance Metrics

DistatisR

DiSTATIS Three Way Metric Multidimensional Scaling

distcomp

Computations over Distributed Data without Aggregation

distcrete

Discrete Distribution Approximations

distdichoR

Distributional Method for the Dichotomisation of Continuous Outcomes

distdrawr

Download Occurrence Data of Vascular Plants in Germany from the FLORKART Database

distfree.cr

Distribution-Free Confidence Region

distill

'R Markdown' Format for Scientific and Technical Writing

distillery

Method Functions for Confidence Intervals and to Distill Information from an Object

disto

Unified Interface to Distance, Dissimilarity, Similarity Matrices

distory

Distance Between Phylogenetic Histories

distr

Object Oriented Implementation of Distributions

distrDoc

Documentation for 'distr' Family of R Packages

distreg.vis

Framework for the Visualization of Distributional Regression Models

distrEllipse

S4 Classes for Elliptically Contoured Distributions

distrEx

Extensions of Package 'distr'

DISTRIB

Four Essential Functions for Statistical Distributions Analysis: A New Functional Approach

DistributionOptimization

Distribution Optimization

DistributionUtils

Distribution Utilities

distrMod

Object Oriented Implementation of Probability Models

distrom

Distributed Multinomial Regression

distrr

Estimate and Manage Empirical Distributions

distrRmetrics

Distribution Classes for Distributions from Rmetrics

distrSim

Simulation Classes Based on Package 'distr'

distrTeach

Extensions of Package 'distr' for Teaching Stochastics/Statistics in Secondary School

distrTEst

Estimation and Testing Classes Based on Package 'distr'

disttools

Distance Object Manipulation Tools

divagis

Provides tools for quality checks of georeferenced plant species accessions.

divDyn

Diversity Dynamics using Fossil Sampling Data

DivE

Diversity Estimator

diveMove

Dive Analysis and Calibration

diverse

Diversity Measures for Complex Systems

diversitree

Comparative 'Phylogenetic' Analyses of Diversification

diveRsity

A Comprehensive, General Purpose Population Genetics Analysis Package

DiversityOccupancy

Building Diversity Models from Multiple Species Occupancy Models

DiversitySampler

Functions for re-sampling a community matrix to compute diversity indices at different sampling levels.

divest

Get Images Out of DICOM Format Quickly

DivMelt

HRM Diversity Assay Analysis Tool

divo

Tools for Analysis of Diversity and Similarity in Biological Systems

dixon

Nearest Neighbour Contingency Table Analysis

dixonTest

Dixon's Ratio Test for Outlier Detection

DJL

Distance Measure Based Judgment and Learning

dkanr

Client for the 'DKAN' API

dkDNA

Diffusion Kernels on a Set of Genotypes

dks

The double Kolmogorov-Smirnov package for evaluating multiple testing procedures.

dLagM

Time Series Regression Models with Distributed Lag Models

DLASSO

Implementation of Adaptive or Non-Adaptive Differentiable Lasso and SCAD Penalties in Linear Models

dlbayes

Use Dirichlet Laplace Prior to Solve Linear Regression Problem and Do Variable Selection

DLBCL

Diffuse large B-cell lymphoma expression data

dlib

Allow Access to the 'Dlib' C++ Library

dlm

Bayesian and Likelihood Analysis of Dynamic Linear Models

dlmap

Detection Localization Mapping for QTL

dlmodeler

Generalized Dynamic Linear Modeler

DLMtool

Data-Limited Methods Toolkit

dlnm

Distributed Lag Non-Linear Models

dlookr

Tools for Data Diagnosis, Exploration, Transformation

dlsem

Distributed-Lag Linear Structural Equation Models

dlstats

Download Stats of R Packages

dma

Dynamic Model Averaging

dmai

Divisia Monetary Aggregates Index

DMCHMM

Differentially Methylated CpG using Hidden Markov Model

DmelSGI

Experimental data and documented source code for the paper "A Map of Directional Genetic Interactions in a Metazoan Cell"

dml

Distance Metric Learning in R

dmm

Dyadic Mixed Model for Pedigree Data

DMMF

Daily Based Morgan-Morgan-Finney (DMMF) Soil Erosion Model

dMod

Dynamic Modeling and Parameter Estimation in ODE Models

DMR

Delete or Merge Regressors for linear model selection.

DMRcaller

Differentially Methylated Regions caller

DMRcate

Methylation array and sequencing spatial analysis methods

DMRcatedata

Data Package for DMRcate package

DMRforPairs

DMRforPairs: identifying Differentially Methylated Regions between unique samples using array based methylation profiles

DMRMark

DMR Detection by Non-Homogeneous Hidden Markov Model from Methylation Array Data

DMRnet

Delete or Merge Regressors Algorithms for Linear and Logistic Model Selection and High-Dimensional Data

DMRScan

Detection of Differentially Methylated Regions

dmrseq

Detection and inference of differentially methylated regions from Whole Genome Bisulfite Sequencing

dmt

Dependency Modeling Toolkit

dmutate

Mutate Data Frames with Random Variates

DMwR

Functions and data for "Data Mining with R"

DMwR2

Functions and Data for the Second Edition of "Data Mining with R"

dna

Differential Network Analysis

DNABarcodes

A tool for creating and analysing DNA barcodes used in Next Generation Sequencing multiplexing experiments

DNAcopy

DNA copy number data analysis

DNAprofiles

DNA Profiling Evidence Analysis

DNAseqtest

Generating and Testing DNA Sequences

DNAshapeR

High-throughput prediction of DNA shape features

DNAtools

Tools for Analysing Forensic Genetic DNA Data

dnc

Dynamic Network Clustering

DnE

Distribution and Equation

dnet

Integrative Analysis of Omics Data in Terms of Network, Evolution and Ontology

DNetFinder

Estimating Differential Networks under Semiparametric Gaussian Graphical Models

dng

Distributions and Gradients

DNLC

Differential Network Local Consistency Analysis

DNMF

Discriminant Non-Negative Matrix Factorization

dnr

Simulate Dynamic Networks using Exponential Random Graph Models (ERGM) Family

DO.db

A set of annotation maps describing the entire Disease Ontology

DOBAD

Analysis of Discretely Observed Linear Birth-and-Death(-and-Immigration) Markov Chains

dobson

Data from the GLM Book by Dobson and Barnett

doBy

Groupwise Statistics, LSmeans, Linear Contrasts, Utilities

docker

Wraps Docker Python SDK

dockerfiler

Easy Dockerfile Creation from R

docopt

Command-Line Interface Specification Language

docopulae

Optimal Designs for Copula Models

docstring

Provides Docstring Capabilities to R Functions

doctr

Easily Check Data Consistency and Quality

documair

Automatic Documentation for R packages

document

Run 'roxygen2' on (Chunks of) Single Code Files

documenter

Documents Files

docuSignr

Connect to 'DocuSign' API

docxtools

Tools for R Markdown to Docx Documents

docxtractr

Extract Data Tables and Comments from 'Microsoft' 'Word' Documents

Dodge

Acceptance Sampling Ideas Originated by H.F. Dodge

dodgr

Distances on Directed Graphs

DODR

Detection of Differential Rhythmicity

DoE.base

Full Factorials, Orthogonal Arrays and Base Utilities for DoE Packages

DoE.MIParray

Creation of Arrays by Mixed Integer Programming

DoE.wrapper

Wrapper Package for Design of Experiments Functionality

DoEstRare

Rare Variant Association Test Based on Position Density Estimation

doex

The One-Way Heteroscedastic ANOVA Tests

doFuture

A Universal Foreach Parallel Adapter using the Future API of the 'future' Package

domainsignatures

Geneset enrichment based on InterPro domain signatures

doMC

Foreach Parallel Adaptor for 'parallel'

Dominance

A Package to Calculate and Visualize Dominance Hierarchies

dominanceanalysis

Dominance Analysis

domino

R Console Bindings for the 'Domino Command-Line Client'

DominoEffect

Identification and Annotation of Protein Hotspot Residues

doMPI

Foreach Parallel Adaptor for the Rmpi Package

DonaPLLP2013

Supplementary data package for Dona et al. (2013) containing example images and tables

doParallel

Foreach Parallel Adaptor for the 'parallel' Package

doppelgangR

Identify likely duplicate samples from genomic or meta-data

DOQTL

Genotyping and QTL Mapping in DO Mice

doRedis

Foreach parallel adapter for the rredis package

doremi

Dynamics of Return to Equilibrium During Multiple Inputs

doRNG

Generic Reproducible Parallel Backend for 'foreach' Loops

Doscheda

A DownStream Chemo-Proteomics Analysis Pipeline

DOSE

Disease Ontology Semantic and Enrichment analysis

dosearch

Causal Effect Identification from Multiple Incomplete Data Sources

DoseFinding

Planning and Analyzing Dose Finding Experiments

doSNOW

Foreach Parallel Adaptor for the 'snow' Package

dosresmeta

Multivariate Dose-Response Meta-Analysis

dostats

Compute Statistics Helper Functions

DOT

Render and Export DOT Graphs in R

DoTC

Distribution of Typicality Coefficients

dotCall64

Enhanced Foreign Function Interface Supporting Long Vectors

dotdot

Enhanced Assignment Operator to Overwrite or Grow Objects

dotenv

Load Environment Variables from '.env'

dotwhisker

Dot-and-Whisker Plots of Regression Results

doubcens

Survivor Function Estimation for Doubly Interval-Censored Failure Time Data

double.truncation

Analysis of Doubly-Truncated Data

DoubleCone

Test Against Parametric Regression Function

DoubleExpSeq

Differential Exon Usage Test for RNA-Seq Data via Empirical Bayes Shrinkage of the Dispersion Parameter

DOvalidation

Kernel Hazard Estimation with Best One-Sided and Double One-Sided Cross-Validation

Dowd

Functions Ported from 'MMR2' Toolbox Offered in Kevin Dowd's Book Measuring Market Risk

downloader

Download Files over HTTP and HTTPS

downscale

Downscaling Species Occupancy

downsize

A Tool to Downsize Large Workflows for Testing

dpa

Dynamic Path Approach

dparser

Port of 'Dparser' Package

DPBBM

Dirichlet Process Beta-Binomial Mixture

dpcid

Differential Partial Correlation IDentification

dpcR

Digital PCR Analysis

dpglasso

Primal Graphical Lasso

Dpit

Distribution Pitting

dplR

Dendrochronology Program Library in R

dplyr

A Grammar of Data Manipulation

dplyr.teradata

A 'Teradata' Backend for 'dplyr'

dplyrAssist

RStudio Addin for Teaching and Learning Data Manipulation Using 'dplyr'

DPM.GGM

Dirichlet Process Mixtures (DPM) and related models using Gaussian Graphical Models (GGM) for Sparse covariance estimation in heterogeneous samples

dpmixsim

Dirichlet Process Mixture Model Simulation for Clustering and Image Segmentation

dpmr

Data Package Manager for R

DPP

Inference of Parameters of Normal Distributions from a Mixture of Normals

DPpackage

Bayesian Nonparametric Modeling in R

dprep

Data Pre-Processing and Visualization Functions for Classification

dprint

Print Tabular Data to Graphics Device

DPtree

Dirichlet-Based Polya Tree

DPw

Semi- and nonparametric Bayesian Subset Selection Procedures

DPWeibull

Dirichlet Process Weibull Mixture Model for Survival Data

dqrng

Fast Pseudo Random Number Generators

dqshiny

Enhance Shiny Apps with Customizable Modules

dr

Methods for Dimension Reduction for Regression

dr4pl

Dose Response Data Analysis using the 4 Parameter Logistic (4pl) Model

dragon

Deep Time Redox Analysis of the Geobiology Ontology Network

dragonking

Statistical Tools to Identify Dragon Kings

dragulaR

Drag and Drop Elements in 'Shiny' using 'Dragula Javascript Library'

drake

A Pipeline Toolkit for Reproducible Computation at Scale

drat

'Drat' R Archive Template

draw

Wrapper Functions for Producing Graphics

drawExpression

Visualising R syntax through graphics

drawProteins

Package to Draw Protein Schematics from Uniprot API output

DRaWR

Discriminative Random Walk with Restart

DrBats

Data Representation: Bayesian Approach That's Sparse

drc

Analysis of Dose-Response Curves

DREAM4

Synthetic Expression Data for Gene Regulatory Network Inference from the 2009 DREAM4 challenge

DREGAR

Regularized Estimation of Dynamic Linear Regression in the Presence of Autocorrelated Residuals (DREGAR)

dressCheck

data and software for checking Dressman JCO 25(5) 2007

drfit

Dose-Response Data Evaluation

drgee

Doubly Robust Generalized Estimating Equations

DRHotNet

Differential Risk Hotspots in a Linear Network

DRI

DR-Integrator

DriftBurstHypothesis

Calculates the Test-Statistic for the Drift Burst Hypothesis

drifter

Concept Drift and Concept Shift Detection for Predictive Models

driftR

Drift Correcting Water Quality Data

driftsel

Distinguishing drift and natural selection as causes of phenotypic differentiation

DrillR

R Driver for Apache Drill

DrImpute

Imputing Dropout Events in Single-Cell RNA-Sequencing Data

DRIMSeq

Differential transcript usage and tuQTL analyses with Dirichlet-multinomial model in RNA-seq

DrInsight

Drug Repurposing: Integration and Systematic Investigation of Genomic High Throughput Data

DRIP

Discontinuous Regression and Image Processing

DriverNet

Drivernet: uncovering somatic driver mutations modulating transcriptional networks in cancer

drLumi

Multiplex Immunoassays Data Analysis

drm

Regression and association models for repeated categorical data

drmdel

Dual Empirical Likelihood Inference under Density Ratio Models in the Presence of Multiple Samples

DRomics

Dose Response for Omics

DropletUtils

Utilities for Handling Single-Cell Droplet Data

droptest

Simulates LOX Drop Testing

drosgenome1.db

Affymetrix Drosophila Genome Array annotation data (chip drosgenome1)

drosgenome1cdf

drosgenome1cdf

drosgenome1probe

Probe sequence data for microarrays of type drosgenome1

drosophila2.db

Affymetrix Drosophila Genome 2.0 Array annotation data (chip drosophila2)

drosophila2cdf

drosophila2cdf

drosophila2probe

Probe sequence data for microarrays of type drosophila2

DRR

Dimensionality Reduction via Regression

drsmooth

Dose-Response Modeling with Smoothing Splines

drtmle

Doubly-Robust Nonparametric Estimation and Inference

DrugClust

Implementation of a Machine Learning Framework for Predicting Drugs Side Effects

drugCombo

Drug Interaction Modeling Based on Loewe Additivity Following Harbron's Approach

DrugVsDisease

Comparison of disease and drug profiles using Gene set Enrichment Analysis

DrugVsDiseasedata

Drug versus Disease Data

ds

Descriptive Statistics

dsa

Seasonal Adjustment of Daily Time Series

DSAIDE

Dynamical Systems Approach to Infectious Disease Epidemiology

DSAIRM

Dynamical Systems Approach to Immune Response Modeling

dsample

Discretization-Based Direct Random Sample Generation

DSBayes

Bayesian subgroup analysis in clinical trials

dse

Dynamic Systems Estimation (Time Series Package)

dse1

DSE (unbundled transition package).

dse2

DSE (unbundled transition package).

dSimer

Integration of Disease Similarity Methods

DSL

Distributed Storage and List

dslabs

Data Science Labs

dslice

Dynamic Slicing

dsm

Density Surface Modelling of Distance Sampling Data

dsmodels

A Language to Facilitate Simulation and Visualization of Two-Dimensional Dynamical Systems

DSpat

Spatial Modelling for Distance Sampling Data

dsQTL

dsQTL, data excerpt from Degner et al. 2012 Nature letter

dsr

Compute Directly Standardized Rates, Ratios and Differences

dsrTest

Tests and Confidence Intervals on Directly Standardized Rates for Several Methods

DSS

Dispersion shrinkage for sequencing data

DSsim

Distance Sampling Simulations

dst

Using the Theory of Belief Functions

DstarM

Analyze Two Choice Reaction Time Data with the D*M Method

dstat

Conditional Sensitivity Analysis for Matched Observational Studies

DStree

Recursive Partitioning for Discrete-Time Survival Trees

dSVA

Direct Surrogate Variable Analysis

DT

A Wrapper of the JavaScript Library 'DataTables'

DTA

Dynamic Transcriptome Analysis

dtables

Simplifying Descriptive Frequencies and Statistics

dtangle

Cell Type Deconvolution from Gene Expressions

DTAT

Dose Titration Algorithm Tuning

DTAXG

Diagnostic Test Assessment in the Absence of Gold Standard

DTComPair

Comparison of Binary Diagnostic Tests in a Paired Study Design

DtD

Distance to Default

DTDA

Doubly truncated data analysis

DTDA.ni

Doubly Truncated Data Analysis, Non Iterative

dti

Analysis of Diffusion Weighted Imaging (DWI) Data

DTK

Dunnett-Tukey-Kramer Pairwise Multiple Comparison Test Adjusted for Unequal Variances and Unequal Sample Sizes

DTMCPack

Suite of functions related to discrete-time discrete-state Markov Chains

dtp

Dynamic Panel Threshold Model

dtpcrm

Dose Transition Pathways for Continual Reassessment Method

dtplyr

Data Table Back-End for 'dplyr'

DTR

Estimation and Comparison of Dynamic Treatment Regimes

dtree

Decision Trees

DTRlearn

Learning Algorithms for Dynamic Treatment Regimes

DTRlearn2

Statistical Learning Methods for Optimizing Dynamic Treatment Regimes

DTRreg

DTR Estimation and Inference via G-Estimation, Dynamic WOLS, and Q-Learning

DTSg

A Class for Working with Time Series Based on 'data.table' and 'R6' with Largely Optional Reference Semantics

dtt

Discrete Trigonometric Transforms

dttr2

Manipulate Dates, DateTimes and Times

dtw

Dynamic Time Warping Algorithms

DTWBI

Imputation of Time Series Based on Dynamic Time Warping

dtwclust

Time Series Clustering Along with Optimizations for the Dynamic Time Warping Distance

dtwSat

Time-Weighted Dynamic Time Warping for Satellite Image Time Series Analysis

DTWUMI

Imputation of Multivariate Time Series Based on Dynamic Time Warping

dualKS

Dual KS Discriminant Analysis and Classification

dualScale

Dual Scaling Analysis of Multiple Choice Data

dub

Unpacking Assignment for Lists via Pattern Matching

duckduckr

Simple Client for the DuckDuckGo Instant Answer API

dummies

Create dummy/indicator variables flexibly and efficiently

dummy

Automatic Creation of Dummies with Support for Predictive Modeling

dunn.test

Dunn's Test of Multiple Comparisons Using Rank Sums

DunnettTests

Software implementation of step-down and step-up Dunnett test procedures

DupChecker

a package for checking high-throughput genomic data redundancy in meta-analysis

dupiR

Bayesian inference from count data using discrete uniform priors

dupRadar

Assessment of duplication rates in RNA-Seq datasets

durmod

Mixed Proportional Hazard Competing Risk Model

DvDdata

Drug versus Disease Data

dvfBm

Discrete variations of a fractional Brownian motion

DVHmetrics

Analyze Dose-Volume Histograms and Check Constraints

dvmisc

Convenience Functions, Moving Window Statistics, and Graphics

dvn

Access to Dataverse 3 APIs

dwapi

A Client for 'data.world' REST API

DWD

DWD implementation based on A IPM SOCP solver

DWDLargeR

Fast Algorithms for Large Scale Generalized Distance Weighted Discrimination

DWLasso

Degree Weighted Lasso

DWreg

Parametric Regression for Discrete Response

dyads

Dyadic Network Analysis

dydea

Detection of Chaotic and Regular Intervals in the Data

dyebias

The GASSCO method for correcting for slide-dependent gene-specific dye bias

dyebiasexamples

Example data for the dyebias package, which implements the GASSCO method.

dygraphs

Interface to 'Dygraphs' Interactive Time Series Charting Library

Dykstra

Quadratic Programming using Cyclic Projections

DYM

Did You Mean?

dyn

Time Series Regression

dynamac

Dynamic Simulation and Testing for Single-Equation ARDL Models

DynamicDistribution

Dynamically visualized probability distributions and their moments

DynamicGP

Modelling and Analysis of Dynamic Computer Experiments

dynamicGraph

dynamicGraph

dynamichazard

Dynamic Hazard Models using State Space Models

dynamicTreeCut

Methods for Detection of Clusters in Hierarchical Clustering Dendrograms

dynamo

Fit a Stochastic Dynamical Array Model to Array Data

DynaRankR

Inferring Longitudinal Dominance Hierarchies

dynatopmodel

Implementation of the Dynamic TOPMODEL Hydrological Model

dynaTree

Dynamic Trees for Learning and Design

dynBiplotGUI

Full Interactive GUI for Dynamic Biplot in R

DynClust

Denoising and clustering for dynamical image sequence (2D or 3D)+T

dyncomp

Complexity of Short and Coarse-Grained Time Series

dynCorr

Dynamic Correlation Package

dyndimred

Dimensionality Reduction Methods in a Common Format

DynDoc

Dynamic document tools

dynetNLAResistance

Resisting Neighbor Label Attack in a Dynamic Network

dynfrail

Fitting Dynamic Frailty Models with the EM Algorithm

dynGraph

Interactive visualization of dataframes and factorial planes

dynia

Fit Dynamic Intervention Model

dynlm

Dynamic Linear Regression

DynNom

Visualising Statistical Models using Dynamic Nomograms

dynOmics

Fast Fourier Transform to Identify Associations Between Time Course Omics Data

dynpanel

Dynamic Panel Data Models

dynparam

Creating Meta-Information for Parameters

dynpred

Companion Package to "Dynamic Prediction in Clinical Survival Analysis"

dynprog

Dynamic Programming Domain-Specific Language

dynr

Dynamic Modeling in R

dynRB

Dynamic Range Boxes

dynsbm

Dynamic Stochastic Block Models

dynsim

Dynamic Simulations of Autoregressive Relationships

dynsurv

Dynamic Models for Survival Data

DynTxRegime

Methods for Estimating Optimal Dynamic Treatment Regimes

dynutils

Common Functionality for the 'dynverse' Packages

DySeq

Functions for Dyadic Sequence Analyses

DZEXPM

Estimation and Prediction of Skewed Spatial Processes